RNA–Protein interactions for RNA: ENST00000346501.8

TSPAN4-201, Transcript of tetraspanin 4, humanhuman

TSL 3 BASIC

Gene TSPAN4, Length 882 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-201ENST00000346501 CCNB3Q8WWL7 1395 aa24.9■■□□□ 1.58
TSPAN4-201ENST00000346501 MYT1LQ9UL68 1186 aa24.89■■□□□ 1.58
TSPAN4-201ENST00000346501 RICTORQ6R327 1708 aa24.89■■□□□ 1.57
TSPAN4-201ENST00000346501 FRMPD1Q5SYB0 1578 aa24.88■■□□□ 1.57
TSPAN4-201ENST00000346501 POGZQ7Z3K3 1410 aa24.88■■□□□ 1.57
TSPAN4-201ENST00000346501 PREX2Q70Z35 1606 aa24.88■■□□□ 1.57
TSPAN4-201ENST00000346501 ARID4BQ4LE39 1312 aaPredicted RBP24.87■■□□□ 1.57
TSPAN4-201ENST00000346501 EHBP1L1Q8N3D4 1523 aa24.87■■□□□ 1.57
TSPAN4-201ENST00000346501 APLP2Q06481 763 aa24.87■■□□□ 1.57
TSPAN4-201ENST00000346501 MAGI2Q86UL8 1455 aa24.87■■□□□ 1.57
TSPAN4-201ENST00000346501 ZNF777Q9ULD5 760 aaPredicted RBP24.86■■□□□ 1.57
TSPAN4-201ENST00000346501 CFDP1Q9UEE9 299 aaPredicted RBP24.85■■□□□ 1.57
TSPAN4-201ENST00000346501 ZNF518AQ6AHZ1 1483 aa24.84■■□□□ 1.57
TSPAN4-201ENST00000346501 CDC42BPBQ9Y5S2 1711 aa24.84■■□□□ 1.57
TSPAN4-201ENST00000346501 ZMYM4Q5VZL5 1548 aa24.84■■□□□ 1.57
TSPAN4-201ENST00000346501 ZFYVE16Q7Z3T8 1539 aa24.81■■□□□ 1.56
TSPAN4-201ENST00000346501 ARHGEF40Q8TER5 1519 aa24.81■■□□□ 1.56
TSPAN4-201ENST00000346501 GPATCH8Q9UKJ3 1502 aaKnown RBP24.81■■□□□ 1.56
TSPAN4-201ENST00000346501 CDC42BPAQ5VT25 1732 aa24.81■■□□□ 1.56
TSPAN4-201ENST00000346501 TIAM1Q13009 1591 aa24.8■■□□□ 1.56
TSPAN4-201ENST00000346501 AFAP1Q8N556 730 aa24.78■■□□□ 1.56
TSPAN4-201ENST00000346501 PLEKHH2Q8IVE3 1493 aa24.77■■□□□ 1.56
TSPAN4-201ENST00000346501 ABCC1P33527 1531 aa24.76■■□□□ 1.55
TSPAN4-201ENST00000346501 SUPT6HQ7KZ85 1726 aaKnown RBP24.75■■□□□ 1.55
TSPAN4-201ENST00000346501 YEATS2Q9ULM3 1422 aa24.74■■□□□ 1.55
TSPAN4-201ENST00000346501 MAP3K1Q13233 1512 aa24.74■■□□□ 1.55
TSPAN4-201ENST00000346501 ITSN2Q9NZM3 1697 aa24.73■■□□□ 1.55
TSPAN4-201ENST00000346501 ATP10AO60312 1499 aa24.71■■□□□ 1.55
TSPAN4-201ENST00000346501 KDM5CP41229 1560 aa24.71■■□□□ 1.55
TSPAN4-201ENST00000346501 NCOA2Q15596 1464 aa24.7■■□□□ 1.55
TSPAN4-201ENST00000346501 LRRC9Q6ZRR7 1453 aa24.7■■□□□ 1.55
TSPAN4-201ENST00000346501 KIAA1107Q9UPP5 1409 aa24.69■■□□□ 1.54
TSPAN4-201ENST00000346501 TRAPPC8Q9Y2L5 1435 aa24.69■■□□□ 1.54
TSPAN4-201ENST00000346501 HECW2Q9P2P5 1572 aa24.69■■□□□ 1.54
TSPAN4-201ENST00000346501 HNRNPMP52272 730 aaKnown RBP eCLIP24.69■■□□□ 1.54
TSPAN4-201ENST00000346501 C9orf84Q5VXU9 1444 aa24.69■■□□□ 1.54
TSPAN4-201ENST00000346501 SAMD9LQ8IVG5 1584 aa24.68■■□□□ 1.54
TSPAN4-201ENST00000346501 MLH3Q9UHC1 1453 aa24.68■■□□□ 1.54
TSPAN4-201ENST00000346501 SYCP2Q9BX26 1530 aa24.66■■□□□ 1.54
TSPAN4-201ENST00000346501 ARHGEF12Q9NZN5 1544 aa24.66■■□□□ 1.54
TSPAN4-201ENST00000346501 SPAG9O60271 1321 aaKnown RBP24.66■■□□□ 1.54
TSPAN4-201ENST00000346501 BCORL1Q5H9F3 1711 aa24.64■■□□□ 1.53
TSPAN4-201ENST00000346501 MLECQ14165 292 aa24.63■■□□□ 1.53
TSPAN4-201ENST00000346501 KANK4Q5T7N3 995 aaPredicted RBP24.62■■□□□ 1.53
TSPAN4-201ENST00000346501 RSPH4AQ5TD94 716 aa24.61■■□□□ 1.53
TSPAN4-201ENST00000346501 ADAMTSL3P82987 1691 aa24.6■■□□□ 1.53
TSPAN4-201ENST00000346501 ZNF644Q9H582 1327 aaPredicted RBP24.59■■□□□ 1.53
TSPAN4-201ENST00000346501 DIP2CQ9Y2E4 1556 aa24.57■■□□□ 1.52
TSPAN4-201ENST00000346501 ESF1Q9H501 851 aaKnown RBP24.56■■□□□ 1.52
TSPAN4-201ENST00000346501 PTPRMP28827 1452 aa24.56■■□□□ 1.52
TSPAN4-201ENST00000346501 MADDQ8WXG6 1647 aa24.54■■□□□ 1.52
TSPAN4-201ENST00000346501 CAMSAP2Q08AD1 1489 aa24.54■■□□□ 1.52
TSPAN4-201ENST00000346501 REREQ9P2R6 1566 aa24.54■■□□□ 1.52
TSPAN4-201ENST00000346501 ABCA6Q8N139 1617 aa24.53■■□□□ 1.52
TSPAN4-201ENST00000346501 KIDINS220Q9ULH0 1771 aa24.52■■□□□ 1.52
TSPAN4-201ENST00000346501 ATP7AQ04656 1500 aa24.52■■□□□ 1.52
TSPAN4-201ENST00000346501 TSPY4P0CV99 314 aa24.52■■□□□ 1.52
TSPAN4-201ENST00000346501 TSPY10P0CW01 314 aa24.52■■□□□ 1.52
TSPAN4-201ENST00000346501 MYOM3Q5VTT5 1437 aa24.52■■□□□ 1.52
TSPAN4-201ENST00000346501 MIA2Q96PC5 1412 aa24.52■■□□□ 1.52
TSPAN4-201ENST00000346501 CCDC141Q6ZP82 1450 aa24.5■■□□□ 1.51
TSPAN4-201ENST00000346501 MBD5Q9P267 1494 aa24.5■■□□□ 1.51
TSPAN4-201ENST00000346501 RIMS1Q86UR5 1692 aaKnown RBP24.49■■□□□ 1.51
TSPAN4-201ENST00000346501 RTEL1-TNFRSF6BF6WH68 1400 aa24.48■■□□□ 1.51
TSPAN4-201ENST00000346501 AGLP35573 1532 aa24.48■■□□□ 1.51
TSPAN4-201ENST00000346501 PLPPR3Q6T4P5 718 aa24.47■■□□□ 1.51
TSPAN4-201ENST00000346501 SIGLEC1Q9BZZ2 1709 aa24.47■■□□□ 1.51
TSPAN4-201ENST00000346501 INO80Q9ULG1 1556 aaPredicted RBP24.46■■□□□ 1.51
TSPAN4-201ENST00000346501 FER1L4A9Z1Z3 1794 aa24.45■■□□□ 1.5
TSPAN4-201ENST00000346501 A2MP01023 1474 aa24.45■■□□□ 1.5
TSPAN4-201ENST00000346501 ARHGEF5Q12774 1597 aa24.42■■□□□ 1.5
TSPAN4-201ENST00000346501 ADGBQ8N7X0 1667 aa24.4■■□□□ 1.5
TSPAN4-201ENST00000346501 CNTLNQ9NXG0 1405 aa24.37■■□□□ 1.49
TSPAN4-201ENST00000346501 GGT6Q6P531 493 aa24.36■■□□□ 1.49
TSPAN4-201ENST00000346501 DHX29Q7Z478 1369 aaKnown RBP24.35■■□□□ 1.49
TSPAN4-201ENST00000346501 FGD6Q6ZV73 1430 aa24.35■■□□□ 1.49
TSPAN4-201ENST00000346501 PPP6R1Q9UPN7 881 aa24.34■■□□□ 1.49
TSPAN4-201ENST00000346501 PLXNC1O60486 1568 aa24.33■■□□□ 1.48
TSPAN4-201ENST00000346501 PTPN23Q9H3S7 1636 aa24.32■■□□□ 1.48
TSPAN4-201ENST00000346501 KIF3BO15066 747 aa24.3■■□□□ 1.48
TSPAN4-201ENST00000346501 CEBPAP49715 358 aaPredicted RBP24.3■■□□□ 1.48
TSPAN4-201ENST00000346501 MAST1Q9Y2H9 1570 aa24.28■■□□□ 1.48
TSPAN4-201ENST00000346501 FAM50AQ14320 339 aaKnown RBP24.27■■□□□ 1.48
TSPAN4-201ENST00000346501 TCOF1Q13428 1488 aaKnown RBP24.26■■□□□ 1.47
TSPAN4-201ENST00000346501 SHANK2Q9UPX8 1470 aa24.23■■□□□ 1.47
TSPAN4-201ENST00000346501 DAPK1P53355 1430 aa24.22■■□□□ 1.47
TSPAN4-201ENST00000346501 ZMYM3Q14202 1370 aa24.22■■□□□ 1.47
TSPAN4-201ENST00000346501 LMTK3Q96Q04 1460 aa24.21■■□□□ 1.47
TSPAN4-201ENST00000346501 ABCC5O15440 1437 aa24.21■■□□□ 1.47
TSPAN4-201ENST00000346501 SETD1BQ9UPS6 1966 aaKnown RBP24.21■■□□□ 1.47
TSPAN4-201ENST00000346501 UHRF1BP1Q6BDS2 1440 aa24.2■■□□□ 1.46
TSPAN4-201ENST00000346501 MROH2AA6NES4 1674 aa24.2■■□□□ 1.46
TSPAN4-201ENST00000346501 ANKRD30AQ9BXX3 1397 aa24.19■■□□□ 1.46
TSPAN4-201ENST00000346501 WASHC2CQ9Y4E1 1318 aa24.19■■□□□ 1.46
TSPAN4-201ENST00000346501 C3P01024 1663 aa24.19■■□□□ 1.46
TSPAN4-201ENST00000346501 DNMT1P26358 1616 aaKnown RBP24.19■■□□□ 1.46
TSPAN4-201ENST00000346501 KIF15Q9NS87 1388 aa24.17■■□□□ 1.46
TSPAN4-201ENST00000346501 DUOX2Q9NRD8 1548 aa24.17■■□□□ 1.46
TSPAN4-201ENST00000346501 RRP7BPQ9NSQ0 103 aa24.17■■□□□ 1.46
TSPAN4-201ENST00000346501 CHIC2Q9UKJ5 165 aa24.17■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms