RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 DISP3Q9P2K9 1392 aa5.33□□□□□ -1.56
USH2A-202ENST00000366942 NACADO15069 1562 aa5.32□□□□□ -1.56
USH2A-202ENST00000366942 MAPK8IP3Q9UPT6 1336 aa5.32□□□□□ -1.56
USH2A-202ENST00000366942 C11orf95C9JLR9 678 aaPredicted RBP5.32□□□□□ -1.56
USH2A-202ENST00000366942 RBM27Q9P2N5 1060 aaKnown RBP5.32□□□□□ -1.56
USH2A-202ENST00000366942 PPM1GO15355 546 aaPredicted RBP5.32□□□□□ -1.56
USH2A-202ENST00000366942 GOLGA6L2Q8N9W4 650 aaPredicted RBP5.32□□□□□ -1.56
USH2A-202ENST00000366942 OS9Q13438 667 aaPredicted RBP5.3□□□□□ -1.56
USH2A-202ENST00000366942 ZRSR1Q15695 479 aaKnown RBP5.3□□□□□ -1.56
USH2A-202ENST00000366942 BCL11BQ9C0K0 894 aaPredicted RBP5.3□□□□□ -1.56
USH2A-202ENST00000366942 SYTL4Q96C24 671 aaPredicted RBP5.3□□□□□ -1.56
USH2A-202ENST00000366942 SPDYE4A6NLX3 237 aa5.3□□□□□ -1.56
USH2A-202ENST00000366942 R3HCC1Q9Y3T6 440 aaKnown RBP5.29□□□□□ -1.56
USH2A-202ENST00000366942 NF2P35240 595 aa5.29□□□□□ -1.56
USH2A-202ENST00000366942 ZBTB4Q9P1Z0 1013 aaPredicted RBP5.29□□□□□ -1.56
USH2A-202ENST00000366942 SPAG9O60271 1321 aaKnown RBP5.29□□□□□ -1.56
USH2A-202ENST00000366942 GORABQ5T7V8 394 aa5.29□□□□□ -1.56
USH2A-202ENST00000366942 KCNJ4P48050 445 aa5.28□□□□□ -1.56
USH2A-202ENST00000366942 GPRASP1Q5JY77 1395 aa5.28□□□□□ -1.56
USH2A-202ENST00000366942 NEUROD1Q13562 356 aa5.28□□□□□ -1.56
USH2A-202ENST00000366942 UPF2Q9HAU5 1272 aaKnown RBP5.28□□□□□ -1.56
USH2A-202ENST00000366942 CLEC11AQ9Y240 323 aa5.28□□□□□ -1.56
USH2A-202ENST00000366942 TTC5Q8N0Z6 440 aa5.28□□□□□ -1.56
USH2A-202ENST00000366942 CEP162Q5TB80 1403 aa5.27□□□□□ -1.57
USH2A-202ENST00000366942 HSP90AA1P07900 732 aaKnown RBP5.27□□□□□ -1.57
USH2A-202ENST00000366942 TMOD2Q9NZR1 351 aa5.27□□□□□ -1.57
USH2A-202ENST00000366942 CCNB3Q8WWL7 1395 aa5.27□□□□□ -1.57
USH2A-202ENST00000366942 AMPHP49418 695 aa5.27□□□□□ -1.57
USH2A-202ENST00000366942 CALD1Q05682 793 aaKnown RBP5.27□□□□□ -1.57
USH2A-202ENST00000366942 GPR162Q16538 588 aa5.27□□□□□ -1.57
USH2A-202ENST00000366942 CRBNQ96SW2 442 aa5.27□□□□□ -1.57
USH2A-202ENST00000366942 FGD1P98174 961 aa5.27□□□□□ -1.57
USH2A-202ENST00000366942 TTLL12Q14166 644 aaPredicted RBP5.27□□□□□ -1.57
USH2A-202ENST00000366942 C1orf141Q5JVX7 400 aa5.27□□□□□ -1.57
USH2A-202ENST00000366942 PPP6R1Q9UPN7 881 aa5.26□□□□□ -1.57
USH2A-202ENST00000366942 RAPGEF4Q8WZA2 1011 aa5.26□□□□□ -1.57
USH2A-202ENST00000366942 KIF3BO15066 747 aa5.26□□□□□ -1.57
USH2A-202ENST00000366942 STK32BQ9NY57 414 aa5.25□□□□□ -1.57
USH2A-202ENST00000366942 TERF2IPQ9NYB0 399 aa5.25□□□□□ -1.57
USH2A-202ENST00000366942 CCDC34Q96HJ3 373 aa5.25□□□□□ -1.57
USH2A-202ENST00000366942 JPH4Q96JJ6 628 aa5.25□□□□□ -1.57
USH2A-202ENST00000366942 PTPRGP23470 1445 aa5.25□□□□□ -1.57
USH2A-202ENST00000366942 SOX12O15370 315 aa5.25□□□□□ -1.57
USH2A-202ENST00000366942 KDM2AQ9Y2K7 1162 aa5.25□□□□□ -1.57
USH2A-202ENST00000366942 KIF27Q86VH2 1401 aa5.24□□□□□ -1.57
USH2A-202ENST00000366942 ABCC8Q09428 1581 aa5.24□□□□□ -1.57
USH2A-202ENST00000366942 LRRFIP1Q32MZ4 808 aaKnown RBP5.24□□□□□ -1.57
USH2A-202ENST00000366942 L1TD1Q5T7N2 865 aaKnown RBP5.24□□□□□ -1.57
USH2A-202ENST00000366942 ZNF772Q68DY9 489 aaPredicted RBP5.24□□□□□ -1.57
USH2A-202ENST00000366942 FBXW7Q969H0 707 aa5.24□□□□□ -1.57
USH2A-202ENST00000366942 LMOD1P29536 600 aaPredicted RBP5.24□□□□□ -1.57
USH2A-202ENST00000366942 CASC1Q6TDU7 716 aa5.24□□□□□ -1.57
USH2A-202ENST00000366942 MS4A1P11836 297 aa5.24□□□□□ -1.57
USH2A-202ENST00000366942 VGFO15240 615 aaPredicted RBP5.24□□□□□ -1.57
USH2A-202ENST00000366942 MARCH6O60337 910 aa5.24□□□□□ -1.57
USH2A-202ENST00000366942 PAF1Q8N7H5 531 aa5.24□□□□□ -1.57
USH2A-202ENST00000366942 TONSLQ96HA7 1378 aa5.24□□□□□ -1.57
USH2A-202ENST00000366942 ANP32CO43423 234 aa5.24□□□□□ -1.57
USH2A-202ENST00000366942 DNAJC5Q9H3Z4 198 aa5.23□□□□□ -1.57
USH2A-202ENST00000366942 KNSTRNQ9Y448 316 aa5.23□□□□□ -1.57
USH2A-202ENST00000366942 CHAF1AQ13111 956 aaPredicted RBP5.23□□□□□ -1.57
USH2A-202ENST00000366942 VPS37DQ86XT2 251 aa5.23□□□□□ -1.57
USH2A-202ENST00000366942 CABP2Q9NPB3 220 aa5.23□□□□□ -1.57
USH2A-202ENST00000366942 CCDC43Q96MW1 224 aaKnown RBP5.23□□□□□ -1.57
USH2A-202ENST00000366942 BIN2Q9UBW5 565 aaPredicted RBP5.23□□□□□ -1.57
USH2A-202ENST00000366942 CHIC2Q9UKJ5 165 aa5.23□□□□□ -1.57
USH2A-202ENST00000366942 ZBTB24O43167 697 aaPredicted RBP5.23□□□□□ -1.57
USH2A-202ENST00000366942 LRPPRCP42704 1394 aaKnown RBP5.23□□□□□ -1.57
USH2A-202ENST00000366942 WRNQ14191 1432 aaPredicted RBP eCLIP5.22□□□□□ -1.57
USH2A-202ENST00000366942 PPARGC1BQ86YN6 1023 aaKnown RBP5.22□□□□□ -1.57
USH2A-202ENST00000366942 VPS53Q5VIR6 699 aa5.22□□□□□ -1.57
USH2A-202ENST00000366942 ANP32BQ92688 251 aaKnown RBP5.22□□□□□ -1.57
USH2A-202ENST00000366942 DNAI2Q9GZS0 605 aa5.22□□□□□ -1.57
USH2A-202ENST00000366942 PRDM11Q9NQV5 511 aa5.22□□□□□ -1.57
USH2A-202ENST00000366942 RGL3Q3MIN7 710 aa5.21□□□□□ -1.57
USH2A-202ENST00000366942 KIF22Q14807 665 aa5.21□□□□□ -1.57
USH2A-202ENST00000366942 CADPS2Q86UW7 1296 aa5.21□□□□□ -1.58
USH2A-202ENST00000366942 TXNDC2Q86VQ3 553 aa5.21□□□□□ -1.58
USH2A-202ENST00000366942 STK26Q9P289 416 aa5.21□□□□□ -1.58
USH2A-202ENST00000366942 GRM1Q13255 1194 aa5.2□□□□□ -1.58
USH2A-202ENST00000366942 LMTK3Q96Q04 1460 aa5.2□□□□□ -1.58
USH2A-202ENST00000366942 PMFBP1Q8TBY8 1022 aa5.2□□□□□ -1.58
USH2A-202ENST00000366942 CEP89Q96ST8 783 aa5.2□□□□□ -1.58
USH2A-202ENST00000366942 STK31Q9BXU1 1019 aa5.2□□□□□ -1.58
USH2A-202ENST00000366942 TRIM21P19474 475 aaKnown RBP5.2□□□□□ -1.58
USH2A-202ENST00000366942 TEFQ10587 303 aa5.2□□□□□ -1.58
USH2A-202ENST00000366942 CHMP4CQ96CF2 233 aa5.2□□□□□ -1.58
USH2A-202ENST00000366942 MPHOSPH6Q99547 160 aaKnown RBP5.2□□□□□ -1.58
USH2A-202ENST00000366942 DPY19L2Q6NUT2 758 aa5.2□□□□□ -1.58
USH2A-202ENST00000366942 CEP164Q9UPV0 1460 aa5.2□□□□□ -1.58
USH2A-202ENST00000366942 UTP3Q9NQZ2 479 aaKnown RBP eCLIP5.19□□□□□ -1.58
USH2A-202ENST00000366942 PRKAG2Q9UGJ0 569 aa5.19□□□□□ -1.58
USH2A-202ENST00000366942 EIF3AQ14152 1382 aaKnown RBP5.19□□□□□ -1.58
USH2A-202ENST00000366942 SETD5Q9C0A6 1442 aa5.19□□□□□ -1.58
USH2A-202ENST00000366942 LPXNO60711 386 aa5.19□□□□□ -1.58
USH2A-202ENST00000366942 LMOD3Q0VAK6 560 aa5.19□□□□□ -1.58
USH2A-202ENST00000366942 AXDND1Q5T1B0 1012 aaPredicted RBP5.19□□□□□ -1.58
USH2A-202ENST00000366942 NLRP2Q9NX02 1062 aa5.19□□□□□ -1.58
USH2A-202ENST00000366942 NEXNQ0ZGT2 675 aa5.19□□□□□ -1.58
USH2A-202ENST00000366942 HDAC9Q9UKV0 1011 aa5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms