RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 PCDH10Q9P2E7 1040 aa6.47□□□□□ -1.37
MCF2-202ENST00000370573 BICRAQ9NZM4 1560 aa6.45□□□□□ -1.38
MCF2-202ENST00000370573 NKX1-1Q15270 411 aaPredicted RBP6.45□□□□□ -1.38
MCF2-202ENST00000370573 PPP1R37O75864 691 aa6.44□□□□□ -1.38
MCF2-202ENST00000370573 MICALL2Q8IY33 904 aa6.44□□□□□ -1.38
MCF2-202ENST00000370573 FAM163AQ96GL9 167 aaPredicted RBP6.44□□□□□ -1.38
MCF2-202ENST00000370573 TMEM121BQ9BXQ6 578 aaPredicted RBP6.42□□□□□ -1.38
MCF2-202ENST00000370573 PLSCR2Q9NRY7 297 aa6.41□□□□□ -1.38
MCF2-202ENST00000370573 TMEM92Q6UXU6 159 aa6.4□□□□□ -1.38
MCF2-202ENST00000370573 HAP1P54257 671 aaPredicted RBP6.39□□□□□ -1.39
MCF2-202ENST00000370573 LCE2DQ5TA82 110 aaPredicted RBP6.37□□□□□ -1.39
MCF2-202ENST00000370573 CECR2Q9BXF3 1484 aa6.36□□□□□ -1.39
MCF2-202ENST00000370573 GTPBP6O43824 516 aaPredicted RBP6.36□□□□□ -1.39
MCF2-202ENST00000370573 DNAJC5Q9H3Z4 198 aa6.36□□□□□ -1.39
MCF2-202ENST00000370573 ST18O60284 1047 aa6.35□□□□□ -1.39
MCF2-202ENST00000370573 BCANQ96GW7 911 aa6.35□□□□□ -1.39
MCF2-202ENST00000370573 C2orf72A6NCS6 295 aa6.33□□□□□ -1.4
MCF2-202ENST00000370573 POTEMA6NI47 508 aa6.32□□□□□ -1.4
MCF2-202ENST00000370573 POTEGQ6S5H5 508 aa6.32□□□□□ -1.4
MCF2-202ENST00000370573 MARVELD3Q96A59 401 aa6.32□□□□□ -1.4
MCF2-202ENST00000370573 SNPHO15079 494 aa6.32□□□□□ -1.4
MCF2-202ENST00000370573 SUPT5HO00267 1087 aaKnown RBP6.31□□□□□ -1.4
MCF2-202ENST00000370573 BBXQ8WY36 941 aaPredicted RBP6.31□□□□□ -1.4
MCF2-202ENST00000370573 RYDENQ9NUL5 291 aaKnown RBP6.31□□□□□ -1.4
MCF2-202ENST00000370573 HOXB3P14651 431 aaPredicted RBP6.31□□□□□ -1.4
MCF2-202ENST00000370573 MROH2BQ7Z745 1585 aa6.31□□□□□ -1.4
MCF2-202ENST00000370573 RSF1Q96T23 1441 aaPredicted RBP6.3□□□□□ -1.4
MCF2-202ENST00000370573 TMC2Q8TDI7 906 aa6.3□□□□□ -1.4
MCF2-202ENST00000370573 ZNF710Q8N1W2 664 aa6.29□□□□□ -1.4
MCF2-202ENST00000370573 KIF3CO14782 793 aa6.29□□□□□ -1.4
MCF2-202ENST00000370573 CFAP44Q96MT7 982 aa6.29□□□□□ -1.4
MCF2-202ENST00000370573 BAZ1AQ9NRL2 1556 aaPredicted RBP6.29□□□□□ -1.4
MCF2-202ENST00000370573 KDM2AQ9Y2K7 1162 aa6.28□□□□□ -1.4
MCF2-202ENST00000370573 SMARCA4P51532 1647 aa6.27□□□□□ -1.41
MCF2-202ENST00000370573 TPRNQ4KMQ1 711 aa6.27□□□□□ -1.41
MCF2-202ENST00000370573 PAXIP1Q6ZW49 1069 aaPredicted RBP6.27□□□□□ -1.41
MCF2-202ENST00000370573 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.27□□□□□ -1.41
MCF2-202ENST00000370573 DOK7Q18PE1 504 aa6.27□□□□□ -1.41
MCF2-202ENST00000370573 VSIG10Q8N0Z9 540 aa6.26□□□□□ -1.41
MCF2-202ENST00000370573 SPRYD3Q8NCJ5 442 aa6.26□□□□□ -1.41
MCF2-202ENST00000370573 CADPS2Q86UW7 1296 aa6.25□□□□□ -1.41
MCF2-202ENST00000370573 KHSRPQ92945 711 aaKnown RBP eCLIP6.25□□□□□ -1.41
MCF2-202ENST00000370573 GPHNQ9NQX3 736 aaPredicted RBP6.25□□□□□ -1.41
MCF2-202ENST00000370573 EIF4G1Q04637 1599 aaKnown RBP6.25□□□□□ -1.41
MCF2-202ENST00000370573 DSG2Q14126 1118 aa6.25□□□□□ -1.41
MCF2-202ENST00000370573 EMP3P54852 163 aa6.24□□□□□ -1.41
MCF2-202ENST00000370573 ARSIQ5FYB1 569 aa6.24□□□□□ -1.41
MCF2-202ENST00000370573 NCKAP5LQ9HCH0 1330 aa6.24□□□□□ -1.41
MCF2-202ENST00000370573 WIZO95785 1651 aa6.24□□□□□ -1.41
MCF2-202ENST00000370573 FAM205CA6NFA0 338 aa6.23□□□□□ -1.41
MCF2-202ENST00000370573 RIMBP2O15034 1052 aa6.23□□□□□ -1.41
MCF2-202ENST00000370573 PLPP6Q8IY26 295 aa6.23□□□□□ -1.41
MCF2-202ENST00000370573 LARP6Q9BRS8 491 aaKnown RBP6.23□□□□□ -1.41
MCF2-202ENST00000370573 HOXB1P14653 301 aaPredicted RBP6.22□□□□□ -1.41
MCF2-202ENST00000370573 FOXK1P85037 733 aa6.22□□□□□ -1.41
MCF2-202ENST00000370573 GPR153Q6NV75 609 aa6.22□□□□□ -1.41
MCF2-202ENST00000370573 CRISPLD2Q9H0B8 497 aa6.22□□□□□ -1.41
MCF2-202ENST00000370573 ATAD2BQ9ULI0 1458 aa6.21□□□□□ -1.42
MCF2-202ENST00000370573 POTEB3A0JP26 581 aa6.21□□□□□ -1.42
MCF2-202ENST00000370573 POTEBQ6S5H4 581 aa6.21□□□□□ -1.42
MCF2-202ENST00000370573 PDE4AP27815 886 aa6.2□□□□□ -1.42
MCF2-202ENST00000370573 PEG3Q9GZU2 1588 aa6.2□□□□□ -1.42
MCF2-202ENST00000370573 CDAN1Q8IWY9 1227 aa6.2□□□□□ -1.42
MCF2-202ENST00000370573 NUDT7P0C024 238 aa6.19□□□□□ -1.42
MCF2-202ENST00000370573 PPP1R15BQ5SWA1 713 aa6.19□□□□□ -1.42
MCF2-202ENST00000370573 HS3ST6Q96QI5 342 aa6.19□□□□□ -1.42
MCF2-202ENST00000370573 ERBB3P21860 1342 aa6.19□□□□□ -1.42
MCF2-202ENST00000370573 UPF1Q92900 1129 aaKnown RBP eCLIP6.19□□□□□ -1.42
MCF2-202ENST00000370573 PCDHGA4Q9Y5G9 962 aa6.18□□□□□ -1.42
MCF2-202ENST00000370573 CC2D2AQ9P2K1 1620 aa6.18□□□□□ -1.42
MCF2-202ENST00000370573 DDX27Q96GQ7 796 aaKnown RBP6.18□□□□□ -1.42
MCF2-202ENST00000370573 ZSWIM6Q9HCJ5 1215 aa6.18□□□□□ -1.42
MCF2-202ENST00000370573 SMARCA2P51531 1590 aa6.18□□□□□ -1.42
MCF2-202ENST00000370573 VARS2Q5ST30 1063 aaKnown RBP6.17□□□□□ -1.42
MCF2-202ENST00000370573 NCAPD3P42695 1498 aa6.17□□□□□ -1.42
MCF2-202ENST00000370573 SLC34A2O95436 690 aa6.16□□□□□ -1.42
MCF2-202ENST00000370573 TOP2AP11388 1531 aaKnown RBP6.16□□□□□ -1.42
MCF2-202ENST00000370573 BAZ1BQ9UIG0 1483 aaKnown RBP6.15□□□□□ -1.42
MCF2-202ENST00000370573 PTCD2Q8WV60 388 aaKnown RBP6.15□□□□□ -1.42
MCF2-202ENST00000370573 TSHZ2Q9NRE2 1034 aa6.14□□□□□ -1.43
MCF2-202ENST00000370573 LHX6Q9UPM6 363 aa6.14□□□□□ -1.43
MCF2-202ENST00000370573 HMGXB3Q12766 1538 aa6.13□□□□□ -1.43
MCF2-202ENST00000370573 ZNF316A6NFI3 1004 aaPredicted RBP6.13□□□□□ -1.43
MCF2-202ENST00000370573 MFSD10Q14728 455 aa6.13□□□□□ -1.43
MCF2-202ENST00000370573 TIMELESSQ9UNS1 1208 aa6.13□□□□□ -1.43
MCF2-202ENST00000370573 CCDC88BA6NC98 1476 aa6.12□□□□□ -1.43
MCF2-202ENST00000370573 OXER1Q8TDS5 423 aa6.12□□□□□ -1.43
MCF2-202ENST00000370573 EMILIN3Q9NT22 766 aa6.12□□□□□ -1.43
MCF2-202ENST00000370573 TBC1D12O60347 775 aa6.12□□□□□ -1.43
MCF2-202ENST00000370573 MAP3K9P80192 1104 aa6.1□□□□□ -1.43
MCF2-202ENST00000370573 KDM4FA0A1W2PPD8 638 aa6.1□□□□□ -1.43
MCF2-202ENST00000370573 KRTAP3-3Q9BYR6 98 aa6.1□□□□□ -1.43
MCF2-202ENST00000370573 KRTAP3-2Q9BYR7 98 aa6.1□□□□□ -1.43
MCF2-202ENST00000370573 AXIN2Q9Y2T1 843 aa6.09□□□□□ -1.43
MCF2-202ENST00000370573 WDR70Q9NW82 654 aa6.09□□□□□ -1.44
MCF2-202ENST00000370573 ZNF687Q8N1G0 1237 aa6.08□□□□□ -1.44
MCF2-202ENST00000370573 DPYSL4O14531 572 aa6.08□□□□□ -1.44
MCF2-202ENST00000370573 EVI5O60447 810 aa6.08□□□□□ -1.44
MCF2-202ENST00000370573 TULP1O00294 542 aaPredicted RBP6.07□□□□□ -1.44
MCF2-202ENST00000370573 POTEEQ6S8J3 1075 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms