RNA–Protein interactions for RNA: ENST00000323144.11

TPM3-204, Transcript of tropomyosin 3, humanhuman

TSL 2 BASIC

Gene TPM3, Length 1,088 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-204ENST00000323144 YEATS2Q9ULM3 1422 aa20.4■□□□□ 0.86
TPM3-204ENST00000323144 PTPRMP28827 1452 aa20.39■□□□□ 0.85
TPM3-204ENST00000323144 PLCH2O75038 1416 aa20.39■□□□□ 0.85
TPM3-204ENST00000323144 FER1L4A9Z1Z3 1794 aa20.39■□□□□ 0.85
TPM3-204ENST00000323144 CDC42BPAQ5VT25 1732 aa20.39■□□□□ 0.85
TPM3-204ENST00000323144 ARHGAP5Q13017 1502 aa20.37■□□□□ 0.85
TPM3-204ENST00000323144 CCDC18Q5T9S5 1454 aa20.37■□□□□ 0.85
TPM3-204ENST00000323144 FYCO1Q9BQS8 1478 aa20.37■□□□□ 0.85
TPM3-204ENST00000323144 ATP1B4Q9UN42 357 aaPredicted RBP20.37■□□□□ 0.85
TPM3-204ENST00000323144 ITSN2Q9NZM3 1697 aa20.37■□□□□ 0.85
TPM3-204ENST00000323144 CASKIN1Q8WXD9 1431 aa20.36■□□□□ 0.85
TPM3-204ENST00000323144 KDM5CP41229 1560 aa20.36■□□□□ 0.85
TPM3-204ENST00000323144 CLIP1P30622 1438 aa20.35■□□□□ 0.85
TPM3-204ENST00000323144 ABCC1P33527 1531 aa20.34■□□□□ 0.85
TPM3-204ENST00000323144 ABCA6Q8N139 1617 aa20.33■□□□□ 0.84
TPM3-204ENST00000323144 SCAPERQ9BY12 1400 aa20.33■□□□□ 0.84
TPM3-204ENST00000323144 MAGI2Q86UL8 1455 aa20.3■□□□□ 0.84
TPM3-204ENST00000323144 DIP2CQ9Y2E4 1556 aa20.3■□□□□ 0.84
TPM3-204ENST00000323144 ZNF518AQ6AHZ1 1483 aa20.27■□□□□ 0.84
TPM3-204ENST00000323144 ARID4BQ4LE39 1312 aaPredicted RBP20.26■□□□□ 0.83
TPM3-204ENST00000323144 SAMD9LQ8IVG5 1584 aa20.25■□□□□ 0.83
TPM3-204ENST00000323144 ARHGEF12Q9NZN5 1544 aa20.25■□□□□ 0.83
TPM3-204ENST00000323144 C9orf84Q5VXU9 1444 aa20.25■□□□□ 0.83
TPM3-204ENST00000323144 LMTK3Q96Q04 1460 aa20.24■□□□□ 0.83
TPM3-204ENST00000323144 REREQ9P2R6 1566 aa20.22■□□□□ 0.83
TPM3-204ENST00000323144 CDK11AQ9UQ88 783 aaPredicted RBP20.22■□□□□ 0.83
TPM3-204ENST00000323144 KIDINS220Q9ULH0 1771 aa20.21■□□□□ 0.83
TPM3-204ENST00000323144 SYCP2Q9BX26 1530 aa20.2■□□□□ 0.82
TPM3-204ENST00000323144 ATP10AO60312 1499 aa20.19■□□□□ 0.82
TPM3-204ENST00000323144 EFCAB2Q5VUJ9 269 aa20.18■□□□□ 0.82
TPM3-204ENST00000323144 TRAPPC8Q9Y2L5 1435 aa20.17■□□□□ 0.82
TPM3-204ENST00000323144 TIAM1Q13009 1591 aa20.17■□□□□ 0.82
TPM3-204ENST00000323144 PREX1Q8TCU6 1659 aa20.16■□□□□ 0.82
TPM3-204ENST00000323144 EHBP1L1Q8N3D4 1523 aa20.16■□□□□ 0.82
TPM3-204ENST00000323144 CEP162Q5TB80 1403 aa20.15■□□□□ 0.82
TPM3-204ENST00000323144 INO80Q9ULG1 1556 aaPredicted RBP20.15■□□□□ 0.82
TPM3-204ENST00000323144 MLH3Q9UHC1 1453 aa20.13■□□□□ 0.81
TPM3-204ENST00000323144 C3P01024 1663 aa20.13■□□□□ 0.81
TPM3-204ENST00000323144 GPATCH8Q9UKJ3 1502 aaKnown RBP20.12■□□□□ 0.81
TPM3-204ENST00000323144 MLECQ14165 292 aa20.11■□□□□ 0.81
TPM3-204ENST00000323144 AFAP1Q8N556 730 aa20.1■□□□□ 0.81
TPM3-204ENST00000323144 AGLP35573 1532 aa20.08■□□□□ 0.81
TPM3-204ENST00000323144 PLPPR3Q6T4P5 718 aa20.08■□□□□ 0.81
TPM3-204ENST00000323144 SUPT6HQ7KZ85 1726 aaKnown RBP20.07■□□□□ 0.8
TPM3-204ENST00000323144 ATP7AQ04656 1500 aa20.07■□□□□ 0.8
TPM3-204ENST00000323144 PLXNC1O60486 1568 aa20.07■□□□□ 0.8
TPM3-204ENST00000323144 ILDR1Q86SU0 546 aaPredicted RBP20.06■□□□□ 0.8
TPM3-204ENST00000323144 ADGBQ8N7X0 1667 aa20.03■□□□□ 0.8
TPM3-204ENST00000323144 MTUS2Q5JR59 1369 aa20.03■□□□□ 0.8
TPM3-204ENST00000323144 MROH2AA6NES4 1674 aa20.03■□□□□ 0.8
TPM3-204ENST00000323144 CLTCQ00610 1675 aaKnown RBP20■□□□□ 0.79
TPM3-204ENST00000323144 CCNB3Q8WWL7 1395 aa19.99■□□□□ 0.79
TPM3-204ENST00000323144 HSPA2P54652 639 aa19.99■□□□□ 0.79
TPM3-204ENST00000323144 MYT1LQ9UL68 1186 aa19.99■□□□□ 0.79
TPM3-204ENST00000323144 PLEKHH2Q8IVE3 1493 aa19.99■□□□□ 0.79
TPM3-204ENST00000323144 STRCQ7RTU9 1775 aa19.98■□□□□ 0.79
TPM3-204ENST00000323144 ZNF777Q9ULD5 760 aaPredicted RBP19.97■□□□□ 0.79
TPM3-204ENST00000323144 KIAA1107Q9UPP5 1409 aa19.95■□□□□ 0.78
TPM3-204ENST00000323144 NCOA2Q15596 1464 aa19.95■□□□□ 0.78
TPM3-204ENST00000323144 CAMSAP2Q08AD1 1489 aa19.93■□□□□ 0.78
TPM3-204ENST00000323144 CEBPAP49715 358 aaPredicted RBP19.93■□□□□ 0.78
TPM3-204ENST00000323144 MYO3AQ8NEV4 1616 aa19.93■□□□□ 0.78
TPM3-204ENST00000323144 VPS8Q8N3P4 1428 aa19.92■□□□□ 0.78
TPM3-204ENST00000323144 A2MP01023 1474 aa19.92■□□□□ 0.78
TPM3-204ENST00000323144 MBD5Q9P267 1494 aa19.92■□□□□ 0.78
TPM3-204ENST00000323144 HNRNPMP52272 730 aaKnown RBP eCLIP19.91■□□□□ 0.787e-7■■■□□ 16.5
TPM3-204ENST00000323144 UHRF1BP1Q6BDS2 1440 aa19.91■□□□□ 0.78
TPM3-204ENST00000323144 ZNF142P52746 1687 aaPredicted RBP19.91■□□□□ 0.78
TPM3-204ENST00000323144 CFDP1Q9UEE9 299 aaPredicted RBP19.9■□□□□ 0.78
TPM3-204ENST00000323144 SPAG9O60271 1321 aaKnown RBP19.9■□□□□ 0.78
TPM3-204ENST00000323144 ZNF644Q9H582 1327 aaPredicted RBP19.88■□□□□ 0.77
TPM3-204ENST00000323144 CNTLNQ9NXG0 1405 aa19.87■□□□□ 0.77
TPM3-204ENST00000323144 CCDC141Q6ZP82 1450 aa19.86■□□□□ 0.77
TPM3-204ENST00000323144 ARHGEF5Q12774 1597 aa19.86■□□□□ 0.77
TPM3-204ENST00000323144 LRRC9Q6ZRR7 1453 aa19.86■□□□□ 0.77
TPM3-204ENST00000323144 SETD1BQ9UPS6 1966 aaKnown RBP19.84■□□□□ 0.77
TPM3-204ENST00000323144 CROCC2H7BZ55 1655 aa19.81■□□□□ 0.76
TPM3-204ENST00000323144 LOC105371045A0A1W2PR82 267 aa19.81■□□□□ 0.76
TPM3-204ENST00000323144 CEP170BQ9Y4F5 1589 aaPredicted RBP19.8■□□□□ 0.76
TPM3-204ENST00000323144 MAST1Q9Y2H9 1570 aa19.78■□□□□ 0.76
TPM3-204ENST00000323144 RTEL1-TNFRSF6BF6WH68 1400 aa19.78■□□□□ 0.76
TPM3-204ENST00000323144 NPATQ14207 1427 aa19.78■□□□□ 0.76
TPM3-204ENST00000323144 MAP3K1Q13233 1512 aa19.78■□□□□ 0.76
TPM3-204ENST00000323144 CAMSAP1Q5T5Y3 1602 aa19.78■□□□□ 0.76
TPM3-204ENST00000323144 KDM5DQ9BY66 1539 aa19.76■□□□□ 0.75
TPM3-204ENST00000323144 RNF17Q9BXT8 1623 aaKnown RBP19.76■□□□□ 0.75
TPM3-204ENST00000323144 FBXO41Q8TF61 875 aa19.76■□□□□ 0.75
TPM3-204ENST00000323144 NCOA1Q15788 1441 aa19.76■□□□□ 0.75
TPM3-204ENST00000323144 ESF1Q9H501 851 aaKnown RBP19.75■□□□□ 0.75
TPM3-204ENST00000323144 PTPRKQ15262 1439 aa19.74■□□□□ 0.75
TPM3-204ENST00000323144 MROH1Q8NDA8 1641 aa19.73■□□□□ 0.75
TPM3-204ENST00000323144 EIF2AK4Q9P2K8 1649 aaKnown RBP19.73■□□□□ 0.75
TPM3-204ENST00000323144 ZMYM3Q14202 1370 aa19.72■□□□□ 0.75
TPM3-204ENST00000323144 FAM135AQ9P2D6 1515 aa19.72■□□□□ 0.75
TPM3-204ENST00000323144 POLR1AO95602 1720 aaPredicted RBP19.72■□□□□ 0.75
TPM3-204ENST00000323144 ZC3H13Q5T200 1668 aaKnown RBP19.71■□□□□ 0.75
TPM3-204ENST00000323144 CEP152O94986 1710 aa19.71■□□□□ 0.75
TPM3-204ENST00000323144 MYOM3Q5VTT5 1437 aa19.7■□□□□ 0.74
TPM3-204ENST00000323144 DHX29Q7Z478 1369 aaKnown RBP19.69■□□□□ 0.74
TPM3-204ENST00000323144 PTPN23Q9H3S7 1636 aa19.69■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms