RNA–Protein interactions for RNA: ENST00000259043.11

TRA2B-201, Transcript of transformer 2 beta homolog, humanhuman

TSL 3

Gene TRA2B, Length 943 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRA2B-201ENST00000259043 ZSWIM6Q9HCJ5 1215 aa14.59□□□□□ -0.07
TRA2B-201ENST00000259043 PKD2Q13563 968 aa14.58□□□□□ -0.08
TRA2B-201ENST00000259043 NLRP6P59044 892 aa14.55□□□□□ -0.08
TRA2B-201ENST00000259043 BCL11BQ9C0K0 894 aaPredicted RBP14.53□□□□□ -0.08
TRA2B-201ENST00000259043 VARS2Q5ST30 1063 aaKnown RBP14.51□□□□□ -0.09
TRA2B-201ENST00000259043 GPR153Q6NV75 609 aa14.5□□□□□ -0.09
TRA2B-201ENST00000259043 FBXO22Q8NEZ5 403 aa14.5□□□□□ -0.09
TRA2B-201ENST00000259043 STK24Q9Y6E0 443 aa14.49□□□□□ -0.09
TRA2B-201ENST00000259043 ECM2O94769 699 aaPredicted RBP14.44□□□□□ -0.1
TRA2B-201ENST00000259043 ZNF687Q8N1G0 1237 aa14.44□□□□□ -0.1
TRA2B-201ENST00000259043 STK25O00506 426 aa14.43□□□□□ -0.1
TRA2B-201ENST00000259043 MFRPQ9BY79 579 aa14.43□□□□□ -0.1
TRA2B-201ENST00000259043 ARSIQ5FYB1 569 aa14.4□□□□□ -0.1
TRA2B-201ENST00000259043 RGL2O15211 777 aa14.37□□□□□ -0.11
TRA2B-201ENST00000259043 RNF166Q96A37 237 aaPredicted RBP14.35□□□□□ -0.11
TRA2B-201ENST00000259043 KIF3CO14782 793 aa14.33□□□□□ -0.12
TRA2B-201ENST00000259043 ZNF316A6NFI3 1004 aaPredicted RBP14.32□□□□□ -0.12
TRA2B-201ENST00000259043 C2orf72A6NCS6 295 aa14.31□□□□□ -0.12
TRA2B-201ENST00000259043 KHSRPQ92945 711 aaKnown RBP eCLIP14.31□□□□□ -0.125e-7■■□□□ 13.4
TRA2B-201ENST00000259043 MYT1LQ9UL68 1186 aa14.31□□□□□ -0.12
TRA2B-201ENST00000259043 PTGER2P43116 358 aa14.28□□□□□ -0.12
TRA2B-201ENST00000259043 SLC34A2O95436 690 aa14.22□□□□□ -0.13
TRA2B-201ENST00000259043 ANKRD13DQ6ZTN6 518 aa14.22□□□□□ -0.13
TRA2B-201ENST00000259043 TMC2Q8TDI7 906 aa14.22□□□□□ -0.13
TRA2B-201ENST00000259043 NUDT7P0C024 238 aa14.21□□□□□ -0.13
TRA2B-201ENST00000259043 AMER1Q5JTC6 1135 aaPredicted RBP14.21□□□□□ -0.13
TRA2B-201ENST00000259043 RTN4Q9NQC3 1192 aaKnown RBP14.21□□□□□ -0.13
TRA2B-201ENST00000259043 PCDHGA4Q9Y5G9 962 aa14.18□□□□□ -0.14
TRA2B-201ENST00000259043 LSM11P83369 360 aaKnown RBP eCLIP14.17□□□□□ -0.14
TRA2B-201ENST00000259043 PBX2P40425 430 aa14.16□□□□□ -0.14
TRA2B-201ENST00000259043 PPP1R37O75864 691 aa14.15□□□□□ -0.14
TRA2B-201ENST00000259043 LHX6Q9UPM6 363 aa14.15□□□□□ -0.14
TRA2B-201ENST00000259043 POTEEQ6S8J3 1075 aa14.07□□□□□ -0.16
TRA2B-201ENST00000259043 HS6ST3Q8IZP7 471 aa14.06□□□□□ -0.16
TRA2B-201ENST00000259043 PSDA5PKW4 1024 aaPredicted RBP14.05□□□□□ -0.16
TRA2B-201ENST00000259043 AXIN2Q9Y2T1 843 aa14.05□□□□□ -0.16
TRA2B-201ENST00000259043 PTCD2Q8WV60 388 aaKnown RBP14.03□□□□□ -0.16
TRA2B-201ENST00000259043 FOXK1P85037 733 aa14.01□□□□□ -0.17
TRA2B-201ENST00000259043 KDM4FA0A1W2PPD8 638 aa14□□□□□ -0.17
TRA2B-201ENST00000259043 CHGAP10645 457 aaKnown RBP14□□□□□ -0.17
TRA2B-201ENST00000259043 ARHGAP33O14559 1287 aa13.99□□□□□ -0.17
TRA2B-201ENST00000259043 GPHNQ9NQX3 736 aaPredicted RBP13.99□□□□□ -0.17
TRA2B-201ENST00000259043 PLPP6Q8IY26 295 aa13.98□□□□□ -0.17
TRA2B-201ENST00000259043 DNAJC5Q9H3Z4 198 aa13.98□□□□□ -0.17
TRA2B-201ENST00000259043 ADGRD1Q6QNK2 874 aa13.95□□□□□ -0.18
TRA2B-201ENST00000259043 TBC1D12O60347 775 aa13.93□□□□□ -0.18
TRA2B-201ENST00000259043 DSG2Q14126 1118 aa13.92□□□□□ -0.18
TRA2B-201ENST00000259043 DCAF8L2P0C7V8 631 aa13.91□□□□□ -0.18
TRA2B-201ENST00000259043 NKX1-1Q15270 411 aaPredicted RBP13.9□□□□□ -0.18
TRA2B-201ENST00000259043 TK2O00142 265 aa13.89□□□□□ -0.19
TRA2B-201ENST00000259043 PPP4R3BQ5MIZ7 849 aa13.89□□□□□ -0.19
TRA2B-201ENST00000259043 HCSTQ9UBK5 93 aa13.89□□□□□ -0.19
TRA2B-201ENST00000259043 PSEN2P49810 448 aa13.86□□□□□ -0.19
TRA2B-201ENST00000259043 DMRTA1Q5VZB9 504 aa13.86□□□□□ -0.19
TRA2B-201ENST00000259043 RYDENQ9NUL5 291 aaKnown RBP13.85□□□□□ -0.19
TRA2B-201ENST00000259043 HRO43593 1189 aa13.84□□□□□ -0.19
TRA2B-201ENST00000259043 PLA2G2EQ9NZK7 142 aa13.81□□□□□ -0.2
TRA2B-201ENST00000259043 OXER1Q8TDS5 423 aa13.8□□□□□ -0.2
TRA2B-201ENST00000259043 KCNH8Q96L42 1107 aa13.79□□□□□ -0.2
TRA2B-201ENST00000259043 CRISPLD2Q9H0B8 497 aa13.77□□□□□ -0.21
TRA2B-201ENST00000259043 STAC3Q96MF2 364 aa13.76□□□□□ -0.21
TRA2B-201ENST00000259043 KCNK17Q96T54 332 aa13.76□□□□□ -0.21
TRA2B-201ENST00000259043 UPF1Q92900 1129 aaKnown RBP eCLIP13.75□□□□□ -0.21
TRA2B-201ENST00000259043 GTPBP6O43824 516 aaPredicted RBP13.73□□□□□ -0.21
TRA2B-201ENST00000259043 PPP1R15BQ5SWA1 713 aa13.73□□□□□ -0.21
TRA2B-201ENST00000259043 BBXQ8WY36 941 aaPredicted RBP13.71□□□□□ -0.21
TRA2B-201ENST00000259043 KCTD12Q96CX2 325 aaKnown RBP13.71□□□□□ -0.21
TRA2B-201ENST00000259043 ZNF454Q8N9F8 522 aa13.7□□□□□ -0.22
TRA2B-201ENST00000259043 PDE4AP27815 886 aa13.69□□□□□ -0.22
TRA2B-201ENST00000259043 BCL2L12Q9HB09 334 aa13.69□□□□□ -0.22
TRA2B-201ENST00000259043 VPS9D1Q9Y2B5 631 aa13.69□□□□□ -0.22
TRA2B-201ENST00000259043 NCKAP5LQ9HCH0 1330 aa13.67□□□□□ -0.22
TRA2B-201ENST00000259043 SLC4A5Q9BY07 1137 aa13.66□□□□□ -0.22
TRA2B-201ENST00000259043 FOSBP53539 338 aa13.65□□□□□ -0.22
TRA2B-201ENST00000259043 ANO8Q9HCE9 1232 aaPredicted RBP13.63□□□□□ -0.23
TRA2B-201ENST00000259043 PTPREP23469 700 aa13.62□□□□□ -0.23
TRA2B-201ENST00000259043 JPH4Q96JJ6 628 aa13.6□□□□□ -0.23
TRA2B-201ENST00000259043 EVI5O60447 810 aa13.59□□□□□ -0.23
TRA2B-201ENST00000259043 DDX27Q96GQ7 796 aaKnown RBP13.58□□□□□ -0.24
TRA2B-201ENST00000259043 LARP6Q9BRS8 491 aaKnown RBP13.58□□□□□ -0.24
TRA2B-201ENST00000259043 BHMG1C9JSJ3 638 aaPredicted RBP13.57□□□□□ -0.24
TRA2B-201ENST00000259043 PTPN5P54829 565 aa13.56□□□□□ -0.24
TRA2B-201ENST00000259043 ZBED2Q9BTP6 218 aa13.56□□□□□ -0.24
TRA2B-201ENST00000259043 ZDHHC16Q969W1 377 aa13.55□□□□□ -0.24
TRA2B-201ENST00000259043 MAP3K9P80192 1104 aa13.53□□□□□ -0.24
TRA2B-201ENST00000259043 MFSD10Q14728 455 aa13.53□□□□□ -0.24
TRA2B-201ENST00000259043 ADAM33Q9BZ11 813 aa13.53□□□□□ -0.24
TRA2B-201ENST00000259043 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.53□□□□□ -0.24
TRA2B-201ENST00000259043 GOLGA8CPA6NN73 597 aa13.52□□□□□ -0.25
TRA2B-201ENST00000259043 THSD4Q6ZMP0 1018 aa13.51□□□□□ -0.25
TRA2B-201ENST00000259043 MRPL50Q8N5N7 158 aaKnown RBP13.51□□□□□ -0.25
TRA2B-201ENST00000259043 SPRYD3Q8NCJ5 442 aa13.5□□□□□ -0.25
TRA2B-201ENST00000259043 WNT2BQ93097 391 aa13.49□□□□□ -0.25
TRA2B-201ENST00000259043 NBPF3Q9H094 633 aa13.48□□□□□ -0.25
TRA2B-201ENST00000259043 IFFO2Q5TF58 517 aa13.47□□□□□ -0.25
TRA2B-201ENST00000259043 PAXIP1Q6ZW49 1069 aaPredicted RBP13.46□□□□□ -0.25
TRA2B-201ENST00000259043 EMILIN3Q9NT22 766 aa13.46□□□□□ -0.25
TRA2B-201ENST00000259043 PPP1R3GB7ZBB8 358 aa13.43□□□□□ -0.26
TRA2B-201ENST00000259043 CADPS2Q86UW7 1296 aa13.43□□□□□ -0.26
TRA2B-201ENST00000259043 CFAP44Q96MT7 982 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms