RNA–Protein interactions for RNA: ENST00000358278.7

TPM1-206, Transcript of tropomyosin 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TPM1, Length 1,717 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-206ENST00000358278 GPATCH8Q9UKJ3 1502 aaKnown RBP23.58■■□□□ 1.37
TPM1-206ENST00000358278 PLCH2O75038 1416 aa23.58■■□□□ 1.36
TPM1-206ENST00000358278 TEX14Q8IWB6 1497 aa23.57■■□□□ 1.36
TPM1-206ENST00000358278 MYOM3Q5VTT5 1437 aa23.54■■□□□ 1.36
TPM1-206ENST00000358278 PHLDB1Q86UU1 1377 aa23.54■■□□□ 1.36
TPM1-206ENST00000358278 FANCAO15360 1455 aa23.54■■□□□ 1.36
TPM1-206ENST00000358278 CFDP1Q9UEE9 299 aaPredicted RBP23.5■■□□□ 1.35
TPM1-206ENST00000358278 NEO1Q92859 1461 aa23.49■■□□□ 1.35
TPM1-206ENST00000358278 EFCAB2Q5VUJ9 269 aa23.48■■□□□ 1.35
TPM1-206ENST00000358278 SAMD9LQ8IVG5 1584 aa23.48■■□□□ 1.35
TPM1-206ENST00000358278 PTPN23Q9H3S7 1636 aa23.47■■□□□ 1.35
TPM1-206ENST00000358278 FGD6Q6ZV73 1430 aa23.46■■□□□ 1.35
TPM1-206ENST00000358278 MIA2Q96PC5 1412 aa23.46■■□□□ 1.35
TPM1-206ENST00000358278 ZNF777Q9ULD5 760 aaPredicted RBP23.46■■□□□ 1.35
TPM1-206ENST00000358278 AKNAQ7Z591 1439 aa23.44■■□□□ 1.34
TPM1-206ENST00000358278 CAMSAP2Q08AD1 1489 aa23.44■■□□□ 1.34
TPM1-206ENST00000358278 ABCC1P33527 1531 aa23.43■■□□□ 1.34
TPM1-206ENST00000358278 ADGRL1O94910 1474 aa23.43■■□□□ 1.34
TPM1-206ENST00000358278 PLEKHH2Q8IVE3 1493 aa23.4■■□□□ 1.34
TPM1-206ENST00000358278 SYCP2Q9BX26 1530 aa23.4■■□□□ 1.34
TPM1-206ENST00000358278 KDM6BO15054 1643 aa23.38■■□□□ 1.33
TPM1-206ENST00000358278 ZNF644Q9H582 1327 aaPredicted RBP23.38■■□□□ 1.33
TPM1-206ENST00000358278 TCOF1Q13428 1488 aaKnown RBP23.36■■□□□ 1.33
TPM1-206ENST00000358278 RICTORQ6R327 1708 aa23.36■■□□□ 1.33
TPM1-206ENST00000358278 SCAPERQ9BY12 1400 aa23.36■■□□□ 1.33
TPM1-206ENST00000358278 RRBP1Q9P2E9 1410 aaKnown RBP23.34■■□□□ 1.33
TPM1-206ENST00000358278 KIAA1107Q9UPP5 1409 aa23.34■■□□□ 1.33
TPM1-206ENST00000358278 FAM50AQ14320 339 aaKnown RBP23.33■■□□□ 1.33
TPM1-206ENST00000358278 ARHGEF12Q9NZN5 1544 aa23.33■■□□□ 1.32
TPM1-206ENST00000358278 DENND4BO75064 1496 aaPredicted RBP23.33■■□□□ 1.32
TPM1-206ENST00000358278 ARHGEF5Q12774 1597 aa23.32■■□□□ 1.32
TPM1-206ENST00000358278 POGZQ7Z3K3 1410 aa23.31■■□□□ 1.32
TPM1-206ENST00000358278 CROCC2H7BZ55 1655 aa23.3■■□□□ 1.32
TPM1-206ENST00000358278 ZNF518AQ6AHZ1 1483 aa23.3■■□□□ 1.32
TPM1-206ENST00000358278 FRMPD1Q5SYB0 1578 aa23.3■■□□□ 1.32
TPM1-206ENST00000358278 HNRNPMP52272 730 aaKnown RBP eCLIP23.3■■□□□ 1.32
TPM1-206ENST00000358278 DNMT1P26358 1616 aaKnown RBP23.3■■□□□ 1.32
TPM1-206ENST00000358278 MBD5Q9P267 1494 aa23.28■■□□□ 1.32
TPM1-206ENST00000358278 COL17A1Q9UMD9 1497 aaPredicted RBP23.28■■□□□ 1.32
TPM1-206ENST00000358278 CCDC141Q6ZP82 1450 aa23.28■■□□□ 1.32
TPM1-206ENST00000358278 TRAPPC8Q9Y2L5 1435 aa23.27■■□□□ 1.32
TPM1-206ENST00000358278 KDM5CP41229 1560 aa23.26■■□□□ 1.31
TPM1-206ENST00000358278 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.25■■□□□ 1.311e-7■■□□□ 13.6
TPM1-206ENST00000358278 RAPGEF3O95398 923 aa23.25■■□□□ 1.31
TPM1-206ENST00000358278 HECW2Q9P2P5 1572 aa23.23■■□□□ 1.31
TPM1-206ENST00000358278 AFAP1Q8N556 730 aa23.22■■□□□ 1.31
TPM1-206ENST00000358278 ZMYM4Q5VZL5 1548 aa23.22■■□□□ 1.31
TPM1-206ENST00000358278 DAPK1P53355 1430 aa23.22■■□□□ 1.31
TPM1-206ENST00000358278 RSPH4AQ5TD94 716 aa23.22■■□□□ 1.31
TPM1-206ENST00000358278 ADGBQ8N7X0 1667 aa23.2■■□□□ 1.3
TPM1-206ENST00000358278 INO80Q9ULG1 1556 aaPredicted RBP23.2■■□□□ 1.3
TPM1-206ENST00000358278 ABCC5O15440 1437 aa23.19■■□□□ 1.3
TPM1-206ENST00000358278 KIDINS220Q9ULH0 1771 aa23.19■■□□□ 1.3
TPM1-206ENST00000358278 ATP7AQ04656 1500 aa23.18■■□□□ 1.3
TPM1-206ENST00000358278 ZFYVE16Q7Z3T8 1539 aa23.18■■□□□ 1.3
TPM1-206ENST00000358278 SHANK2Q9UPX8 1470 aa23.18■■□□□ 1.3
TPM1-206ENST00000358278 MAST1Q9Y2H9 1570 aa23.17■■□□□ 1.3
TPM1-206ENST00000358278 TSPY4P0CV99 314 aa23.17■■□□□ 1.3
TPM1-206ENST00000358278 TSPY10P0CW01 314 aa23.17■■□□□ 1.3
TPM1-206ENST00000358278 MYT1LQ9UL68 1186 aa23.17■■□□□ 1.3
TPM1-206ENST00000358278 SPAG9O60271 1321 aaKnown RBP23.17■■□□□ 1.3
TPM1-206ENST00000358278 ITGAEP38570 1179 aa23.16■■□□□ 1.3
TPM1-206ENST00000358278 C9orf84Q5VXU9 1444 aa23.16■■□□□ 1.3
TPM1-206ENST00000358278 MLH3Q9UHC1 1453 aa23.15■■□□□ 1.3
TPM1-206ENST00000358278 MAGI2Q86UL8 1455 aa23.13■■□□□ 1.29
TPM1-206ENST00000358278 ARHGEF40Q8TER5 1519 aa23.13■■□□□ 1.29
TPM1-206ENST00000358278 ABCA6Q8N139 1617 aa23.13■■□□□ 1.29
TPM1-206ENST00000358278 PLXNC1O60486 1568 aa23.11■■□□□ 1.29
TPM1-206ENST00000358278 RTEL1-TNFRSF6BF6WH68 1400 aa23.11■■□□□ 1.29
TPM1-206ENST00000358278 DIP2CQ9Y2E4 1556 aa23.1■■□□□ 1.29
TPM1-206ENST00000358278 PTPRKQ15262 1439 aa23.09■■□□□ 1.29
TPM1-206ENST00000358278 CHIC2Q9UKJ5 165 aa23.09■■□□□ 1.29
TPM1-206ENST00000358278 YEATS2Q9ULM3 1422 aa23.09■■□□□ 1.29
TPM1-206ENST00000358278 ADGRL2O95490 1459 aa23.06■■□□□ 1.28
TPM1-206ENST00000358278 ANKRD30AQ9BXX3 1397 aa23.06■■□□□ 1.28
TPM1-206ENST00000358278 TRIM26Q12899 539 aaPredicted RBP23.05■■□□□ 1.28
TPM1-206ENST00000358278 ROCK1Q13464 1354 aa23.01■■□□□ 1.27
TPM1-206ENST00000358278 NCOA1Q15788 1441 aa23.01■■□□□ 1.27
TPM1-206ENST00000358278 GCC2Q8IWJ2 1684 aa23.01■■□□□ 1.27
TPM1-206ENST00000358278 KIF15Q9NS87 1388 aa23.01■■□□□ 1.27
TPM1-206ENST00000358278 ATP10AO60312 1499 aa23.01■■□□□ 1.27
TPM1-206ENST00000358278 DUOX2Q9NRD8 1548 aa22.99■■□□□ 1.27
TPM1-206ENST00000358278 RRP7BPQ9NSQ0 103 aa22.99■■□□□ 1.27
TPM1-206ENST00000358278 REREQ9P2R6 1566 aa22.99■■□□□ 1.27
TPM1-206ENST00000358278 A2MP01023 1474 aa22.98■■□□□ 1.27
TPM1-206ENST00000358278 SIGLEC1Q9BZZ2 1709 aa22.97■■□□□ 1.27
TPM1-206ENST00000358278 EIF2AK4Q9P2K8 1649 aaKnown RBP22.94■■□□□ 1.26
TPM1-206ENST00000358278 DHX29Q7Z478 1369 aaKnown RBP22.93■■□□□ 1.26
TPM1-206ENST00000358278 HFM1A2PYH4 1435 aa22.92■■□□□ 1.26
TPM1-206ENST00000358278 ERBINQ96RT1 1412 aa22.92■■□□□ 1.26
TPM1-206ENST00000358278 BCORL1Q5H9F3 1711 aa22.91■■□□□ 1.26
TPM1-206ENST00000358278 NAIPQ13075 1403 aa22.9■■□□□ 1.26
TPM1-206ENST00000358278 ANKRD50Q9ULJ7 1429 aa22.9■■□□□ 1.26
TPM1-206ENST00000358278 AGLP35573 1532 aa22.89■■□□□ 1.25
TPM1-206ENST00000358278 ARID4BQ4LE39 1312 aaPredicted RBP22.87■■□□□ 1.25
TPM1-206ENST00000358278 RNF17Q9BXT8 1623 aaKnown RBP22.85■■□□□ 1.25
TPM1-206ENST00000358278 DEPDC5O75140 1603 aa22.83■■□□□ 1.25
TPM1-206ENST00000358278 KIF3BO15066 747 aa22.83■■□□□ 1.25
TPM1-206ENST00000358278 PCGF6Q9BYE7 350 aa22.82■■□□□ 1.24
TPM1-206ENST00000358278 SETD5Q9C0A6 1442 aa22.82■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms