RNA–Protein interactions for RNA: ENST00000397396.5

TSPAN4-202, Transcript of tetraspanin 4, humanhuman

TSL 5 BASIC

Gene TSPAN4, Length 1,332 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-202ENST00000397396 TCOF1Q13428 1488 aaKnown RBP35.9■■■■□ 3.34
TSPAN4-202ENST00000397396 ARHGAP5Q13017 1502 aa35.87■■■■□ 3.33
TSPAN4-202ENST00000397396 CDC42BPBQ9Y5S2 1711 aa35.85■■■■□ 3.33
TSPAN4-202ENST00000397396 CD109Q6YHK3 1445 aa35.83■■■■□ 3.33
TSPAN4-202ENST00000397396 MAP3K4Q9Y6R4 1608 aa35.81■■■■□ 3.32
TSPAN4-202ENST00000397396 FAM50AQ14320 339 aaKnown RBP35.81■■■■□ 3.32
TSPAN4-202ENST00000397396 EFCAB2Q5VUJ9 269 aa35.8■■■■□ 3.32
TSPAN4-202ENST00000397396 CAMSAP2Q08AD1 1489 aa35.79■■■■□ 3.32
TSPAN4-202ENST00000397396 FAM69CQ0P6D2 419 aa35.79■■■■□ 3.32
TSPAN4-202ENST00000397396 PLEKHH2Q8IVE3 1493 aa35.78■■■■□ 3.32
TSPAN4-202ENST00000397396 CFAP74Q9C0B2 1584 aa35.78■■■■□ 3.32
TSPAN4-202ENST00000397396 FANCAO15360 1455 aa35.73■■■■□ 3.31
TSPAN4-202ENST00000397396 ZNF777Q9ULD5 760 aaPredicted RBP35.73■■■■□ 3.31
TSPAN4-202ENST00000397396 SAMD9LQ8IVG5 1584 aa35.71■■■■□ 3.31
TSPAN4-202ENST00000397396 KIF13AQ9H1H9 1805 aa35.7■■■■□ 3.31
TSPAN4-202ENST00000397396 KIAA1107Q9UPP5 1409 aa35.68■■■■□ 3.3
TSPAN4-202ENST00000397396 PCGF6Q9BYE7 350 aa35.67■■■■□ 3.3
TSPAN4-202ENST00000397396 NEO1Q92859 1461 aa35.66■■■■□ 3.3
TSPAN4-202ENST00000397396 TEX14Q8IWB6 1497 aa35.65■■■■□ 3.3
TSPAN4-202ENST00000397396 ZNF644Q9H582 1327 aaPredicted RBP35.65■■■■□ 3.3
TSPAN4-202ENST00000397396 DNMT1P26358 1616 aaKnown RBP35.64■■■■□ 3.3
TSPAN4-202ENST00000397396 RSPH4AQ5TD94 716 aa35.63■■■■□ 3.29
TSPAN4-202ENST00000397396 ABCC1P33527 1531 aa35.63■■■■□ 3.29
TSPAN4-202ENST00000397396 ARHGEF5Q12774 1597 aa35.63■■■■□ 3.29
TSPAN4-202ENST00000397396 SYCP2Q9BX26 1530 aa35.59■■■■□ 3.29
TSPAN4-202ENST00000397396 DAPK1P53355 1430 aa35.58■■■■□ 3.29
TSPAN4-202ENST00000397396 AKNAQ7Z591 1439 aa35.58■■■■□ 3.29
TSPAN4-202ENST00000397396 ADGRL1O94910 1474 aa35.58■■■■□ 3.29
TSPAN4-202ENST00000397396 CCDC141Q6ZP82 1450 aa35.56■■■■□ 3.28
TSPAN4-202ENST00000397396 MBD5Q9P267 1494 aa35.56■■■■□ 3.28
TSPAN4-202ENST00000397396 SHANK2Q9UPX8 1470 aa35.53■■■■□ 3.28
TSPAN4-202ENST00000397396 ABCC5O15440 1437 aa35.53■■■■□ 3.28
TSPAN4-202ENST00000397396 ITGAEP38570 1179 aa35.53■■■■□ 3.28
TSPAN4-202ENST00000397396 CROCC2H7BZ55 1655 aa35.52■■■■□ 3.28
TSPAN4-202ENST00000397396 PPRC1Q5VV67 1664 aaKnown RBP35.52■■■■□ 3.28
TSPAN4-202ENST00000397396 HNRNPMP52272 730 aaKnown RBP eCLIP35.49■■■■□ 3.27
TSPAN4-202ENST00000397396 TSPOAP1O95153 1857 aa35.48■■■■□ 3.27
TSPAN4-202ENST00000397396 SCAPERQ9BY12 1400 aa35.48■■■■□ 3.27
TSPAN4-202ENST00000397396 TRHP20396 242 aaPredicted RBP35.47■■■■□ 3.27
TSPAN4-202ENST00000397396 ARHGEF12Q9NZN5 1544 aa35.46■■■■□ 3.27
TSPAN4-202ENST00000397396 TSPY4P0CV99 314 aa35.46■■■■□ 3.27
TSPAN4-202ENST00000397396 TSPY10P0CW01 314 aa35.46■■■■□ 3.27
TSPAN4-202ENST00000397396 PTPRKQ15262 1439 aa35.43■■■■□ 3.26
TSPAN4-202ENST00000397396 ROCK1Q13464 1354 aa35.42■■■■□ 3.26
TSPAN4-202ENST00000397396 MAST1Q9Y2H9 1570 aa35.42■■■■□ 3.26
TSPAN4-202ENST00000397396 ZNF518AQ6AHZ1 1483 aa35.42■■■■□ 3.26
TSPAN4-202ENST00000397396 C9orf84Q5VXU9 1444 aa35.4■■■■□ 3.26
TSPAN4-202ENST00000397396 DENND4BO75064 1496 aaPredicted RBP35.4■■■■□ 3.26
TSPAN4-202ENST00000397396 POGZQ7Z3K3 1410 aa35.39■■■■□ 3.26
TSPAN4-202ENST00000397396 TRAPPC8Q9Y2L5 1435 aa35.39■■■■□ 3.26
TSPAN4-202ENST00000397396 ADGBQ8N7X0 1667 aa35.39■■■■□ 3.26
TSPAN4-202ENST00000397396 ADGRL2O95490 1459 aa35.39■■■■□ 3.26
TSPAN4-202ENST00000397396 ANKRD30AQ9BXX3 1397 aa35.35■■■■□ 3.25
TSPAN4-202ENST00000397396 HFM1A2PYH4 1435 aa35.33■■■■□ 3.25
TSPAN4-202ENST00000397396 RTEL1-TNFRSF6BF6WH68 1400 aa35.33■■■■□ 3.25
TSPAN4-202ENST00000397396 KDM5CP41229 1560 aa35.32■■■■□ 3.24
TSPAN4-202ENST00000397396 CHIC2Q9UKJ5 165 aa35.31■■■■□ 3.24
TSPAN4-202ENST00000397396 SPAG9O60271 1321 aaKnown RBP35.3■■■■□ 3.24
TSPAN4-202ENST00000397396 NCOA1Q15788 1441 aa35.28■■■■□ 3.24
TSPAN4-202ENST00000397396 PLXNC1O60486 1568 aa35.28■■■■□ 3.24
TSPAN4-202ENST00000397396 GCC2Q8IWJ2 1684 aa35.27■■■■□ 3.24
TSPAN4-202ENST00000397396 AFAP1Q8N556 730 aa35.27■■■■□ 3.24
TSPAN4-202ENST00000397396 RICTORQ6R327 1708 aa35.26■■■■□ 3.24
TSPAN4-202ENST00000397396 INO80Q9ULG1 1556 aaPredicted RBP35.26■■■■□ 3.23
TSPAN4-202ENST00000397396 ZFYVE16Q7Z3T8 1539 aa35.25■■■■□ 3.23
TSPAN4-202ENST00000397396 SETD5Q9C0A6 1442 aa35.25■■■■□ 3.23
TSPAN4-202ENST00000397396 ATP7AQ04656 1500 aa35.24■■■■□ 3.23
TSPAN4-202ENST00000397396 NAIPQ13075 1403 aa35.23■■■■□ 3.23
TSPAN4-202ENST00000397396 MLH3Q9UHC1 1453 aa35.23■■■■□ 3.23
TSPAN4-202ENST00000397396 HECW2Q9P2P5 1572 aa35.22■■■■□ 3.23
TSPAN4-202ENST00000397396 ZMYM4Q5VZL5 1548 aa35.2■■■■□ 3.23
TSPAN4-202ENST00000397396 RRP7BPQ9NSQ0 103 aa35.19■■■■□ 3.22
TSPAN4-202ENST00000397396 FRMPD1Q5SYB0 1578 aa35.19■■■■□ 3.22
TSPAN4-202ENST00000397396 KIF15Q9NS87 1388 aa35.18■■■■□ 3.22
TSPAN4-202ENST00000397396 ACIN1Q9UKV3 1341 aaKnown RBP35.18■■■■□ 3.22
TSPAN4-202ENST00000397396 RAPGEF3O95398 923 aa35.16■■■■□ 3.22
TSPAN4-202ENST00000397396 MAGI2Q86UL8 1455 aa35.16■■■■□ 3.22
TSPAN4-202ENST00000397396 HRCP23327 699 aa35.15■■■■□ 3.22
TSPAN4-202ENST00000397396 MYT1LQ9UL68 1186 aa35.15■■■■□ 3.22
TSPAN4-202ENST00000397396 DUOX2Q9NRD8 1548 aa35.13■■■■□ 3.21
TSPAN4-202ENST00000397396 RAB3GAP2Q9H2M9 1393 aa35.12■■■■□ 3.21
TSPAN4-202ENST00000397396 KIDINS220Q9ULH0 1771 aa35.12■■■■□ 3.21
TSPAN4-202ENST00000397396 ANKRD50Q9ULJ7 1429 aa35.08■■■■□ 3.21
TSPAN4-202ENST00000397396 ERBINQ96RT1 1412 aa35.08■■■■□ 3.21
TSPAN4-202ENST00000397396 KDM6BO15054 1643 aa35.07■■■■□ 3.2
TSPAN4-202ENST00000397396 COL17A1Q9UMD9 1497 aaPredicted RBP35.06■■■■□ 3.2
TSPAN4-202ENST00000397396 ABCA6Q8N139 1617 aa35■■■■□ 3.19
TSPAN4-202ENST00000397396 DIP2CQ9Y2E4 1556 aa34.99■■■■□ 3.19
TSPAN4-202ENST00000397396 DHX29Q7Z478 1369 aaKnown RBP34.99■■■■□ 3.19
TSPAN4-202ENST00000397396 A2MP01023 1474 aa34.98■■■■□ 3.19
TSPAN4-202ENST00000397396 EIF2AK4Q9P2K8 1649 aaKnown RBP34.96■■■■□ 3.19
TSPAN4-202ENST00000397396 ARHGEF40Q8TER5 1519 aa34.95■■■■□ 3.19
TSPAN4-202ENST00000397396 YEATS2Q9ULM3 1422 aa34.92■■■■□ 3.18
TSPAN4-202ENST00000397396 REREQ9P2R6 1566 aa34.91■■■■□ 3.18
TSPAN4-202ENST00000397396 ATP10AO60312 1499 aa34.91■■■■□ 3.18
TSPAN4-202ENST00000397396 UNC13BO14795 1591 aa34.84■■■■□ 3.17
TSPAN4-202ENST00000397396 BCORL1Q5H9F3 1711 aa34.84■■■■□ 3.17
TSPAN4-202ENST00000397396 TRIM52Q96A61 297 aa34.81■■■■□ 3.16
TSPAN4-202ENST00000397396 KDM5DQ9BY66 1539 aa34.81■■■■□ 3.16
TSPAN4-202ENST00000397396 DEPDC5O75140 1603 aa34.78■■■■□ 3.16
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms