RNA–Protein interactions for RNA: ENST00000380833.8

CLCN4-202, Transcript of chloride voltage-gated channel 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLCN4, Length 6,750 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN4-202ENST00000380833 CFAP53Q96M91 514 aa13.71□□□□□ -0.21
CLCN4-202ENST00000380833 PDIA4P13667 645 aaKnown RBP13.71□□□□□ -0.22
CLCN4-202ENST00000380833 MAP7D2Q96T17 732 aa13.71□□□□□ -0.22
CLCN4-202ENST00000380833 STK26Q9P289 416 aa13.71□□□□□ -0.22
CLCN4-202ENST00000380833 HOMEZQ8IX15 550 aa13.7□□□□□ -0.22
CLCN4-202ENST00000380833 KNSTRNQ9Y448 316 aa13.7□□□□□ -0.22
CLCN4-202ENST00000380833 CSB-PGBD3P0DP91 1061 aa13.69□□□□□ -0.22
CLCN4-202ENST00000380833 NOM1Q5C9Z4 860 aaKnown RBP13.67□□□□□ -0.22
CLCN4-202ENST00000380833 MTERF4Q7Z6M4 381 aaKnown RBP13.67□□□□□ -0.22
CLCN4-202ENST00000380833 WWC1Q8IX03 1113 aa13.67□□□□□ -0.22
CLCN4-202ENST00000380833 CCDC180Q9P1Z9 1646 aa13.67□□□□□ -0.22
CLCN4-202ENST00000380833 IPO9Q96P70 1041 aaKnown RBP13.67□□□□□ -0.22
CLCN4-202ENST00000380833 GSE1Q14687 1217 aa13.66□□□□□ -0.22
CLCN4-202ENST00000380833 PLEKHD1A6NEE1 506 aa13.66□□□□□ -0.22
CLCN4-202ENST00000380833 KLHL34Q8N239 644 aa13.65□□□□□ -0.22
CLCN4-202ENST00000380833 CCDC66A2RUB6 948 aa13.64□□□□□ -0.23
CLCN4-202ENST00000380833 SRPK2P78362 688 aaKnown RBP13.64□□□□□ -0.23
CLCN4-202ENST00000380833 FAM13BQ9NYF5 915 aa13.63□□□□□ -0.23
CLCN4-202ENST00000380833 EIF4G2P78344 907 aaKnown RBP eCLIP13.63□□□□□ -0.23
CLCN4-202ENST00000380833 CARD11Q9BXL7 1154 aa13.63□□□□□ -0.23
CLCN4-202ENST00000380833 CHMP3Q9Y3E7 222 aa13.63□□□□□ -0.23
CLCN4-202ENST00000380833 HSP90AB1P08238 724 aaKnown RBP13.63□□□□□ -0.23
CLCN4-202ENST00000380833 TAF7LQ5H9L4 462 aa13.63□□□□□ -0.23
CLCN4-202ENST00000380833 DRC7Q8IY82 874 aa13.63□□□□□ -0.23
CLCN4-202ENST00000380833 G3V3G9 751 aa13.62□□□□□ -0.23
CLCN4-202ENST00000380833 MSH5O43196 834 aa13.62□□□□□ -0.23
CLCN4-202ENST00000380833 DCAF8Q5TAQ9 597 aa13.62□□□□□ -0.23
CLCN4-202ENST00000380833 GNL2Q13823 731 aaKnown RBP13.62□□□□□ -0.23
CLCN4-202ENST00000380833 RRP9O43818 475 aaKnown RBP13.61□□□□□ -0.23
CLCN4-202ENST00000380833 NUTM2FA1L443 756 aa13.61□□□□□ -0.23
CLCN4-202ENST00000380833 NUTM2DQ5VT03 806 aaPredicted RBP13.6□□□□□ -0.23
CLCN4-202ENST00000380833 TPM2P07951 284 aa13.6□□□□□ -0.23
CLCN4-202ENST00000380833 TAF3Q5VWG9 929 aa13.59□□□□□ -0.23
CLCN4-202ENST00000380833 TEX35Q5T0J7 233 aa13.59□□□□□ -0.23
CLCN4-202ENST00000380833 STK11IPQ8N1F8 1099 aa13.59□□□□□ -0.23
CLCN4-202ENST00000380833 PHF23Q9BUL5 403 aaPredicted RBP13.58□□□□□ -0.24
CLCN4-202ENST00000380833 CREBRFQ8IUR6 639 aa13.58□□□□□ -0.24
CLCN4-202ENST00000380833 HSCBQ8IWL3 235 aa13.58□□□□□ -0.24
CLCN4-202ENST00000380833 GZF1Q9H116 711 aaPredicted RBP13.58□□□□□ -0.24
CLCN4-202ENST00000380833 GGT6Q6P531 493 aa13.58□□□□□ -0.24
CLCN4-202ENST00000380833 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.57□□□□□ -0.24
CLCN4-202ENST00000380833 GBP4Q96PP9 640 aa13.57□□□□□ -0.24
CLCN4-202ENST00000380833 CFDP1Q9UEE9 299 aaPredicted RBP13.57□□□□□ -0.24
CLCN4-202ENST00000380833 VPS53Q5VIR6 699 aa13.57□□□□□ -0.24
CLCN4-202ENST00000380833 TMX4Q9H1E5 349 aaPredicted RBP13.57□□□□□ -0.24
CLCN4-202ENST00000380833 GOLGA6L4A6NEF3 574 aa13.56□□□□□ -0.24
CLCN4-202ENST00000380833 NOC3LQ8WTT2 800 aaKnown RBP13.56□□□□□ -0.24
CLCN4-202ENST00000380833 NUDCQ9Y266 331 aa13.56□□□□□ -0.24
CLCN4-202ENST00000380833 NACADO15069 1562 aa13.56□□□□□ -0.24
CLCN4-202ENST00000380833 B4GALNT3Q6L9W6 998 aa13.56□□□□□ -0.24
CLCN4-202ENST00000380833 FANCIQ9NVI1 1328 aa13.56□□□□□ -0.24
CLCN4-202ENST00000380833 KRI1Q8N9T8 703 aaKnown RBP13.55□□□□□ -0.24
CLCN4-202ENST00000380833 ZNF526Q8TF50 670 aaPredicted RBP13.54□□□□□ -0.24
CLCN4-202ENST00000380833 LTV1Q96GA3 475 aaPredicted RBP13.53□□□□□ -0.24
CLCN4-202ENST00000380833 HTATSF1O43719 755 aaKnown RBP13.53□□□□□ -0.24
CLCN4-202ENST00000380833 RAD21O60216 631 aa13.52□□□□□ -0.24
CLCN4-202ENST00000380833 CSPP1Q1MSJ5 1256 aa13.52□□□□□ -0.24
CLCN4-202ENST00000380833 RTF1Q92541 710 aaKnown RBP13.52□□□□□ -0.24
CLCN4-202ENST00000380833 ZMYND15Q9H091 742 aa13.52□□□□□ -0.25
CLCN4-202ENST00000380833 HMGB1P09429 215 aaKnown RBP13.52□□□□□ -0.25
CLCN4-202ENST00000380833 GPS2Q13227 327 aa13.52□□□□□ -0.25
CLCN4-202ENST00000380833 NEFHP12036 1026 aa13.51□□□□□ -0.25
CLCN4-202ENST00000380833 HSP90B1P14625 803 aaKnown RBP13.51□□□□□ -0.25
CLCN4-202ENST00000380833 CWC15Q9P013 229 aaKnown RBP13.51□□□□□ -0.25
CLCN4-202ENST00000380833 FAM43AQ8N2R8 423 aa13.5□□□□□ -0.25
CLCN4-202ENST00000380833 NOL8Q76FK4 1167 aaKnown RBP13.5□□□□□ -0.25
CLCN4-202ENST00000380833 GORABQ5T7V8 394 aa13.48□□□□□ -0.25
CLCN4-202ENST00000380833 FRAT2O75474 233 aaPredicted RBP13.47□□□□□ -0.25
CLCN4-202ENST00000380833 SIN3AQ96ST3 1273 aa13.47□□□□□ -0.25
CLCN4-202ENST00000380833 DCAF11Q8TEB1 546 aa13.47□□□□□ -0.25
CLCN4-202ENST00000380833 BBXQ8WY36 941 aaPredicted RBP13.47□□□□□ -0.25
CLCN4-202ENST00000380833 SAMD1Q6SPF0 538 aaPredicted RBP13.47□□□□□ -0.25
CLCN4-202ENST00000380833 IL27Q8NEV9 243 aa13.46□□□□□ -0.25
CLCN4-202ENST00000380833 TOMM22Q9NS69 142 aa13.46□□□□□ -0.25
CLCN4-202ENST00000380833 RDXP35241 583 aaKnown RBP13.46□□□□□ -0.25
CLCN4-202ENST00000380833 SYAP1Q96A49 352 aaPredicted RBP13.46□□□□□ -0.26
CLCN4-202ENST00000380833 GTF2E1P29083 439 aaPredicted RBP13.46□□□□□ -0.26
CLCN4-202ENST00000380833 MEX3CQ5U5Q3 659 aaKnown RBP13.45□□□□□ -0.26
CLCN4-202ENST00000380833 FBXW7Q969H0 707 aa13.45□□□□□ -0.26
CLCN4-202ENST00000380833 ZCCHC6Q5VYS8 1495 aaKnown RBP13.44□□□□□ -0.26
CLCN4-202ENST00000380833 PAXIP1Q6ZW49 1069 aaPredicted RBP13.44□□□□□ -0.26
CLCN4-202ENST00000380833 MORC1Q86VD1 984 aa13.44□□□□□ -0.26
CLCN4-202ENST00000380833 AEBP1Q8IUX7 1158 aa13.44□□□□□ -0.26
CLCN4-202ENST00000380833 TCERG1O14776 1098 aaKnown RBP13.44□□□□□ -0.26
CLCN4-202ENST00000380833 RASSF8Q8NHQ8 419 aa13.43□□□□□ -0.26
CLCN4-202ENST00000380833 CDCA8Q53HL2 280 aa13.43□□□□□ -0.26
CLCN4-202ENST00000380833 TSPYL1Q9H0U9 437 aa13.42□□□□□ -0.26
CLCN4-202ENST00000380833 FOXD4L1Q9NU39 408 aa13.42□□□□□ -0.26
CLCN4-202ENST00000380833 FOXD1Q16676 465 aa13.42□□□□□ -0.26
CLCN4-202ENST00000380833 NGEFQ8N5V2 710 aa13.42□□□□□ -0.26
CLCN4-202ENST00000380833 IRX3P78415 501 aaPredicted RBP13.41□□□□□ -0.26
CLCN4-202ENST00000380833 CNKSR2Q8WXI2 1034 aa13.41□□□□□ -0.26
CLCN4-202ENST00000380833 SLC4A10Q6U841 1118 aa13.4□□□□□ -0.26
CLCN4-202ENST00000380833 FOXD4L5Q5VV16 416 aaPredicted RBP13.4□□□□□ -0.26
CLCN4-202ENST00000380833 FOXD4L4Q8WXT5 416 aaPredicted RBP13.4□□□□□ -0.26
CLCN4-202ENST00000380833 DDX11L8A8MPP1 907 aa13.39□□□□□ -0.27
CLCN4-202ENST00000380833 SLKQ9H2G2 1235 aaPredicted RBP13.39□□□□□ -0.27
CLCN4-202ENST00000380833 SYTL4Q96C24 671 aaPredicted RBP13.38□□□□□ -0.27
CLCN4-202ENST00000380833 EIF4G1Q04637 1599 aaKnown RBP13.38□□□□□ -0.27
CLCN4-202ENST00000380833 MARCH6O60337 910 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms