RNA–Protein interactions for RNA: ENST00000324340.13

DDX39A-202, Transcript of DExD-box helicase 39A, humanhuman

TSL 1 (best)

Gene DDX39A, Length 1,355 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-202ENST00000324340 ABCA9Q8IUA7 1624 aa19.24■□□□□ 0.67
DDX39A-202ENST00000324340 CFDP1Q9UEE9 299 aaPredicted RBP19.22■□□□□ 0.67
DDX39A-202ENST00000324340 ARAP3Q8WWN8 1544 aa19.22■□□□□ 0.67
DDX39A-202ENST00000324340 CAMSAP2Q08AD1 1489 aa19.2■□□□□ 0.66
DDX39A-202ENST00000324340 KCNH8Q96L42 1107 aa19.2■□□□□ 0.66
DDX39A-202ENST00000324340 PLCH2O75038 1416 aa19.2■□□□□ 0.66
DDX39A-202ENST00000324340 DNMT1P26358 1616 aaKnown RBP19.19■□□□□ 0.66
DDX39A-202ENST00000324340 SAMD9LQ8IVG5 1584 aa19.16■□□□□ 0.66
DDX39A-202ENST00000324340 ZNF644Q9H582 1327 aaPredicted RBP19.16■□□□□ 0.66
DDX39A-202ENST00000324340 PTPRKQ15262 1439 aa19.16■□□□□ 0.66
DDX39A-202ENST00000324340 ARHGAP5Q13017 1502 aa19.16■□□□□ 0.66
DDX39A-202ENST00000324340 DAPK1P53355 1430 aa19.14■□□□□ 0.65
DDX39A-202ENST00000324340 ITGAEP38570 1179 aa19.13■□□□□ 0.65
DDX39A-202ENST00000324340 GLI2P10070 1586 aa19.13■□□□□ 0.65
DDX39A-202ENST00000324340 ARHGEF5Q12774 1597 aa19.13■□□□□ 0.65
DDX39A-202ENST00000324340 ABCC5O15440 1437 aa19.12■□□□□ 0.65
DDX39A-202ENST00000324340 CROCC2H7BZ55 1655 aa19.12■□□□□ 0.65
DDX39A-202ENST00000324340 PLEKHH2Q8IVE3 1493 aa19.11■□□□□ 0.65
DDX39A-202ENST00000324340 MBD5Q9P267 1494 aa19.1■□□□□ 0.65
DDX39A-202ENST00000324340 AKNAQ7Z591 1439 aa19.1■□□□□ 0.65
DDX39A-202ENST00000324340 KIAA1107Q9UPP5 1409 aa19.1■□□□□ 0.65
DDX39A-202ENST00000324340 ZNF777Q9ULD5 760 aaPredicted RBP19.09■□□□□ 0.65
DDX39A-202ENST00000324340 SHANK2Q9UPX8 1470 aa19.08■□□□□ 0.64
DDX39A-202ENST00000324340 MAP3K4Q9Y6R4 1608 aa19.08■□□□□ 0.64
DDX39A-202ENST00000324340 HFM1A2PYH4 1435 aa19.07■□□□□ 0.64
DDX39A-202ENST00000324340 EFCAB2Q5VUJ9 269 aa19.07■□□□□ 0.64
DDX39A-202ENST00000324340 ABCC1P33527 1531 aa19.07■□□□□ 0.64
DDX39A-202ENST00000324340 DIP2BQ9P265 1576 aa19.07■□□□□ 0.64
DDX39A-202ENST00000324340 ROCK1Q13464 1354 aa19.06■□□□□ 0.64
DDX39A-202ENST00000324340 SETD5Q9C0A6 1442 aa19.06■□□□□ 0.64
DDX39A-202ENST00000324340 SYCP2Q9BX26 1530 aa19.06■□□□□ 0.64
DDX39A-202ENST00000324340 ZEB1P37275 1124 aaPredicted RBP19.06■□□□□ 0.64
DDX39A-202ENST00000324340 RSPH4AQ5TD94 716 aa19.06■□□□□ 0.64
DDX39A-202ENST00000324340 FANCAO15360 1455 aa19.05■□□□□ 0.64
DDX39A-202ENST00000324340 CD109Q6YHK3 1445 aa19.05■□□□□ 0.64
DDX39A-202ENST00000324340 ADGRL2O95490 1459 aa19.04■□□□□ 0.64
DDX39A-202ENST00000324340 CCDC141Q6ZP82 1450 aa19.04■□□□□ 0.64
DDX39A-202ENST00000324340 CFAP74Q9C0B2 1584 aa19.04■□□□□ 0.64
DDX39A-202ENST00000324340 GCC2Q8IWJ2 1684 aa19.04■□□□□ 0.64
DDX39A-202ENST00000324340 ADGBQ8N7X0 1667 aa19.04■□□□□ 0.64
DDX39A-202ENST00000324340 ARHGEF12Q9NZN5 1544 aa19.02■□□□□ 0.64
DDX39A-202ENST00000324340 NAIPQ13075 1403 aa19.02■□□□□ 0.64
DDX39A-202ENST00000324340 MAST1Q9Y2H9 1570 aa19.02■□□□□ 0.64
DDX39A-202ENST00000324340 RAB3GAP2Q9H2M9 1393 aa19.01■□□□□ 0.63
DDX39A-202ENST00000324340 HNRNPMP52272 730 aaKnown RBP eCLIP19■□□□□ 0.635e-8■■■■□ 23.8
DDX39A-202ENST00000324340 NCOA1Q15788 1441 aa18.98■□□□□ 0.63
DDX39A-202ENST00000324340 C9orf84Q5VXU9 1444 aa18.98■□□□□ 0.63
DDX39A-202ENST00000324340 NEO1Q92859 1461 aa18.98■□□□□ 0.63
DDX39A-202ENST00000324340 CHIC2Q9UKJ5 165 aa18.97■□□□□ 0.63
DDX39A-202ENST00000324340 KIF13AQ9H1H9 1805 aa18.97■□□□□ 0.63
DDX39A-202ENST00000324340 ADGRL1O94910 1474 aa18.96■□□□□ 0.63
DDX39A-202ENST00000324340 TSPY4P0CV99 314 aa18.95■□□□□ 0.62
DDX39A-202ENST00000324340 TSPY10P0CW01 314 aa18.95■□□□□ 0.62
DDX39A-202ENST00000324340 ANKRD30AQ9BXX3 1397 aa18.95■□□□□ 0.62
DDX39A-202ENST00000324340 TRAPPC8Q9Y2L5 1435 aa18.94■□□□□ 0.62
DDX39A-202ENST00000324340 FAM69CQ0P6D2 419 aa18.93■□□□□ 0.62
DDX39A-202ENST00000324340 RRP7BPQ9NSQ0 103 aa18.93■□□□□ 0.62
DDX39A-202ENST00000324340 PLXNC1O60486 1568 aa18.93■□□□□ 0.62
DDX39A-202ENST00000324340 PPRC1Q5VV67 1664 aaKnown RBP18.93■□□□□ 0.62
DDX39A-202ENST00000324340 SCAPERQ9BY12 1400 aa18.92■□□□□ 0.62
DDX39A-202ENST00000324340 KDM6BO15054 1643 aa18.9■□□□□ 0.62
DDX39A-202ENST00000324340 RTEL1-TNFRSF6BF6WH68 1400 aa18.9■□□□□ 0.62
DDX39A-202ENST00000324340 DHX57Q6P158 1386 aaKnown RBP18.89■□□□□ 0.61
DDX39A-202ENST00000324340 ACIN1Q9UKV3 1341 aaKnown RBP18.89■□□□□ 0.61
DDX39A-202ENST00000324340 INO80Q9ULG1 1556 aaPredicted RBP18.89■□□□□ 0.61
DDX39A-202ENST00000324340 TEX14Q8IWB6 1497 aa18.88■□□□□ 0.61
DDX39A-202ENST00000324340 KDM5CP41229 1560 aa18.88■□□□□ 0.61
DDX39A-202ENST00000324340 ZFYVE16Q7Z3T8 1539 aa18.88■□□□□ 0.61
DDX39A-202ENST00000324340 ZNF518AQ6AHZ1 1483 aa18.88■□□□□ 0.61
DDX39A-202ENST00000324340 CCER1Q8TC90 406 aaPredicted RBP18.87■□□□□ 0.61
DDX39A-202ENST00000324340 POGZQ7Z3K3 1410 aa18.87■□□□□ 0.61
DDX39A-202ENST00000324340 KIF15Q9NS87 1388 aa18.86■□□□□ 0.61
DDX39A-202ENST00000324340 TRHP20396 242 aaPredicted RBP18.85■□□□□ 0.61
DDX39A-202ENST00000324340 AFAP1Q8N556 730 aa18.85■□□□□ 0.61
DDX39A-202ENST00000324340 ANKRD50Q9ULJ7 1429 aa18.84■□□□□ 0.61
DDX39A-202ENST00000324340 ATP7AQ04656 1500 aa18.84■□□□□ 0.61
DDX39A-202ENST00000324340 TSPOAP1O95153 1857 aa18.83■□□□□ 0.61
DDX39A-202ENST00000324340 DENND4BO75064 1496 aaPredicted RBP18.83■□□□□ 0.6
DDX39A-202ENST00000324340 RICTORQ6R327 1708 aa18.83■□□□□ 0.6
DDX39A-202ENST00000324340 SPAG9O60271 1321 aaKnown RBP18.83■□□□□ 0.6
DDX39A-202ENST00000324340 CLSPNQ9HAW4 1339 aa18.83■□□□□ 0.6
DDX39A-202ENST00000324340 DUOX2Q9NRD8 1548 aa18.82■□□□□ 0.6
DDX39A-202ENST00000324340 MLH3Q9UHC1 1453 aa18.81■□□□□ 0.6
DDX39A-202ENST00000324340 KIDINS220Q9ULH0 1771 aa18.81■□□□□ 0.6
DDX39A-202ENST00000324340 HECW2Q9P2P5 1572 aa18.79■□□□□ 0.6
DDX39A-202ENST00000324340 ERBINQ96RT1 1412 aa18.78■□□□□ 0.6
DDX39A-202ENST00000324340 FRMPD1Q5SYB0 1578 aa18.78■□□□□ 0.6
DDX39A-202ENST00000324340 ZMYM4Q5VZL5 1548 aa18.76■□□□□ 0.59
DDX39A-202ENST00000324340 KDM5DQ9BY66 1539 aa18.75■□□□□ 0.59
DDX39A-202ENST00000324340 UNC13BO14795 1591 aa18.74■□□□□ 0.59
DDX39A-202ENST00000324340 EIF2AK4Q9P2K8 1649 aaKnown RBP18.73■□□□□ 0.59
DDX39A-202ENST00000324340 RAPGEF3O95398 923 aa18.72■□□□□ 0.59
DDX39A-202ENST00000324340 MAGI2Q86UL8 1455 aa18.72■□□□□ 0.59
DDX39A-202ENST00000324340 ABCA6Q8N139 1617 aa18.71■□□□□ 0.59
DDX39A-202ENST00000324340 PZPP20742 1482 aa18.71■□□□□ 0.59
DDX39A-202ENST00000324340 DHX29Q7Z478 1369 aaKnown RBP18.7■□□□□ 0.58
DDX39A-202ENST00000324340 TRIM52Q96A61 297 aa18.69■□□□□ 0.58
DDX39A-202ENST00000324340 DIP2CQ9Y2E4 1556 aa18.68■□□□□ 0.58
DDX39A-202ENST00000324340 DEPDC5O75140 1603 aa18.68■□□□□ 0.58
DDX39A-202ENST00000324340 BCORL1Q5H9F3 1711 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms