RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 AFAP1Q8N556 730 aa13.16□□□□□ -0.3
VPS4B-201ENST00000238497 TTC37Q6PGP7 1564 aa13.15□□□□□ -0.3
VPS4B-201ENST00000238497 PLCH2O75038 1416 aa13.14□□□□□ -0.31
VPS4B-201ENST00000238497 ARHGAP5Q13017 1502 aa13.14□□□□□ -0.31
VPS4B-201ENST00000238497 ARAP3Q8WWN8 1544 aa13.14□□□□□ -0.31
VPS4B-201ENST00000238497 CCDC18Q5T9S5 1454 aa13.14□□□□□ -0.31
VPS4B-201ENST00000238497 CFDP1Q9UEE9 299 aaPredicted RBP13.13□□□□□ -0.31
VPS4B-201ENST00000238497 FYCO1Q9BQS8 1478 aa13.13□□□□□ -0.31
VPS4B-201ENST00000238497 KIF14Q15058 1648 aa13.12□□□□□ -0.31
VPS4B-201ENST00000238497 CCNB3Q8WWL7 1395 aa13.1□□□□□ -0.31
VPS4B-201ENST00000238497 HNRNPMP52272 730 aaKnown RBP eCLIP13.09□□□□□ -0.31
VPS4B-201ENST00000238497 YEATS2Q9ULM3 1422 aa13.07□□□□□ -0.32
VPS4B-201ENST00000238497 ESF1Q9H501 851 aaKnown RBP13.06□□□□□ -0.32
VPS4B-201ENST00000238497 POGZQ7Z3K3 1410 aa13.04□□□□□ -0.32
VPS4B-201ENST00000238497 LRRIQ1Q96JM4 1722 aa13.04□□□□□ -0.32
VPS4B-201ENST00000238497 ZNF644Q9H582 1327 aaPredicted RBP13.04□□□□□ -0.32
VPS4B-201ENST00000238497 CFAP74Q9C0B2 1584 aa13.04□□□□□ -0.32
VPS4B-201ENST00000238497 MYO5CQ9NQX4 1742 aa13.04□□□□□ -0.32
VPS4B-201ENST00000238497 SPAG9O60271 1321 aaKnown RBP13.03□□□□□ -0.32
VPS4B-201ENST00000238497 VPS8Q8N3P4 1428 aa13.02□□□□□ -0.33
VPS4B-201ENST00000238497 TRAPPC8Q9Y2L5 1435 aa13.01□□□□□ -0.33
VPS4B-201ENST00000238497 ZFYVE16Q7Z3T8 1539 aa13.01□□□□□ -0.33
VPS4B-201ENST00000238497 ITGAEP38570 1179 aa13.01□□□□□ -0.33
VPS4B-201ENST00000238497 FRMPD1Q5SYB0 1578 aa13□□□□□ -0.33
VPS4B-201ENST00000238497 ZNF518AQ6AHZ1 1483 aa13□□□□□ -0.33
VPS4B-201ENST00000238497 KANK4Q5T7N3 995 aaPredicted RBP13□□□□□ -0.33
VPS4B-201ENST00000238497 GPATCH8Q9UKJ3 1502 aaKnown RBP13□□□□□ -0.33
VPS4B-201ENST00000238497 ZEB1P37275 1124 aaPredicted RBP12.99□□□□□ -0.33
VPS4B-201ENST00000238497 CEBPAP49715 358 aaPredicted RBP12.99□□□□□ -0.33
VPS4B-201ENST00000238497 ATP10AO60312 1499 aa12.97□□□□□ -0.33
VPS4B-201ENST00000238497 RICTORQ6R327 1708 aa12.97□□□□□ -0.33
VPS4B-201ENST00000238497 GGT6Q6P531 493 aa12.97□□□□□ -0.33
VPS4B-201ENST00000238497 ARHGEF40Q8TER5 1519 aa12.96□□□□□ -0.33
VPS4B-201ENST00000238497 MAGI2Q86UL8 1455 aa12.96□□□□□ -0.33
VPS4B-201ENST00000238497 ARHGEF12Q9NZN5 1544 aa12.96□□□□□ -0.34
VPS4B-201ENST00000238497 TSPY4P0CV99 314 aa12.95□□□□□ -0.34
VPS4B-201ENST00000238497 TSPY10P0CW01 314 aa12.95□□□□□ -0.34
VPS4B-201ENST00000238497 EHBP1L1Q8N3D4 1523 aa12.95□□□□□ -0.34
VPS4B-201ENST00000238497 PTPRMP28827 1452 aa12.95□□□□□ -0.34
VPS4B-201ENST00000238497 HSPA2P54652 639 aa12.95□□□□□ -0.34
VPS4B-201ENST00000238497 C9orf84Q5VXU9 1444 aa12.95□□□□□ -0.34
VPS4B-201ENST00000238497 CDC42BPBQ9Y5S2 1711 aa12.94□□□□□ -0.34
VPS4B-201ENST00000238497 NCOA2Q15596 1464 aa12.94□□□□□ -0.34
VPS4B-201ENST00000238497 SYCP2Q9BX26 1530 aa12.94□□□□□ -0.34
VPS4B-201ENST00000238497 PREX2Q70Z35 1606 aa12.94□□□□□ -0.34
VPS4B-201ENST00000238497 ABCC1P33527 1531 aa12.92□□□□□ -0.34
VPS4B-201ENST00000238497 ZMYM4Q5VZL5 1548 aa12.92□□□□□ -0.34
VPS4B-201ENST00000238497 CDC42BPAQ5VT25 1732 aa12.92□□□□□ -0.34
VPS4B-201ENST00000238497 MADDQ8WXG6 1647 aa12.91□□□□□ -0.34
VPS4B-201ENST00000238497 TIAM1Q13009 1591 aa12.91□□□□□ -0.34
VPS4B-201ENST00000238497 PLEKHH2Q8IVE3 1493 aa12.91□□□□□ -0.34
VPS4B-201ENST00000238497 LRRC9Q6ZRR7 1453 aa12.9□□□□□ -0.34
VPS4B-201ENST00000238497 SAMD9LQ8IVG5 1584 aa12.89□□□□□ -0.35
VPS4B-201ENST00000238497 HECW2Q9P2P5 1572 aa12.89□□□□□ -0.35
VPS4B-201ENST00000238497 KIF3BO15066 747 aa12.89□□□□□ -0.35
VPS4B-201ENST00000238497 FAM50AQ14320 339 aaKnown RBP12.89□□□□□ -0.35
VPS4B-201ENST00000238497 MLH3Q9UHC1 1453 aa12.89□□□□□ -0.35
VPS4B-201ENST00000238497 BCORL1Q5H9F3 1711 aa12.88□□□□□ -0.35
VPS4B-201ENST00000238497 RIMS1Q86UR5 1692 aaKnown RBP12.88□□□□□ -0.35
VPS4B-201ENST00000238497 KIAA1107Q9UPP5 1409 aa12.88□□□□□ -0.35
VPS4B-201ENST00000238497 SUPT6HQ7KZ85 1726 aaKnown RBP12.87□□□□□ -0.35
VPS4B-201ENST00000238497 CHIC2Q9UKJ5 165 aa12.87□□□□□ -0.35
VPS4B-201ENST00000238497 KDM5CP41229 1560 aa12.86□□□□□ -0.35
VPS4B-201ENST00000238497 ADAMTSL3P82987 1691 aa12.86□□□□□ -0.35
VPS4B-201ENST00000238497 RSPH4AQ5TD94 716 aa12.85□□□□□ -0.35
VPS4B-201ENST00000238497 DIP2CQ9Y2E4 1556 aa12.85□□□□□ -0.35
VPS4B-201ENST00000238497 ITSN2Q9NZM3 1697 aa12.85□□□□□ -0.35
VPS4B-201ENST00000238497 CAMSAP2Q08AD1 1489 aa12.84□□□□□ -0.35
VPS4B-201ENST00000238497 ABCA6Q8N139 1617 aa12.84□□□□□ -0.35
VPS4B-201ENST00000238497 A2MP01023 1474 aa12.83□□□□□ -0.36
VPS4B-201ENST00000238497 ATP7AQ04656 1500 aa12.83□□□□□ -0.36
VPS4B-201ENST00000238497 SIGLEC1Q9BZZ2 1709 aa12.82□□□□□ -0.36
VPS4B-201ENST00000238497 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.82□□□□□ -0.36
VPS4B-201ENST00000238497 RRP7BPQ9NSQ0 103 aa12.82□□□□□ -0.36
VPS4B-201ENST00000238497 MYOM3Q5VTT5 1437 aa12.82□□□□□ -0.36
VPS4B-201ENST00000238497 CCDC141Q6ZP82 1450 aa12.82□□□□□ -0.36
VPS4B-201ENST00000238497 MBD5Q9P267 1494 aa12.81□□□□□ -0.36
VPS4B-201ENST00000238497 KIDINS220Q9ULH0 1771 aa12.81□□□□□ -0.36
VPS4B-201ENST00000238497 WASHC2CQ9Y4E1 1318 aa12.81□□□□□ -0.36
VPS4B-201ENST00000238497 FER1L4A9Z1Z3 1794 aa12.8□□□□□ -0.36
VPS4B-201ENST00000238497 ZMYM3Q14202 1370 aa12.78□□□□□ -0.36
VPS4B-201ENST00000238497 DHX29Q7Z478 1369 aaKnown RBP12.78□□□□□ -0.36
VPS4B-201ENST00000238497 MAP3K1Q13233 1512 aa12.77□□□□□ -0.37
VPS4B-201ENST00000238497 UHRF1BP1Q6BDS2 1440 aa12.76□□□□□ -0.37
VPS4B-201ENST00000238497 MIA2Q96PC5 1412 aa12.75□□□□□ -0.37
VPS4B-201ENST00000238497 FBXO31Q5XUX0 539 aaPredicted RBP12.75□□□□□ -0.37
VPS4B-201ENST00000238497 RTEL1-TNFRSF6BF6WH68 1400 aa12.75□□□□□ -0.37
VPS4B-201ENST00000238497 CNTLNQ9NXG0 1405 aa12.75□□□□□ -0.37
VPS4B-201ENST00000238497 LMTK3Q96Q04 1460 aa12.75□□□□□ -0.37
VPS4B-201ENST00000238497 AGLP35573 1532 aa12.75□□□□□ -0.37
VPS4B-201ENST00000238497 FGD6Q6ZV73 1430 aa12.74□□□□□ -0.37
VPS4B-201ENST00000238497 INO80Q9ULG1 1556 aaPredicted RBP12.72□□□□□ -0.37
VPS4B-201ENST00000238497 KIF15Q9NS87 1388 aa12.72□□□□□ -0.37
VPS4B-201ENST00000238497 ILDR1Q86SU0 546 aaPredicted RBP12.72□□□□□ -0.37
VPS4B-201ENST00000238497 REREQ9P2R6 1566 aa12.71□□□□□ -0.37
VPS4B-201ENST00000238497 PPP6R1Q9UPN7 881 aa12.7□□□□□ -0.38
VPS4B-201ENST00000238497 SETD1BQ9UPS6 1966 aaKnown RBP12.7□□□□□ -0.38
VPS4B-201ENST00000238497 ABCC5O15440 1437 aa12.69□□□□□ -0.38
VPS4B-201ENST00000238497 YTHDC1Q96MU7 727 aaKnown RBP12.69□□□□□ -0.38
VPS4B-201ENST00000238497 DMRT2Q9Y5R5 561 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms