RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 PLCH2O75038 1416 aa15.24■□□□□ 0.03
UPF3B-201ENST00000276201 CLSPNQ9HAW4 1339 aa15.23■□□□□ 0.03
UPF3B-201ENST00000276201 MYO5CQ9NQX4 1742 aa15.23■□□□□ 0.03
UPF3B-201ENST00000276201 FANCAO15360 1455 aa15.23■□□□□ 0.03
UPF3B-201ENST00000276201 PHLDB1Q86UU1 1377 aa15.23■□□□□ 0.03
UPF3B-201ENST00000276201 CFAP74Q9C0B2 1584 aa15.22■□□□□ 0.03
UPF3B-201ENST00000276201 TIAM1Q13009 1591 aa15.21■□□□□ 0.03
UPF3B-201ENST00000276201 MTUS2Q5JR59 1369 aa15.21■□□□□ 0.03
UPF3B-201ENST00000276201 AKNAQ7Z591 1439 aa15.2■□□□□ 0.02
UPF3B-201ENST00000276201 EHBP1L1Q8N3D4 1523 aa15.2■□□□□ 0.02
UPF3B-201ENST00000276201 PREX2Q70Z35 1606 aa15.18■□□□□ 0.02
UPF3B-201ENST00000276201 FRMPD1Q5SYB0 1578 aa15.18■□□□□ 0.02
UPF3B-201ENST00000276201 CDC42BPBQ9Y5S2 1711 aa15.18■□□□□ 0.02
UPF3B-201ENST00000276201 ARHGAP5Q13017 1502 aa15.18■□□□□ 0.02
UPF3B-201ENST00000276201 CDC42BPAQ5VT25 1732 aa15.17■□□□□ 0.02
UPF3B-201ENST00000276201 MAP3K1Q13233 1512 aa15.16■□□□□ 0.02
UPF3B-201ENST00000276201 EFCAB2Q5VUJ9 269 aa15.16■□□□□ 0.02
UPF3B-201ENST00000276201 RAPGEF3O95398 923 aa15.16■□□□□ 0.02
UPF3B-201ENST00000276201 ADGRL1O94910 1474 aa15.15■□□□□ 0.02
UPF3B-201ENST00000276201 DENND4BO75064 1496 aaPredicted RBP15.15■□□□□ 0.02
UPF3B-201ENST00000276201 GPATCH8Q9UKJ3 1502 aaKnown RBP15.14■□□□□ 0.01
UPF3B-201ENST00000276201 LRRC9Q6ZRR7 1453 aa15.14■□□□□ 0.01
UPF3B-201ENST00000276201 RICTORQ6R327 1708 aa15.14■□□□□ 0.01
UPF3B-201ENST00000276201 SCAPERQ9BY12 1400 aa15.13■□□□□ 0.01
UPF3B-201ENST00000276201 CCNB3Q8WWL7 1395 aa15.12■□□□□ 0.01
UPF3B-201ENST00000276201 SUPT6HQ7KZ85 1726 aaKnown RBP15.12■□□□□ 0.01
UPF3B-201ENST00000276201 POGZQ7Z3K3 1410 aa15.11■□□□□ 0.01
UPF3B-201ENST00000276201 NCOA2Q15596 1464 aa15.11■□□□□ 0.01
UPF3B-201ENST00000276201 KANK4Q5T7N3 995 aaPredicted RBP15.11■□□□□ 0.01
UPF3B-201ENST00000276201 ABCC1P33527 1531 aa15.1■□□□□ 0.01
UPF3B-201ENST00000276201 MIER1Q8N108 512 aa15.09■□□□□ 0.01
UPF3B-201ENST00000276201 ZMYM4Q5VZL5 1548 aa15.09■□□□□ 0.01
UPF3B-201ENST00000276201 SAMD9LQ8IVG5 1584 aa15.09■□□□□ 0.01
UPF3B-201ENST00000276201 ARHGEF12Q9NZN5 1544 aa15.08■□□□□ 0
UPF3B-201ENST00000276201 ITSN2Q9NZM3 1697 aa15.08■□□□□ 0
UPF3B-201ENST00000276201 CFDP1Q9UEE9 299 aaPredicted RBP15.07■□□□□ 0
UPF3B-201ENST00000276201 APLP2Q06481 763 aa15.06■□□□□ 0
UPF3B-201ENST00000276201 ARHGEF40Q8TER5 1519 aa15.06■□□□□ 0
UPF3B-201ENST00000276201 ZNF518AQ6AHZ1 1483 aa15.05■□□□□ 0
UPF3B-201ENST00000276201 ZNF777Q9ULD5 760 aaPredicted RBP15.05■□□□□ 0
UPF3B-201ENST00000276201 KDM5CP41229 1560 aa15.05■□□□□ -0
UPF3B-201ENST00000276201 TRAPPC8Q9Y2L5 1435 aa15.04■□□□□ -0
UPF3B-201ENST00000276201 SYCP2Q9BX26 1530 aa15.04■□□□□ -0
UPF3B-201ENST00000276201 ZFYVE16Q7Z3T8 1539 aa15.04■□□□□ -0
UPF3B-201ENST00000276201 YEATS2Q9ULM3 1422 aa15.03■□□□□ -0
UPF3B-201ENST00000276201 AFAP1Q8N556 730 aa15.03■□□□□ -0
UPF3B-201ENST00000276201 MAGI2Q86UL8 1455 aa15.03■□□□□ -0
UPF3B-201ENST00000276201 PLEKHH2Q8IVE3 1493 aa15.02■□□□□ -0
UPF3B-201ENST00000276201 ZNF644Q9H582 1327 aaPredicted RBP15.02□□□□□ -0.01
UPF3B-201ENST00000276201 KIAA1107Q9UPP5 1409 aa15.02□□□□□ -0.01
UPF3B-201ENST00000276201 HECW2Q9P2P5 1572 aa15□□□□□ -0.01
UPF3B-201ENST00000276201 HNRNPMP52272 730 aaKnown RBP eCLIP15□□□□□ -0.01
UPF3B-201ENST00000276201 KDM4FA0A1W2PPD8 638 aa14.99□□□□□ -0.01
UPF3B-201ENST00000276201 CAMSAP2Q08AD1 1489 aa14.99□□□□□ -0.01
UPF3B-201ENST00000276201 MYOM3Q5VTT5 1437 aa14.99□□□□□ -0.01
UPF3B-201ENST00000276201 MLH3Q9UHC1 1453 aa14.98□□□□□ -0.01
UPF3B-201ENST00000276201 MBD5Q9P267 1494 aa14.97□□□□□ -0.01
UPF3B-201ENST00000276201 SIGLEC1Q9BZZ2 1709 aa14.97□□□□□ -0.01
UPF3B-201ENST00000276201 DIP2CQ9Y2E4 1556 aa14.96□□□□□ -0.01
UPF3B-201ENST00000276201 ABCA6Q8N139 1617 aa14.96□□□□□ -0.02
UPF3B-201ENST00000276201 ATP10AO60312 1499 aa14.96□□□□□ -0.02
UPF3B-201ENST00000276201 KIDINS220Q9ULH0 1771 aa14.95□□□□□ -0.02
UPF3B-201ENST00000276201 MIA2Q96PC5 1412 aa14.95□□□□□ -0.02
UPF3B-201ENST00000276201 YTHDC1Q96MU7 727 aaKnown RBP14.95□□□□□ -0.02
UPF3B-201ENST00000276201 DHX57Q6P158 1386 aaKnown RBP14.94□□□□□ -0.02
UPF3B-201ENST00000276201 INO80Q9ULG1 1556 aaPredicted RBP14.94□□□□□ -0.02
UPF3B-201ENST00000276201 C9orf84Q5VXU9 1444 aa14.94□□□□□ -0.02
UPF3B-201ENST00000276201 MYT1LQ9UL68 1186 aa14.93□□□□□ -0.02
UPF3B-201ENST00000276201 SPAG9O60271 1321 aaKnown RBP14.93□□□□□ -0.02
UPF3B-201ENST00000276201 ATP7AQ04656 1500 aa14.92□□□□□ -0.02
UPF3B-201ENST00000276201 ARHGEF5Q12774 1597 aa14.92□□□□□ -0.02
UPF3B-201ENST00000276201 CCDC141Q6ZP82 1450 aa14.92□□□□□ -0.02
UPF3B-201ENST00000276201 RRBP1Q9P2E9 1410 aaKnown RBP14.92□□□□□ -0.02
UPF3B-201ENST00000276201 BCORL1Q5H9F3 1711 aa14.92□□□□□ -0.02
UPF3B-201ENST00000276201 ARID4BQ4LE39 1312 aaPredicted RBP14.91□□□□□ -0.02
UPF3B-201ENST00000276201 REREQ9P2R6 1566 aa14.91□□□□□ -0.02
UPF3B-201ENST00000276201 FGD6Q6ZV73 1430 aa14.91□□□□□ -0.02
UPF3B-201ENST00000276201 ADAMTSL3P82987 1691 aa14.9□□□□□ -0.02
UPF3B-201ENST00000276201 PTPN23Q9H3S7 1636 aa14.9□□□□□ -0.02
UPF3B-201ENST00000276201 AEBP2Q6ZN18 517 aaPredicted RBP14.89□□□□□ -0.03
UPF3B-201ENST00000276201 TCOF1Q13428 1488 aaKnown RBP14.88□□□□□ -0.03
UPF3B-201ENST00000276201 RTEL1-TNFRSF6BF6WH68 1400 aa14.87□□□□□ -0.03
UPF3B-201ENST00000276201 RSPH4AQ5TD94 716 aa14.87□□□□□ -0.03
UPF3B-201ENST00000276201 MADDQ8WXG6 1647 aa14.86□□□□□ -0.03
UPF3B-201ENST00000276201 AGLP35573 1532 aa14.86□□□□□ -0.03
UPF3B-201ENST00000276201 PLXNC1O60486 1568 aa14.85□□□□□ -0.03
UPF3B-201ENST00000276201 SUPT16HQ9Y5B9 1047 aaKnown RBP14.84□□□□□ -0.03
UPF3B-201ENST00000276201 MAST1Q9Y2H9 1570 aa14.84□□□□□ -0.03
UPF3B-201ENST00000276201 MLECQ14165 292 aa14.84□□□□□ -0.03
UPF3B-201ENST00000276201 ADGBQ8N7X0 1667 aa14.84□□□□□ -0.03
UPF3B-201ENST00000276201 A2MP01023 1474 aa14.84□□□□□ -0.03
UPF3B-201ENST00000276201 CROCC2H7BZ55 1655 aa14.83□□□□□ -0.04
UPF3B-201ENST00000276201 ABCC5O15440 1437 aa14.82□□□□□ -0.04
UPF3B-201ENST00000276201 DNMT1P26358 1616 aaKnown RBP14.82□□□□□ -0.04
UPF3B-201ENST00000276201 TSPY4P0CV99 314 aa14.82□□□□□ -0.04
UPF3B-201ENST00000276201 TSPY10P0CW01 314 aa14.82□□□□□ -0.04
UPF3B-201ENST00000276201 RIMS1Q86UR5 1692 aaKnown RBP14.81□□□□□ -0.04
UPF3B-201ENST00000276201 PTPRMP28827 1452 aa14.81□□□□□ -0.04
UPF3B-201ENST00000276201 FER1L4A9Z1Z3 1794 aa14.8□□□□□ -0.04
UPF3B-201ENST00000276201 DAPK1P53355 1430 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms