RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 EIF2AK3Q9NZJ5 1116 aaKnown RBP6.84□□□□□ -1.31
VPS13A-206ENST00000376646 BOLA1Q9Y3E2 137 aa6.84□□□□□ -1.31
VPS13A-206ENST00000376646 SOX12O15370 315 aa6.83□□□□□ -1.32
VPS13A-206ENST00000376646 CHGAP10645 457 aaKnown RBP6.83□□□□□ -1.32
VPS13A-206ENST00000376646 FBXO22Q8NEZ5 403 aa6.83□□□□□ -1.32
VPS13A-206ENST00000376646 G3V3G9 751 aa6.8□□□□□ -1.32
VPS13A-206ENST00000376646 DCAF8L2P0C7V8 631 aa6.8□□□□□ -1.32
VPS13A-206ENST00000376646 MICALL2Q8IY33 904 aa6.8□□□□□ -1.32
VPS13A-206ENST00000376646 NLRP6P59044 892 aa6.79□□□□□ -1.32
VPS13A-206ENST00000376646 HS6ST3Q8IZP7 471 aa6.79□□□□□ -1.32
VPS13A-206ENST00000376646 TMEM92Q6UXU6 159 aa6.78□□□□□ -1.32
VPS13A-206ENST00000376646 PPP1R37O75864 691 aa6.77□□□□□ -1.33
VPS13A-206ENST00000376646 NKX1-1Q15270 411 aaPredicted RBP6.76□□□□□ -1.33
VPS13A-206ENST00000376646 Q6ZNB5 142 aa6.76□□□□□ -1.33
VPS13A-206ENST00000376646 RTN4Q9NQC3 1192 aaKnown RBP6.76□□□□□ -1.33
VPS13A-206ENST00000376646 FAM205CA6NFA0 338 aa6.76□□□□□ -1.33
VPS13A-206ENST00000376646 HCSTQ9UBK5 93 aa6.74□□□□□ -1.33
VPS13A-206ENST00000376646 LAPTM4AQ15012 233 aa6.73□□□□□ -1.33
VPS13A-206ENST00000376646 HOXB3P14651 431 aaPredicted RBP6.7□□□□□ -1.34
VPS13A-206ENST00000376646 STK17AQ9UEE5 414 aa6.69□□□□□ -1.34
VPS13A-206ENST00000376646 AMER1Q5JTC6 1135 aaPredicted RBP6.68□□□□□ -1.34
VPS13A-206ENST00000376646 SUZ12Q15022 739 aaKnown RBP6.67□□□□□ -1.34
VPS13A-206ENST00000376646 ANO8Q9HCE9 1232 aaPredicted RBP6.67□□□□□ -1.34
VPS13A-206ENST00000376646 C2orf72A6NCS6 295 aa6.67□□□□□ -1.34
VPS13A-206ENST00000376646 DNAJC5Q9H3Z4 198 aa6.66□□□□□ -1.34
VPS13A-206ENST00000376646 GTPBP6O43824 516 aaPredicted RBP6.65□□□□□ -1.35
VPS13A-206ENST00000376646 KIF3CO14782 793 aa6.64□□□□□ -1.35
VPS13A-206ENST00000376646 ZNF710Q8N1W2 664 aa6.63□□□□□ -1.35
VPS13A-206ENST00000376646 POTEB3A0JP26 581 aa6.62□□□□□ -1.35
VPS13A-206ENST00000376646 POTEBQ6S5H4 581 aa6.62□□□□□ -1.35
VPS13A-206ENST00000376646 DOK7Q18PE1 504 aa6.61□□□□□ -1.35
VPS13A-206ENST00000376646 TMC2Q8TDI7 906 aa6.61□□□□□ -1.35
VPS13A-206ENST00000376646 KHSRPQ92945 711 aaKnown RBP eCLIP6.61□□□□□ -1.35
VPS13A-206ENST00000376646 ARSIQ5FYB1 569 aa6.59□□□□□ -1.35
VPS13A-206ENST00000376646 HOXB1P14653 301 aaPredicted RBP6.59□□□□□ -1.36
VPS13A-206ENST00000376646 GPR153Q6NV75 609 aa6.58□□□□□ -1.36
VPS13A-206ENST00000376646 IFFO2Q5TF58 517 aa6.57□□□□□ -1.36
VPS13A-206ENST00000376646 DSG2Q14126 1118 aa6.57□□□□□ -1.36
VPS13A-206ENST00000376646 RIMBP2O15034 1052 aa6.56□□□□□ -1.36
VPS13A-206ENST00000376646 RYDENQ9NUL5 291 aaKnown RBP6.56□□□□□ -1.36
VPS13A-206ENST00000376646 NCKAP5LQ9HCH0 1330 aa6.56□□□□□ -1.36
VPS13A-206ENST00000376646 CADPS2Q86UW7 1296 aa6.56□□□□□ -1.36
VPS13A-206ENST00000376646 GPHNQ9NQX3 736 aaPredicted RBP6.56□□□□□ -1.36
VPS13A-206ENST00000376646 PLPP6Q8IY26 295 aa6.55□□□□□ -1.36
VPS13A-206ENST00000376646 BBXQ8WY36 941 aaPredicted RBP6.55□□□□□ -1.36
VPS13A-206ENST00000376646 ERBB3P21860 1342 aa6.54□□□□□ -1.36
VPS13A-206ENST00000376646 NUDT7P0C024 238 aa6.54□□□□□ -1.36
VPS13A-206ENST00000376646 FOXK1P85037 733 aa6.53□□□□□ -1.36
VPS13A-206ENST00000376646 VARS2Q5ST30 1063 aaKnown RBP6.53□□□□□ -1.36
VPS13A-206ENST00000376646 CRISPLD2Q9H0B8 497 aa6.53□□□□□ -1.36
VPS13A-206ENST00000376646 PCDHGA4Q9Y5G9 962 aa6.53□□□□□ -1.36
VPS13A-206ENST00000376646 ZSWIM6Q9HCJ5 1215 aa6.52□□□□□ -1.37
VPS13A-206ENST00000376646 TRAF7Q6Q0C0 670 aa6.52□□□□□ -1.37
VPS13A-206ENST00000376646 UPF1Q92900 1129 aaKnown RBP eCLIP6.51□□□□□ -1.37
VPS13A-206ENST00000376646 CFAP44Q96MT7 982 aa6.51□□□□□ -1.37
VPS13A-206ENST00000376646 LARP6Q9BRS8 491 aaKnown RBP6.51□□□□□ -1.37
VPS13A-206ENST00000376646 PPP1R15BQ5SWA1 713 aa6.5□□□□□ -1.37
VPS13A-206ENST00000376646 PAXIP1Q6ZW49 1069 aaPredicted RBP6.5□□□□□ -1.37
VPS13A-206ENST00000376646 SLC34A2O95436 690 aa6.5□□□□□ -1.37
VPS13A-206ENST00000376646 SPRYD3Q8NCJ5 442 aa6.49□□□□□ -1.37
VPS13A-206ENST00000376646 LHX6Q9UPM6 363 aa6.48□□□□□ -1.37
VPS13A-206ENST00000376646 ZNF316A6NFI3 1004 aaPredicted RBP6.48□□□□□ -1.37
VPS13A-206ENST00000376646 PDE4AP27815 886 aa6.48□□□□□ -1.37
VPS13A-206ENST00000376646 KRTAP4-8Q9BYQ9 185 aa6.48□□□□□ -1.37
VPS13A-206ENST00000376646 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.48□□□□□ -1.37
VPS13A-206ENST00000376646 ZNF787Q6DD87 383 aa6.47□□□□□ -1.37
VPS13A-206ENST00000376646 PTCD2Q8WV60 388 aaKnown RBP6.47□□□□□ -1.37
VPS13A-206ENST00000376646 DDX27Q96GQ7 796 aaKnown RBP6.46□□□□□ -1.37
VPS13A-206ENST00000376646 BTBD11A6QL63 1104 aa6.46□□□□□ -1.38
VPS13A-206ENST00000376646 KDM4FA0A1W2PPD8 638 aa6.45□□□□□ -1.38
VPS13A-206ENST00000376646 ZNF775Q96BV0 537 aaPredicted RBP6.45□□□□□ -1.38
VPS13A-206ENST00000376646 OXER1Q8TDS5 423 aa6.45□□□□□ -1.38
VPS13A-206ENST00000376646 MFSD10Q14728 455 aa6.44□□□□□ -1.38
VPS13A-206ENST00000376646 ZNF687Q8N1G0 1237 aa6.43□□□□□ -1.38
VPS13A-206ENST00000376646 EMILIN3Q9NT22 766 aa6.43□□□□□ -1.38
VPS13A-206ENST00000376646 AXIN2Q9Y2T1 843 aa6.43□□□□□ -1.38
VPS13A-206ENST00000376646 POTEEQ6S8J3 1075 aa6.43□□□□□ -1.38
VPS13A-206ENST00000376646 TBC1D12O60347 775 aa6.4□□□□□ -1.38
VPS13A-206ENST00000376646 KRTAP1-3Q8IUG1 177 aa6.39□□□□□ -1.39
VPS13A-206ENST00000376646 ANKRD13DQ6ZTN6 518 aa6.38□□□□□ -1.39
VPS13A-206ENST00000376646 TSHZ2Q9NRE2 1034 aa6.38□□□□□ -1.39
VPS13A-206ENST00000376646 EVI5O60447 810 aa6.38□□□□□ -1.39
VPS13A-206ENST00000376646 MAP3K9P80192 1104 aa6.38□□□□□ -1.39
VPS13A-206ENST00000376646 DPYSL4O14531 572 aa6.37□□□□□ -1.39
VPS13A-206ENST00000376646 PSEN2P49810 448 aa6.37□□□□□ -1.39
VPS13A-206ENST00000376646 INSM1Q01101 510 aaPredicted RBP6.36□□□□□ -1.39
VPS13A-206ENST00000376646 ZNF454Q8N9F8 522 aa6.36□□□□□ -1.39
VPS13A-206ENST00000376646 LSM11P83369 360 aaKnown RBP eCLIP6.36□□□□□ -1.39
VPS13A-206ENST00000376646 CAMK2BQ13554 666 aa6.35□□□□□ -1.39
VPS13A-206ENST00000376646 DMRTA1Q5VZB9 504 aa6.34□□□□□ -1.39
VPS13A-206ENST00000376646 A0A0G2JS52 829 aa6.34□□□□□ -1.39
VPS13A-206ENST00000376646 PPP4R3BQ5MIZ7 849 aa6.34□□□□□ -1.39
VPS13A-206ENST00000376646 KCNK17Q96T54 332 aa6.33□□□□□ -1.4
VPS13A-206ENST00000376646 FOSBP53539 338 aa6.33□□□□□ -1.4
VPS13A-206ENST00000376646 PSDA5PKW4 1024 aaPredicted RBP6.32□□□□□ -1.4
VPS13A-206ENST00000376646 ARHGAP33O14559 1287 aa6.32□□□□□ -1.4
VPS13A-206ENST00000376646 FAM181BA6NEQ2 426 aa6.32□□□□□ -1.4
VPS13A-206ENST00000376646 PBX2P40425 430 aa6.32□□□□□ -1.4
VPS13A-206ENST00000376646 ADAM33Q9BZ11 813 aa6.31□□□□□ -1.4
VPS13A-206ENST00000376646 WDR70Q9NW82 654 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms