RNA–Protein interactions for RNA: ENST00000306853.1

CSPG4P2Y-201, Transcript of CSPG4 pseudogene 2 Y-linked, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P2Y, Length 795 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P2Y-201ENST00000306853 LRRC9Q6ZRR7 1453 aa17.28■□□□□ 0.36
CSPG4P2Y-201ENST00000306853 AKNAQ7Z591 1439 aa17.26■□□□□ 0.35
CSPG4P2Y-201ENST00000306853 CCNB3Q8WWL7 1395 aa17.25■□□□□ 0.35
CSPG4P2Y-201ENST00000306853 ADGRL1O94910 1474 aa17.24■□□□□ 0.35
CSPG4P2Y-201ENST00000306853 RICTORQ6R327 1708 aa17.24■□□□□ 0.35
CSPG4P2Y-201ENST00000306853 EFCAB2Q5VUJ9 269 aa17.23■□□□□ 0.35
CSPG4P2Y-201ENST00000306853 NCOA2Q15596 1464 aa17.23■□□□□ 0.35
CSPG4P2Y-201ENST00000306853 COL17A1Q9UMD9 1497 aaPredicted RBP17.23■□□□□ 0.35
CSPG4P2Y-201ENST00000306853 FRMPD1Q5SYB0 1578 aa17.21■□□□□ 0.35
CSPG4P2Y-201ENST00000306853 DENND4BO75064 1496 aaPredicted RBP17.21■□□□□ 0.35
CSPG4P2Y-201ENST00000306853 GPATCH8Q9UKJ3 1502 aaKnown RBP17.21■□□□□ 0.34
CSPG4P2Y-201ENST00000306853 ABCC1P33527 1531 aa17.2■□□□□ 0.34
CSPG4P2Y-201ENST00000306853 SAMD9LQ8IVG5 1584 aa17.19■□□□□ 0.34
CSPG4P2Y-201ENST00000306853 SCAPERQ9BY12 1400 aa17.17■□□□□ 0.34
CSPG4P2Y-201ENST00000306853 POGZQ7Z3K3 1410 aa17.16■□□□□ 0.34
CSPG4P2Y-201ENST00000306853 KANK4Q5T7N3 995 aaPredicted RBP17.16■□□□□ 0.34
CSPG4P2Y-201ENST00000306853 CFDP1Q9UEE9 299 aaPredicted RBP17.16■□□□□ 0.34
CSPG4P2Y-201ENST00000306853 ZNF777Q9ULD5 760 aaPredicted RBP17.15■□□□□ 0.34
CSPG4P2Y-201ENST00000306853 PLEKHH2Q8IVE3 1493 aa17.15■□□□□ 0.34
CSPG4P2Y-201ENST00000306853 ZMYM4Q5VZL5 1548 aa17.15■□□□□ 0.34
CSPG4P2Y-201ENST00000306853 ZNF518AQ6AHZ1 1483 aa17.14■□□□□ 0.33
CSPG4P2Y-201ENST00000306853 RAPGEF3O95398 923 aa17.14■□□□□ 0.33
CSPG4P2Y-201ENST00000306853 SYCP2Q9BX26 1530 aa17.14■□□□□ 0.33
CSPG4P2Y-201ENST00000306853 ARHGEF40Q8TER5 1519 aa17.12■□□□□ 0.33
CSPG4P2Y-201ENST00000306853 HECW2Q9P2P5 1572 aa17.12■□□□□ 0.33
CSPG4P2Y-201ENST00000306853 KDM5CP41229 1560 aa17.11■□□□□ 0.33
CSPG4P2Y-201ENST00000306853 ZFYVE16Q7Z3T8 1539 aa17.11■□□□□ 0.33
CSPG4P2Y-201ENST00000306853 MYOM3Q5VTT5 1437 aa17.1■□□□□ 0.33
CSPG4P2Y-201ENST00000306853 CAMSAP2Q08AD1 1489 aa17.1■□□□□ 0.33
CSPG4P2Y-201ENST00000306853 MAGI2Q86UL8 1455 aa17.09■□□□□ 0.33
CSPG4P2Y-201ENST00000306853 ARHGEF12Q9NZN5 1544 aa17.08■□□□□ 0.32
CSPG4P2Y-201ENST00000306853 KIAA1107Q9UPP5 1409 aa17.07■□□□□ 0.32
CSPG4P2Y-201ENST00000306853 MIA2Q96PC5 1412 aa17.06■□□□□ 0.32
CSPG4P2Y-201ENST00000306853 MYT1LQ9UL68 1186 aa17.06■□□□□ 0.32
CSPG4P2Y-201ENST00000306853 PTPN23Q9H3S7 1636 aa17.06■□□□□ 0.32
CSPG4P2Y-201ENST00000306853 TRAPPC8Q9Y2L5 1435 aa17.05■□□□□ 0.32
CSPG4P2Y-201ENST00000306853 KIDINS220Q9ULH0 1771 aa17.03■□□□□ 0.32
CSPG4P2Y-201ENST00000306853 ARHGEF5Q12774 1597 aa17.02■□□□□ 0.32
CSPG4P2Y-201ENST00000306853 INO80Q9ULG1 1556 aaPredicted RBP17.02■□□□□ 0.32
CSPG4P2Y-201ENST00000306853 CCDC141Q6ZP82 1450 aa17.02■□□□□ 0.32
CSPG4P2Y-201ENST00000306853 HNRNPMP52272 730 aaKnown RBP eCLIP17.02■□□□□ 0.32
CSPG4P2Y-201ENST00000306853 AFAP1Q8N556 730 aa17.02■□□□□ 0.32
CSPG4P2Y-201ENST00000306853 ABCA6Q8N139 1617 aa17.02■□□□□ 0.31
CSPG4P2Y-201ENST00000306853 ZNF644Q9H582 1327 aaPredicted RBP17.01■□□□□ 0.31
CSPG4P2Y-201ENST00000306853 MLH3Q9UHC1 1453 aa17.01■□□□□ 0.31
CSPG4P2Y-201ENST00000306853 FGD6Q6ZV73 1430 aa17.01■□□□□ 0.31
CSPG4P2Y-201ENST00000306853 YEATS2Q9ULM3 1422 aa17.01■□□□□ 0.31
CSPG4P2Y-201ENST00000306853 DIP2CQ9Y2E4 1556 aa17.01■□□□□ 0.31
CSPG4P2Y-201ENST00000306853 ATP7AQ04656 1500 aa17.01■□□□□ 0.31
CSPG4P2Y-201ENST00000306853 CROCC2H7BZ55 1655 aa17■□□□□ 0.31
CSPG4P2Y-201ENST00000306853 MBD5Q9P267 1494 aa16.99■□□□□ 0.31
CSPG4P2Y-201ENST00000306853 SPAG9O60271 1321 aaKnown RBP16.98■□□□□ 0.31
CSPG4P2Y-201ENST00000306853 ADGBQ8N7X0 1667 aa16.98■□□□□ 0.31
CSPG4P2Y-201ENST00000306853 C9orf84Q5VXU9 1444 aa16.98■□□□□ 0.31
CSPG4P2Y-201ENST00000306853 RSPH4AQ5TD94 716 aa16.97■□□□□ 0.31
CSPG4P2Y-201ENST00000306853 ATP10AO60312 1499 aa16.97■□□□□ 0.31
CSPG4P2Y-201ENST00000306853 TCOF1Q13428 1488 aaKnown RBP16.97■□□□□ 0.31
CSPG4P2Y-201ENST00000306853 PPARGC1BQ86YN6 1023 aaKnown RBP16.96■□□□□ 0.31
CSPG4P2Y-201ENST00000306853 REREQ9P2R6 1566 aa16.96■□□□□ 0.31
CSPG4P2Y-201ENST00000306853 BCORL1Q5H9F3 1711 aa16.96■□□□□ 0.3
CSPG4P2Y-201ENST00000306853 DNMT1P26358 1616 aaKnown RBP16.96■□□□□ 0.3
CSPG4P2Y-201ENST00000306853 SIGLEC1Q9BZZ2 1709 aa16.95■□□□□ 0.3
CSPG4P2Y-201ENST00000306853 ARID4BQ4LE39 1312 aaPredicted RBP16.95■□□□□ 0.3
CSPG4P2Y-201ENST00000306853 MAST1Q9Y2H9 1570 aa16.94■□□□□ 0.3
CSPG4P2Y-201ENST00000306853 RTEL1-TNFRSF6BF6WH68 1400 aa16.93■□□□□ 0.3
CSPG4P2Y-201ENST00000306853 TSPY4P0CV99 314 aa16.92■□□□□ 0.3
CSPG4P2Y-201ENST00000306853 TSPY10P0CW01 314 aa16.92■□□□□ 0.3
CSPG4P2Y-201ENST00000306853 FER1L4A9Z1Z3 1794 aa16.91■□□□□ 0.3
CSPG4P2Y-201ENST00000306853 SHANK2Q9UPX8 1470 aa16.91■□□□□ 0.3
CSPG4P2Y-201ENST00000306853 PLXNC1O60486 1568 aa16.89■□□□□ 0.3
CSPG4P2Y-201ENST00000306853 DAPK1P53355 1430 aa16.89■□□□□ 0.29
CSPG4P2Y-201ENST00000306853 ADAMTSL3P82987 1691 aa16.89■□□□□ 0.29
CSPG4P2Y-201ENST00000306853 FAM50AQ14320 339 aaKnown RBP16.89■□□□□ 0.29
CSPG4P2Y-201ENST00000306853 A2MP01023 1474 aa16.88■□□□□ 0.29
CSPG4P2Y-201ENST00000306853 AGLP35573 1532 aa16.87■□□□□ 0.29
CSPG4P2Y-201ENST00000306853 MADDQ8WXG6 1647 aa16.87■□□□□ 0.29
CSPG4P2Y-201ENST00000306853 RIMS1Q86UR5 1692 aaKnown RBP16.87■□□□□ 0.29
CSPG4P2Y-201ENST00000306853 ABCC5O15440 1437 aa16.85■□□□□ 0.29
CSPG4P2Y-201ENST00000306853 KDM4FA0A1W2PPD8 638 aa16.83■□□□□ 0.28
CSPG4P2Y-201ENST00000306853 MLECQ14165 292 aa16.83■□□□□ 0.28
CSPG4P2Y-201ENST00000306853 AEBP2Q6ZN18 517 aaPredicted RBP16.83■□□□□ 0.28
CSPG4P2Y-201ENST00000306853 EIF2AK4Q9P2K8 1649 aaKnown RBP16.82■□□□□ 0.28
CSPG4P2Y-201ENST00000306853 RRBP1Q9P2E9 1410 aaKnown RBP16.81■□□□□ 0.28
CSPG4P2Y-201ENST00000306853 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.81■□□□□ 0.28
CSPG4P2Y-201ENST00000306853 DUOX2Q9NRD8 1548 aa16.8■□□□□ 0.28
CSPG4P2Y-201ENST00000306853 DHX29Q7Z478 1369 aaKnown RBP16.79■□□□□ 0.28
CSPG4P2Y-201ENST00000306853 ANKRD30AQ9BXX3 1397 aa16.78■□□□□ 0.28
CSPG4P2Y-201ENST00000306853 KIF15Q9NS87 1388 aa16.78■□□□□ 0.28
CSPG4P2Y-201ENST00000306853 ADGRL2O95490 1459 aa16.78■□□□□ 0.28
CSPG4P2Y-201ENST00000306853 MROH2AA6NES4 1674 aa16.76■□□□□ 0.27
CSPG4P2Y-201ENST00000306853 CLTCQ00610 1675 aaKnown RBP16.76■□□□□ 0.27
CSPG4P2Y-201ENST00000306853 ESF1Q9H501 851 aaKnown RBP16.76■□□□□ 0.27
CSPG4P2Y-201ENST00000306853 CHIC2Q9UKJ5 165 aa16.76■□□□□ 0.27
CSPG4P2Y-201ENST00000306853 PTPRMP28827 1452 aa16.75■□□□□ 0.27
CSPG4P2Y-201ENST00000306853 RNF17Q9BXT8 1623 aaKnown RBP16.75■□□□□ 0.27
CSPG4P2Y-201ENST00000306853 ERBINQ96RT1 1412 aa16.75■□□□□ 0.27
CSPG4P2Y-201ENST00000306853 ITGAEP38570 1179 aa16.74■□□□□ 0.27
CSPG4P2Y-201ENST00000306853 CNTLNQ9NXG0 1405 aa16.73■□□□□ 0.27
CSPG4P2Y-201ENST00000306853 ZC3H13Q5T200 1668 aaKnown RBP16.73■□□□□ 0.27
CSPG4P2Y-201ENST00000306853 RRP7BPQ9NSQ0 103 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms