RNA–Protein interactions for RNA: ENST00000251739.9

VPS50-201, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS50, Length 1,193 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-201ENST00000251739 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.22■□□□□ 0.35
VPS50-201ENST00000251739 HNRNPUL2Q1KMD3 747 aaKnown RBP17.22■□□□□ 0.35
VPS50-201ENST00000251739 FANCAO15360 1455 aa17.22■□□□□ 0.35
VPS50-201ENST00000251739 PLEKHD1A6NEE1 506 aa17.21■□□□□ 0.35
VPS50-201ENST00000251739 AKNAQ7Z591 1439 aa17.21■□□□□ 0.34
VPS50-201ENST00000251739 DENND4BO75064 1496 aaPredicted RBP17.2■□□□□ 0.34
VPS50-201ENST00000251739 FMN1Q68DA7 1419 aa17.2■□□□□ 0.34
VPS50-201ENST00000251739 LRRIQ1Q96JM4 1722 aa17.19■□□□□ 0.34
VPS50-201ENST00000251739 MADDQ8WXG6 1647 aa17.19■□□□□ 0.34
VPS50-201ENST00000251739 PTPRMP28827 1452 aa17.18■□□□□ 0.34
VPS50-201ENST00000251739 SIGLEC1Q9BZZ2 1709 aa17.18■□□□□ 0.34
VPS50-201ENST00000251739 MYO5CQ9NQX4 1742 aa17.17■□□□□ 0.34
VPS50-201ENST00000251739 KIF14Q15058 1648 aa17.14■□□□□ 0.33
VPS50-201ENST00000251739 PLCH2O75038 1416 aa17.13■□□□□ 0.33
VPS50-201ENST00000251739 ZFYVE16Q7Z3T8 1539 aa17.13■□□□□ 0.33
VPS50-201ENST00000251739 SLC4A2P04920 1241 aa17.13■□□□□ 0.33
VPS50-201ENST00000251739 POGZQ7Z3K3 1410 aa17.13■□□□□ 0.33
VPS50-201ENST00000251739 MAGI2Q86UL8 1455 aa17.12■□□□□ 0.33
VPS50-201ENST00000251739 RIMS1Q86UR5 1692 aaKnown RBP17.12■□□□□ 0.33
VPS50-201ENST00000251739 UBTFP17480 764 aaKnown RBP17.11■□□□□ 0.33
VPS50-201ENST00000251739 YEATS2Q9ULM3 1422 aa17.1■□□□□ 0.33
VPS50-201ENST00000251739 TROQ12816 1431 aaPredicted RBP17.09■□□□□ 0.33
VPS50-201ENST00000251739 PCF11O94913 1555 aaKnown RBP17.08■□□□□ 0.32
VPS50-201ENST00000251739 SCAPERQ9BY12 1400 aa17.07■□□□□ 0.32
VPS50-201ENST00000251739 ILDR1Q86SU0 546 aaPredicted RBP17.06■□□□□ 0.32
VPS50-201ENST00000251739 EHMT2Q96KQ7 1210 aa17.06■□□□□ 0.32
VPS50-201ENST00000251739 CDC42BPBQ9Y5S2 1711 aa17.06■□□□□ 0.32
VPS50-201ENST00000251739 KDM5CP41229 1560 aa17.06■□□□□ 0.32
VPS50-201ENST00000251739 LMTK3Q96Q04 1460 aa17.05■□□□□ 0.32
VPS50-201ENST00000251739 FER1L4A9Z1Z3 1794 aa17.05■□□□□ 0.32
VPS50-201ENST00000251739 PREX2Q70Z35 1606 aa17.04■□□□□ 0.32
VPS50-201ENST00000251739 CASKIN1Q8WXD9 1431 aa17.04■□□□□ 0.32
VPS50-201ENST00000251739 ARID4BQ4LE39 1312 aaPredicted RBP17.03■□□□□ 0.32
VPS50-201ENST00000251739 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.03■□□□□ 0.32
VPS50-201ENST00000251739 CCDC18Q5T9S5 1454 aa17.02■□□□□ 0.32
VPS50-201ENST00000251739 CDK11AQ9UQ88 783 aaPredicted RBP17.02■□□□□ 0.32
VPS50-201ENST00000251739 CLIP1P30622 1438 aa17.02■□□□□ 0.31
VPS50-201ENST00000251739 ARHGEF12Q9NZN5 1544 aa17.01■□□□□ 0.31
VPS50-201ENST00000251739 ZNF518AQ6AHZ1 1483 aa17.01■□□□□ 0.31
VPS50-201ENST00000251739 ARHGAP5Q13017 1502 aa17.01■□□□□ 0.31
VPS50-201ENST00000251739 ZBTB22O15209 634 aa17■□□□□ 0.31
VPS50-201ENST00000251739 FOXD4L1Q9NU39 408 aa17■□□□□ 0.31
VPS50-201ENST00000251739 ATP10AO60312 1499 aa16.99■□□□□ 0.31
VPS50-201ENST00000251739 CDC42BPAQ5VT25 1732 aa16.99■□□□□ 0.31
VPS50-201ENST00000251739 C9orf84Q5VXU9 1444 aa16.99■□□□□ 0.31
VPS50-201ENST00000251739 EFCAB2Q5VUJ9 269 aa16.99■□□□□ 0.31
VPS50-201ENST00000251739 FYCO1Q9BQS8 1478 aa16.99■□□□□ 0.31
VPS50-201ENST00000251739 REREQ9P2R6 1566 aa16.98■□□□□ 0.31
VPS50-201ENST00000251739 DIP2CQ9Y2E4 1556 aa16.98■□□□□ 0.31
VPS50-201ENST00000251739 ABCC1P33527 1531 aa16.98■□□□□ 0.31
VPS50-201ENST00000251739 ITSN2Q9NZM3 1697 aa16.97■□□□□ 0.31
VPS50-201ENST00000251739 ATP1B4Q9UN42 357 aaPredicted RBP16.97■□□□□ 0.31
VPS50-201ENST00000251739 ABCA6Q8N139 1617 aa16.96■□□□□ 0.31
VPS50-201ENST00000251739 MLH3Q9UHC1 1453 aa16.93■□□□□ 0.3
VPS50-201ENST00000251739 PREX1Q8TCU6 1659 aa16.91■□□□□ 0.3
VPS50-201ENST00000251739 KIDINS220Q9ULH0 1771 aa16.91■□□□□ 0.3
VPS50-201ENST00000251739 AGLP35573 1532 aa16.9■□□□□ 0.3
VPS50-201ENST00000251739 TRAPPC8Q9Y2L5 1435 aa16.89■□□□□ 0.29
VPS50-201ENST00000251739 AFAP1Q8N556 730 aa16.89■□□□□ 0.29
VPS50-201ENST00000251739 SAMD9LQ8IVG5 1584 aa16.89■□□□□ 0.29
VPS50-201ENST00000251739 MLECQ14165 292 aa16.86■□□□□ 0.29
VPS50-201ENST00000251739 SETD1BQ9UPS6 1966 aaKnown RBP16.86■□□□□ 0.29
VPS50-201ENST00000251739 GPATCH8Q9UKJ3 1502 aaKnown RBP16.85■□□□□ 0.29
VPS50-201ENST00000251739 C3P01024 1663 aa16.85■□□□□ 0.29
VPS50-201ENST00000251739 SYCP2Q9BX26 1530 aa16.84■□□□□ 0.29
VPS50-201ENST00000251739 HSPA2P54652 639 aa16.83■□□□□ 0.28
VPS50-201ENST00000251739 INO80Q9ULG1 1556 aaPredicted RBP16.82■□□□□ 0.28
VPS50-201ENST00000251739 FBXO41Q8TF61 875 aa16.81■□□□□ 0.28
VPS50-201ENST00000251739 U3KPZ7 1027 aaPredicted RBP16.81■□□□□ 0.28
VPS50-201ENST00000251739 STRCQ7RTU9 1775 aa16.81■□□□□ 0.28
VPS50-201ENST00000251739 RNF39Q9H2S5 420 aa16.8■□□□□ 0.28
VPS50-201ENST00000251739 PLXNC1O60486 1568 aa16.8■□□□□ 0.28
VPS50-201ENST00000251739 MROH2AA6NES4 1674 aa16.78■□□□□ 0.28
VPS50-201ENST00000251739 TIAM1Q13009 1591 aa16.78■□□□□ 0.28
VPS50-201ENST00000251739 ATP7AQ04656 1500 aa16.78■□□□□ 0.28
VPS50-201ENST00000251739 KIAA1107Q9UPP5 1409 aa16.78■□□□□ 0.28
VPS50-201ENST00000251739 MYCNP04198 464 aaPredicted RBP16.77■□□□□ 0.28
VPS50-201ENST00000251739 PLEKHH2Q8IVE3 1493 aa16.77■□□□□ 0.28
VPS50-201ENST00000251739 EHBP1L1Q8N3D4 1523 aa16.76■□□□□ 0.27
VPS50-201ENST00000251739 CEBPAP49715 358 aaPredicted RBP16.76■□□□□ 0.27
VPS50-201ENST00000251739 SUPT6HQ7KZ85 1726 aaKnown RBP16.74■□□□□ 0.27
VPS50-201ENST00000251739 UHRF1BP1Q6BDS2 1440 aa16.74■□□□□ 0.27
VPS50-201ENST00000251739 CNTLNQ9NXG0 1405 aa16.74■□□□□ 0.27
VPS50-201ENST00000251739 CEP162Q5TB80 1403 aa16.73■□□□□ 0.27
VPS50-201ENST00000251739 CCNB3Q8WWL7 1395 aa16.73■□□□□ 0.27
VPS50-201ENST00000251739 ADGBQ8N7X0 1667 aa16.72■□□□□ 0.27
VPS50-201ENST00000251739 MTUS2Q5JR59 1369 aa16.72■□□□□ 0.27
VPS50-201ENST00000251739 MYT1LQ9UL68 1186 aa16.71■□□□□ 0.27
VPS50-201ENST00000251739 MBD5Q9P267 1494 aa16.7■□□□□ 0.26
VPS50-201ENST00000251739 SPAG9O60271 1321 aaKnown RBP16.7■□□□□ 0.26
VPS50-201ENST00000251739 CFDP1Q9UEE9 299 aaPredicted RBP16.69■□□□□ 0.26
VPS50-201ENST00000251739 ZNF777Q9ULD5 760 aaPredicted RBP16.69■□□□□ 0.26
VPS50-201ENST00000251739 CLTCQ00610 1675 aaKnown RBP16.69■□□□□ 0.26
VPS50-201ENST00000251739 A2MP01023 1474 aa16.68■□□□□ 0.26
VPS50-201ENST00000251739 HNRNPMP52272 730 aaKnown RBP eCLIP16.68■□□□□ 0.26
VPS50-201ENST00000251739 NPATQ14207 1427 aa16.68■□□□□ 0.26
VPS50-201ENST00000251739 ZNF142P52746 1687 aaPredicted RBP16.67■□□□□ 0.26
VPS50-201ENST00000251739 PTPRTO14522 1441 aa16.64■□□□□ 0.25
VPS50-201ENST00000251739 MYO3AQ8NEV4 1616 aa16.64■□□□□ 0.25
VPS50-201ENST00000251739 RTEL1-TNFRSF6BF6WH68 1400 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms