RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 ADAMTSL3P82987 1691 aa31.64■■■□□ 2.66
LIME1-201ENST00000309546 ZFYVE16Q7Z3T8 1539 aa31.64■■■□□ 2.66
LIME1-201ENST00000309546 BCORL1Q5H9F3 1711 aa31.63■■■□□ 2.65
LIME1-201ENST00000309546 EFCAB2Q5VUJ9 269 aa31.62■■■□□ 2.65
LIME1-201ENST00000309546 POGZQ7Z3K3 1410 aa31.62■■■□□ 2.65
LIME1-201ENST00000309546 HECW2Q9P2P5 1572 aa31.6■■■□□ 2.65
LIME1-201ENST00000309546 YEATS2Q9ULM3 1422 aa31.58■■■□□ 2.65
LIME1-201ENST00000309546 MADDQ8WXG6 1647 aa31.57■■■□□ 2.64
LIME1-201ENST00000309546 CDC42BPBQ9Y5S2 1711 aa31.57■■■□□ 2.64
LIME1-201ENST00000309546 MAGI2Q86UL8 1455 aa31.56■■■□□ 2.64
LIME1-201ENST00000309546 PREX2Q70Z35 1606 aa31.55■■■□□ 2.64
LIME1-201ENST00000309546 PTPRMP28827 1452 aa31.53■■■□□ 2.64
LIME1-201ENST00000309546 SIGLEC1Q9BZZ2 1709 aa31.52■■■□□ 2.64
LIME1-201ENST00000309546 RIMS1Q86UR5 1692 aaKnown RBP31.49■■■□□ 2.63
LIME1-201ENST00000309546 ZNF518AQ6AHZ1 1483 aa31.48■■■□□ 2.63
LIME1-201ENST00000309546 CDC42BPAQ5VT25 1732 aa31.48■■■□□ 2.63
LIME1-201ENST00000309546 CEP162Q5TB80 1403 aa31.45■■■□□ 2.63
LIME1-201ENST00000309546 KDM5CP41229 1560 aa31.43■■■□□ 2.62
LIME1-201ENST00000309546 ABCC1P33527 1531 aa31.42■■■□□ 2.62
LIME1-201ENST00000309546 ITSN2Q9NZM3 1697 aa31.41■■■□□ 2.62
LIME1-201ENST00000309546 AFAP1Q8N556 730 aa31.41■■■□□ 2.62
LIME1-201ENST00000309546 C9orf84Q5VXU9 1444 aa31.41■■■□□ 2.62
LIME1-201ENST00000309546 ATP10AO60312 1499 aa31.4■■■□□ 2.62
LIME1-201ENST00000309546 MYT1LQ9UL68 1186 aa31.4■■■□□ 2.62
LIME1-201ENST00000309546 MLECQ14165 292 aa31.39■■■□□ 2.62
LIME1-201ENST00000309546 FER1L4A9Z1Z3 1794 aa31.37■■■□□ 2.61
LIME1-201ENST00000309546 ARHGEF12Q9NZN5 1544 aa31.35■■■□□ 2.61
LIME1-201ENST00000309546 MTUS2Q5JR59 1369 aa31.34■■■□□ 2.61
LIME1-201ENST00000309546 TRAPPC8Q9Y2L5 1435 aa31.33■■■□□ 2.61
LIME1-201ENST00000309546 PLPPR3Q6T4P5 718 aa31.33■■■□□ 2.61
LIME1-201ENST00000309546 DIP2CQ9Y2E4 1556 aa31.33■■■□□ 2.61
LIME1-201ENST00000309546 ZNF777Q9ULD5 760 aaPredicted RBP31.32■■■□□ 2.6
LIME1-201ENST00000309546 ABCA6Q8N139 1617 aa31.31■■■□□ 2.6
LIME1-201ENST00000309546 SAMD9LQ8IVG5 1584 aa31.31■■■□□ 2.6
LIME1-201ENST00000309546 GPATCH8Q9UKJ3 1502 aaKnown RBP31.31■■■□□ 2.6
LIME1-201ENST00000309546 MLH3Q9UHC1 1453 aa31.28■■■□□ 2.6
LIME1-201ENST00000309546 EHBP1L1Q8N3D4 1523 aa31.27■■■□□ 2.6
LIME1-201ENST00000309546 SYCP2Q9BX26 1530 aa31.27■■■□□ 2.6
LIME1-201ENST00000309546 CCNB3Q8WWL7 1395 aa31.27■■■□□ 2.6
LIME1-201ENST00000309546 LOC105371045A0A1W2PR82 267 aa31.25■■■□□ 2.59
LIME1-201ENST00000309546 KIDINS220Q9ULH0 1771 aa31.22■■■□□ 2.59
LIME1-201ENST00000309546 REREQ9P2R6 1566 aa31.22■■■□□ 2.59
LIME1-201ENST00000309546 CFDP1Q9UEE9 299 aaPredicted RBP31.21■■■□□ 2.59
LIME1-201ENST00000309546 TIAM1Q13009 1591 aa31.2■■■□□ 2.58
LIME1-201ENST00000309546 LMTK3Q96Q04 1460 aa31.19■■■□□ 2.58
LIME1-201ENST00000309546 HNRNPMP52272 730 aaKnown RBP eCLIP31.16■■■□□ 2.58
LIME1-201ENST00000309546 PLEKHH2Q8IVE3 1493 aa31.15■■■□□ 2.58
LIME1-201ENST00000309546 KIAA1107Q9UPP5 1409 aa31.12■■■□□ 2.57
LIME1-201ENST00000309546 SPAG9O60271 1321 aaKnown RBP31.11■■■□□ 2.57
LIME1-201ENST00000309546 AGLP35573 1532 aa31.11■■■□□ 2.57
LIME1-201ENST00000309546 SUPT6HQ7KZ85 1726 aaKnown RBP31.11■■■□□ 2.57
LIME1-201ENST00000309546 VPS8Q8N3P4 1428 aa31.1■■■□□ 2.57
LIME1-201ENST00000309546 ATP7AQ04656 1500 aa31.09■■■□□ 2.57
LIME1-201ENST00000309546 INO80Q9ULG1 1556 aaPredicted RBP31.07■■■□□ 2.56
LIME1-201ENST00000309546 CEBPAP49715 358 aaPredicted RBP31.06■■■□□ 2.56
LIME1-201ENST00000309546 NCOA2Q15596 1464 aa31.05■■■□□ 2.56
LIME1-201ENST00000309546 ZNF644Q9H582 1327 aaPredicted RBP31.04■■■□□ 2.56
LIME1-201ENST00000309546 HSPA2P54652 639 aa31.04■■■□□ 2.56
LIME1-201ENST00000309546 PREX1Q8TCU6 1659 aa31.03■■■□□ 2.56
LIME1-201ENST00000309546 ESF1Q9H501 851 aaKnown RBP31.01■■■□□ 2.55
LIME1-201ENST00000309546 C3P01024 1663 aa31■■■□□ 2.55
LIME1-201ENST00000309546 ILDR1Q86SU0 546 aaPredicted RBP30.98■■■□□ 2.55
LIME1-201ENST00000309546 A2MP01023 1474 aa30.95■■■□□ 2.55
LIME1-201ENST00000309546 MBD5Q9P267 1494 aa30.95■■■□□ 2.55
LIME1-201ENST00000309546 PLXNC1O60486 1568 aa30.95■■■□□ 2.54
LIME1-201ENST00000309546 CAMSAP2Q08AD1 1489 aa30.95■■■□□ 2.54
LIME1-201ENST00000309546 LRRC9Q6ZRR7 1453 aa30.95■■■□□ 2.54
LIME1-201ENST00000309546 ADGBQ8N7X0 1667 aa30.94■■■□□ 2.54
LIME1-201ENST00000309546 CNTLNQ9NXG0 1405 aa30.9■■■□□ 2.54
LIME1-201ENST00000309546 UHRF1BP1Q6BDS2 1440 aa30.89■■■□□ 2.53
LIME1-201ENST00000309546 SETD1BQ9UPS6 1966 aaKnown RBP30.88■■■□□ 2.53
LIME1-201ENST00000309546 CCDC141Q6ZP82 1450 aa30.88■■■□□ 2.53
LIME1-201ENST00000309546 MAP3K1Q13233 1512 aa30.87■■■□□ 2.53
LIME1-201ENST00000309546 MROH2AA6NES4 1674 aa30.87■■■□□ 2.53
LIME1-201ENST00000309546 CLTCQ00610 1675 aaKnown RBP30.86■■■□□ 2.53
LIME1-201ENST00000309546 RTEL1-TNFRSF6BF6WH68 1400 aa30.84■■■□□ 2.53
LIME1-201ENST00000309546 KANK4Q5T7N3 995 aaPredicted RBP30.83■■■□□ 2.53
LIME1-201ENST00000309546 GGT6Q6P531 493 aa30.81■■■□□ 2.52
LIME1-201ENST00000309546 ARHGEF5Q12774 1597 aa30.79■■■□□ 2.52
LIME1-201ENST00000309546 RSPH4AQ5TD94 716 aa30.76■■■□□ 2.51
LIME1-201ENST00000309546 ZMYM3Q14202 1370 aa30.76■■■□□ 2.51
LIME1-201ENST00000309546 DHX29Q7Z478 1369 aaKnown RBP30.74■■■□□ 2.51
LIME1-201ENST00000309546 APLP2Q06481 763 aa30.73■■■□□ 2.51
LIME1-201ENST00000309546 STRCQ7RTU9 1775 aa30.73■■■□□ 2.51
LIME1-201ENST00000309546 MYOM3Q5VTT5 1437 aa30.73■■■□□ 2.51
LIME1-201ENST00000309546 NPATQ14207 1427 aa30.71■■■□□ 2.51
LIME1-201ENST00000309546 TSPY4P0CV99 314 aa30.69■■■□□ 2.5
LIME1-201ENST00000309546 TSPY10P0CW01 314 aa30.69■■■□□ 2.5
LIME1-201ENST00000309546 MIA2Q96PC5 1412 aa30.67■■■□□ 2.5
LIME1-201ENST00000309546 KIF3BO15066 747 aa30.66■■■□□ 2.5
LIME1-201ENST00000309546 FBXO41Q8TF61 875 aa30.65■■■□□ 2.5
LIME1-201ENST00000309546 MYO3AQ8NEV4 1616 aa30.65■■■□□ 2.5
LIME1-201ENST00000309546 MAST1Q9Y2H9 1570 aa30.64■■■□□ 2.5
LIME1-201ENST00000309546 PPP6R1Q9UPN7 881 aa30.64■■■□□ 2.5
LIME1-201ENST00000309546 PTPRKQ15262 1439 aa30.63■■■□□ 2.49
LIME1-201ENST00000309546 DMRT2Q9Y5R5 561 aa30.6■■■□□ 2.49
LIME1-201ENST00000309546 ZNF142P52746 1687 aaPredicted RBP30.59■■■□□ 2.49
LIME1-201ENST00000309546 KDM5DQ9BY66 1539 aa30.59■■■□□ 2.49
LIME1-201ENST00000309546 CAMSAP1Q5T5Y3 1602 aa30.58■■■□□ 2.49
LIME1-201ENST00000309546 PTPN23Q9H3S7 1636 aa30.58■■■□□ 2.49
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms