RNA–Protein interactions for RNA: ENST00000395802.7

VAPB-202, Transcript of VAMP associated protein B and C, humanhuman

TSL 1 (best) BASIC

Gene VAPB, Length 1,834 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-202ENST00000395802 ARAP3Q8WWN8 1544 aa20.62■□□□□ 0.89
VAPB-202ENST00000395802 EFCAB2Q5VUJ9 269 aa20.6■□□□□ 0.89
VAPB-202ENST00000395802 ZNF777Q9ULD5 760 aaPredicted RBP20.6■□□□□ 0.89
VAPB-202ENST00000395802 ARHGAP5Q13017 1502 aa20.6■□□□□ 0.89
VAPB-202ENST00000395802 CAMSAP2Q08AD1 1489 aa20.57■□□□□ 0.88
VAPB-202ENST00000395802 RSPH4AQ5TD94 716 aa20.57■□□□□ 0.88
VAPB-202ENST00000395802 PLEKHH2Q8IVE3 1493 aa20.57■□□□□ 0.88
VAPB-202ENST00000395802 CDC42BPBQ9Y5S2 1711 aa20.56■□□□□ 0.88
VAPB-202ENST00000395802 ITGAEP38570 1179 aa20.56■□□□□ 0.88
VAPB-202ENST00000395802 GLI2P10070 1586 aa20.54■□□□□ 0.88
VAPB-202ENST00000395802 CD109Q6YHK3 1445 aa20.54■□□□□ 0.88
VAPB-202ENST00000395802 ZNF644Q9H582 1327 aaPredicted RBP20.52■□□□□ 0.88
VAPB-202ENST00000395802 KIAA1107Q9UPP5 1409 aa20.52■□□□□ 0.88
VAPB-202ENST00000395802 FANCAO15360 1455 aa20.5■□□□□ 0.87
VAPB-202ENST00000395802 DNMT1P26358 1616 aaKnown RBP20.5■□□□□ 0.87
VAPB-202ENST00000395802 FAM69CQ0P6D2 419 aa20.49■□□□□ 0.87
VAPB-202ENST00000395802 DAPK1P53355 1430 aa20.49■□□□□ 0.87
VAPB-202ENST00000395802 SAMD9LQ8IVG5 1584 aa20.48■□□□□ 0.87
VAPB-202ENST00000395802 CFAP74Q9C0B2 1584 aa20.48■□□□□ 0.87
VAPB-202ENST00000395802 TSPY4P0CV99 314 aa20.48■□□□□ 0.87
VAPB-202ENST00000395802 TSPY10P0CW01 314 aa20.48■□□□□ 0.87
VAPB-202ENST00000395802 DIP2BQ9P265 1576 aa20.47■□□□□ 0.87
VAPB-202ENST00000395802 ARHGEF5Q12774 1597 aa20.47■□□□□ 0.87
VAPB-202ENST00000395802 ABCC5O15440 1437 aa20.46■□□□□ 0.87
VAPB-202ENST00000395802 MAP3K4Q9Y6R4 1608 aa20.45■□□□□ 0.86
VAPB-202ENST00000395802 CCDC141Q6ZP82 1450 aa20.44■□□□□ 0.86
VAPB-202ENST00000395802 MBD5Q9P267 1494 aa20.44■□□□□ 0.86
VAPB-202ENST00000395802 ROCK1Q13464 1354 aa20.43■□□□□ 0.86
VAPB-202ENST00000395802 SHANK2Q9UPX8 1470 aa20.43■□□□□ 0.86
VAPB-202ENST00000395802 AKNAQ7Z591 1439 aa20.43■□□□□ 0.86
VAPB-202ENST00000395802 HNRNPMP52272 730 aaKnown RBP eCLIP20.43■□□□□ 0.868e-7■■■■□ 23.4
VAPB-202ENST00000395802 NEO1Q92859 1461 aa20.42■□□□□ 0.86
VAPB-202ENST00000395802 ABCC1P33527 1531 aa20.42■□□□□ 0.86
VAPB-202ENST00000395802 SYCP2Q9BX26 1530 aa20.42■□□□□ 0.86
VAPB-202ENST00000395802 PTPRKQ15262 1439 aa20.42■□□□□ 0.86
VAPB-202ENST00000395802 ACIN1Q9UKV3 1341 aaKnown RBP20.41■□□□□ 0.86
VAPB-202ENST00000395802 HFM1A2PYH4 1435 aa20.4■□□□□ 0.86
VAPB-202ENST00000395802 ADGRL1O94910 1474 aa20.4■□□□□ 0.86
VAPB-202ENST00000395802 TEX14Q8IWB6 1497 aa20.4■□□□□ 0.86
VAPB-202ENST00000395802 SETD5Q9C0A6 1442 aa20.4■□□□□ 0.86
VAPB-202ENST00000395802 ANKRD30AQ9BXX3 1397 aa20.39■□□□□ 0.85
VAPB-202ENST00000395802 HRCP23327 699 aa20.39■□□□□ 0.85
VAPB-202ENST00000395802 CHIC2Q9UKJ5 165 aa20.39■□□□□ 0.85
VAPB-202ENST00000395802 CROCC2H7BZ55 1655 aa20.38■□□□□ 0.85
VAPB-202ENST00000395802 C9orf84Q5VXU9 1444 aa20.37■□□□□ 0.85
VAPB-202ENST00000395802 ADGRL2O95490 1459 aa20.36■□□□□ 0.85
VAPB-202ENST00000395802 SCAPERQ9BY12 1400 aa20.36■□□□□ 0.85
VAPB-202ENST00000395802 ADGBQ8N7X0 1667 aa20.34■□□□□ 0.85
VAPB-202ENST00000395802 ARHGEF12Q9NZN5 1544 aa20.34■□□□□ 0.85
VAPB-202ENST00000395802 NCOA1Q15788 1441 aa20.33■□□□□ 0.85
VAPB-202ENST00000395802 MAST1Q9Y2H9 1570 aa20.33■□□□□ 0.85
VAPB-202ENST00000395802 NAIPQ13075 1403 aa20.33■□□□□ 0.84
VAPB-202ENST00000395802 KIF13AQ9H1H9 1805 aa20.32■□□□□ 0.84
VAPB-202ENST00000395802 RRP7BPQ9NSQ0 103 aa20.32■□□□□ 0.84
VAPB-202ENST00000395802 RAB3GAP2Q9H2M9 1393 aa20.32■□□□□ 0.84
VAPB-202ENST00000395802 ZNF518AQ6AHZ1 1483 aa20.32■□□□□ 0.84
VAPB-202ENST00000395802 RTEL1-TNFRSF6BF6WH68 1400 aa20.31■□□□□ 0.84
VAPB-202ENST00000395802 TRAPPC8Q9Y2L5 1435 aa20.3■□□□□ 0.84
VAPB-202ENST00000395802 SPAG9O60271 1321 aaKnown RBP20.3■□□□□ 0.84
VAPB-202ENST00000395802 GCC2Q8IWJ2 1684 aa20.29■□□□□ 0.84
VAPB-202ENST00000395802 DENND4BO75064 1496 aaPredicted RBP20.29■□□□□ 0.84
VAPB-202ENST00000395802 AFAP1Q8N556 730 aa20.28■□□□□ 0.84
VAPB-202ENST00000395802 POGZQ7Z3K3 1410 aa20.27■□□□□ 0.84
VAPB-202ENST00000395802 TRHP20396 242 aaPredicted RBP20.26■□□□□ 0.83
VAPB-202ENST00000395802 KIF15Q9NS87 1388 aa20.26■□□□□ 0.83
VAPB-202ENST00000395802 TSPOAP1O95153 1857 aa20.26■□□□□ 0.83
VAPB-202ENST00000395802 PLXNC1O60486 1568 aa20.25■□□□□ 0.83
VAPB-202ENST00000395802 MYT1LQ9UL68 1186 aa20.25■□□□□ 0.83
VAPB-202ENST00000395802 CCER1Q8TC90 406 aaPredicted RBP20.24■□□□□ 0.83
VAPB-202ENST00000395802 PPRC1Q5VV67 1664 aaKnown RBP20.23■□□□□ 0.83
VAPB-202ENST00000395802 ANKRD50Q9ULJ7 1429 aa20.23■□□□□ 0.83
VAPB-202ENST00000395802 KDM5CP41229 1560 aa20.22■□□□□ 0.83
VAPB-202ENST00000395802 ATP7AQ04656 1500 aa20.21■□□□□ 0.83
VAPB-202ENST00000395802 ZFYVE16Q7Z3T8 1539 aa20.21■□□□□ 0.83
VAPB-202ENST00000395802 MLH3Q9UHC1 1453 aa20.21■□□□□ 0.83
VAPB-202ENST00000395802 DUOX2Q9NRD8 1548 aa20.2■□□□□ 0.82
VAPB-202ENST00000395802 INO80Q9ULG1 1556 aaPredicted RBP20.19■□□□□ 0.82
VAPB-202ENST00000395802 ERBINQ96RT1 1412 aa20.17■□□□□ 0.82
VAPB-202ENST00000395802 RAPGEF3O95398 923 aa20.17■□□□□ 0.82
VAPB-202ENST00000395802 HECW2Q9P2P5 1572 aa20.17■□□□□ 0.82
VAPB-202ENST00000395802 CLSPNQ9HAW4 1339 aa20.16■□□□□ 0.82
VAPB-202ENST00000395802 RICTORQ6R327 1708 aa20.15■□□□□ 0.82
VAPB-202ENST00000395802 TRIM52Q96A61 297 aa20.15■□□□□ 0.82
VAPB-202ENST00000395802 MAGI2Q86UL8 1455 aa20.15■□□□□ 0.82
VAPB-202ENST00000395802 DHX57Q6P158 1386 aaKnown RBP20.13■□□□□ 0.81
VAPB-202ENST00000395802 ZEB1P37275 1124 aaPredicted RBP20.13■□□□□ 0.81
VAPB-202ENST00000395802 KIDINS220Q9ULH0 1771 aa20.12■□□□□ 0.81
VAPB-202ENST00000395802 ZMYM4Q5VZL5 1548 aa20.12■□□□□ 0.81
VAPB-202ENST00000395802 DHX29Q7Z478 1369 aaKnown RBP20.11■□□□□ 0.81
VAPB-202ENST00000395802 KDM6BO15054 1643 aa20.09■□□□□ 0.81
VAPB-202ENST00000395802 FRMPD1Q5SYB0 1578 aa20.08■□□□□ 0.8
VAPB-202ENST00000395802 A2MP01023 1474 aa20.07■□□□□ 0.8
VAPB-202ENST00000395802 EIF2AK4Q9P2K8 1649 aaKnown RBP20.06■□□□□ 0.8
VAPB-202ENST00000395802 NUP155O75694 1391 aa20.05■□□□□ 0.8
VAPB-202ENST00000395802 MPHOSPH9Q99550 1183 aa20.04■□□□□ 0.8
VAPB-202ENST00000395802 SLC4A1APQ9BWU0 796 aaKnown RBP20.03■□□□□ 0.8
VAPB-202ENST00000395802 KDM5DQ9BY66 1539 aa20.02■□□□□ 0.8
VAPB-202ENST00000395802 COL17A1Q9UMD9 1497 aaPredicted RBP20.02■□□□□ 0.8
VAPB-202ENST00000395802 ABCA6Q8N139 1617 aa20.02■□□□□ 0.8
VAPB-202ENST00000395802 DIP2CQ9Y2E4 1556 aa20.02■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms