RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 CDC42BPBQ9Y5S2 1711 aa33.83■■■■□ 3.01
CDX1-201ENST00000231656 ITGAEP38570 1179 aa33.82■■■■□ 3
CDX1-201ENST00000231656 ABCA9Q8IUA7 1624 aa33.79■■■■□ 3
CDX1-201ENST00000231656 ZNF644Q9H582 1327 aaPredicted RBP33.78■■■■□ 3
CDX1-201ENST00000231656 CAMSAP2Q08AD1 1489 aa33.76■■■□□ 2.99
CDX1-201ENST00000231656 ZNF777Q9ULD5 760 aaPredicted RBP33.74■■■□□ 2.99
CDX1-201ENST00000231656 PLCH2O75038 1416 aa33.74■■■□□ 2.99
CDX1-201ENST00000231656 ARHGAP5Q13017 1502 aa33.72■■■□□ 2.99
CDX1-201ENST00000231656 DNAJC5Q9H3Z4 198 aa33.7■■■□□ 2.99
CDX1-201ENST00000231656 PTPRKQ15262 1439 aa33.66■■■□□ 2.98
CDX1-201ENST00000231656 SAMD9LQ8IVG5 1584 aa33.66■■■□□ 2.98
CDX1-201ENST00000231656 ARAP3Q8WWN8 1544 aa33.66■■■□□ 2.98
CDX1-201ENST00000231656 DNMT1P26358 1616 aaKnown RBP33.65■■■□□ 2.98
CDX1-201ENST00000231656 DAPK1P53355 1430 aa33.61■■■□□ 2.97
CDX1-201ENST00000231656 EFCAB2Q5VUJ9 269 aa33.6■■■□□ 2.97
CDX1-201ENST00000231656 ABCC5O15440 1437 aa33.59■■■□□ 2.97
CDX1-201ENST00000231656 CD109Q6YHK3 1445 aa33.57■■■□□ 2.96
CDX1-201ENST00000231656 GLI2P10070 1586 aa33.56■■■□□ 2.96
CDX1-201ENST00000231656 DIP2BQ9P265 1576 aa33.55■■■□□ 2.96
CDX1-201ENST00000231656 FANCAO15360 1455 aa33.54■■■□□ 2.96
CDX1-201ENST00000231656 MBD5Q9P267 1494 aa33.54■■■□□ 2.96
CDX1-201ENST00000231656 HNRNPMP52272 730 aaKnown RBP eCLIP33.53■■■□□ 2.96
CDX1-201ENST00000231656 DHX57Q6P158 1386 aaKnown RBP33.53■■■□□ 2.96
CDX1-201ENST00000231656 PLEKHH2Q8IVE3 1493 aa33.53■■■□□ 2.96
CDX1-201ENST00000231656 SYCP2Q9BX26 1530 aa33.52■■■□□ 2.96
CDX1-201ENST00000231656 ARHGEF5Q12774 1597 aa33.52■■■□□ 2.96
CDX1-201ENST00000231656 CROCC2H7BZ55 1655 aa33.52■■■□□ 2.96
CDX1-201ENST00000231656 MAP3K4Q9Y6R4 1608 aa33.51■■■□□ 2.96
CDX1-201ENST00000231656 KIAA1107Q9UPP5 1409 aa33.51■■■□□ 2.95
CDX1-201ENST00000231656 CHIC2Q9UKJ5 165 aa33.5■■■□□ 2.95
CDX1-201ENST00000231656 ABCC1P33527 1531 aa33.49■■■□□ 2.95
CDX1-201ENST00000231656 FAM69CQ0P6D2 419 aa33.47■■■□□ 2.95
CDX1-201ENST00000231656 ARHGEF12Q9NZN5 1544 aa33.46■■■□□ 2.95
CDX1-201ENST00000231656 AKNAQ7Z591 1439 aa33.46■■■□□ 2.95
CDX1-201ENST00000231656 SETD5Q9C0A6 1442 aa33.45■■■□□ 2.95
CDX1-201ENST00000231656 CCDC141Q6ZP82 1450 aa33.45■■■□□ 2.95
CDX1-201ENST00000231656 CLSPNQ9HAW4 1339 aa33.45■■■□□ 2.94
CDX1-201ENST00000231656 RSPH4AQ5TD94 716 aa33.44■■■□□ 2.94
CDX1-201ENST00000231656 HFM1A2PYH4 1435 aa33.44■■■□□ 2.94
CDX1-201ENST00000231656 RAB3GAP2Q9H2M9 1393 aa33.43■■■□□ 2.94
CDX1-201ENST00000231656 SHANK2Q9UPX8 1470 aa33.42■■■□□ 2.94
CDX1-201ENST00000231656 CFAP74Q9C0B2 1584 aa33.42■■■□□ 2.94
CDX1-201ENST00000231656 ROCK1Q13464 1354 aa33.42■■■□□ 2.94
CDX1-201ENST00000231656 KIF13AQ9H1H9 1805 aa33.41■■■□□ 2.94
CDX1-201ENST00000231656 ADGBQ8N7X0 1667 aa33.4■■■□□ 2.94
CDX1-201ENST00000231656 NAIPQ13075 1403 aa33.39■■■□□ 2.94
CDX1-201ENST00000231656 RRP7BPQ9NSQ0 103 aa33.39■■■□□ 2.94
CDX1-201ENST00000231656 ADGRL1O94910 1474 aa33.38■■■□□ 2.93
CDX1-201ENST00000231656 TSPY4P0CV99 314 aa33.38■■■□□ 2.93
CDX1-201ENST00000231656 TSPY10P0CW01 314 aa33.38■■■□□ 2.93
CDX1-201ENST00000231656 C9orf84Q5VXU9 1444 aa33.38■■■□□ 2.93
CDX1-201ENST00000231656 ADGRL2O95490 1459 aa33.37■■■□□ 2.93
CDX1-201ENST00000231656 GCC2Q8IWJ2 1684 aa33.36■■■□□ 2.93
CDX1-201ENST00000231656 NCOA1Q15788 1441 aa33.34■■■□□ 2.93
CDX1-201ENST00000231656 TRAPPC8Q9Y2L5 1435 aa33.34■■■□□ 2.93
CDX1-201ENST00000231656 NEO1Q92859 1461 aa33.33■■■□□ 2.93
CDX1-201ENST00000231656 SCAPERQ9BY12 1400 aa33.33■■■□□ 2.93
CDX1-201ENST00000231656 TSPOAP1O95153 1857 aa33.32■■■□□ 2.92
CDX1-201ENST00000231656 MAST1Q9Y2H9 1570 aa33.31■■■□□ 2.92
CDX1-201ENST00000231656 ANKRD30AQ9BXX3 1397 aa33.3■■■□□ 2.92
CDX1-201ENST00000231656 PPRC1Q5VV67 1664 aaKnown RBP33.28■■■□□ 2.92
CDX1-201ENST00000231656 AFAP1Q8N556 730 aa33.25■■■□□ 2.91
CDX1-201ENST00000231656 KDM6BO15054 1643 aa33.22■■■□□ 2.91
CDX1-201ENST00000231656 TEX14Q8IWB6 1497 aa33.21■■■□□ 2.91
CDX1-201ENST00000231656 ZNF518AQ6AHZ1 1483 aa33.19■■■□□ 2.9
CDX1-201ENST00000231656 SPAG9O60271 1321 aaKnown RBP33.18■■■□□ 2.9
CDX1-201ENST00000231656 PLXNC1O60486 1568 aa33.18■■■□□ 2.9
CDX1-201ENST00000231656 POGZQ7Z3K3 1410 aa33.18■■■□□ 2.9
CDX1-201ENST00000231656 KIF15Q9NS87 1388 aa33.17■■■□□ 2.9
CDX1-201ENST00000231656 RTEL1-TNFRSF6BF6WH68 1400 aa33.16■■■□□ 2.9
CDX1-201ENST00000231656 ZFYVE16Q7Z3T8 1539 aa33.15■■■□□ 2.9
CDX1-201ENST00000231656 INO80Q9ULG1 1556 aaPredicted RBP33.14■■■□□ 2.9
CDX1-201ENST00000231656 DENND4BO75064 1496 aaPredicted RBP33.13■■■□□ 2.89
CDX1-201ENST00000231656 KDM5CP41229 1560 aa33.12■■■□□ 2.89
CDX1-201ENST00000231656 ANKRD50Q9ULJ7 1429 aa33.12■■■□□ 2.89
CDX1-201ENST00000231656 ATP7AQ04656 1500 aa33.11■■■□□ 2.89
CDX1-201ENST00000231656 RICTORQ6R327 1708 aa33.09■■■□□ 2.89
CDX1-201ENST00000231656 RAPGEF3O95398 923 aa33.07■■■□□ 2.88
CDX1-201ENST00000231656 KIDINS220Q9ULH0 1771 aa33.06■■■□□ 2.88
CDX1-201ENST00000231656 DUOX2Q9NRD8 1548 aa33.04■■■□□ 2.88
CDX1-201ENST00000231656 TRHP20396 242 aaPredicted RBP33.03■■■□□ 2.88
CDX1-201ENST00000231656 MLH3Q9UHC1 1453 aa33.03■■■□□ 2.88
CDX1-201ENST00000231656 HECW2Q9P2P5 1572 aa33.02■■■□□ 2.88
CDX1-201ENST00000231656 MYT1LQ9UL68 1186 aa33.02■■■□□ 2.88
CDX1-201ENST00000231656 ACIN1Q9UKV3 1341 aaKnown RBP33.02■■■□□ 2.88
CDX1-201ENST00000231656 FRMPD1Q5SYB0 1578 aa33.01■■■□□ 2.87
CDX1-201ENST00000231656 TRIM52Q96A61 297 aa32.99■■■□□ 2.87
CDX1-201ENST00000231656 ERBINQ96RT1 1412 aa32.96■■■□□ 2.87
CDX1-201ENST00000231656 ZNF316A6NFI3 1004 aaPredicted RBP32.96■■■□□ 2.87
CDX1-201ENST00000231656 ZMYM4Q5VZL5 1548 aa32.92■■■□□ 2.86
CDX1-201ENST00000231656 COL17A1Q9UMD9 1497 aaPredicted RBP32.91■■■□□ 2.86
CDX1-201ENST00000231656 ABCA6Q8N139 1617 aa32.9■■■□□ 2.86
CDX1-201ENST00000231656 DHX29Q7Z478 1369 aaKnown RBP32.88■■■□□ 2.85
CDX1-201ENST00000231656 MPHOSPH9Q99550 1183 aa32.86■■■□□ 2.85
CDX1-201ENST00000231656 UNC13BO14795 1591 aa32.85■■■□□ 2.85
CDX1-201ENST00000231656 DIP2CQ9Y2E4 1556 aa32.84■■■□□ 2.85
CDX1-201ENST00000231656 A2MP01023 1474 aa32.84■■■□□ 2.85
CDX1-201ENST00000231656 PZPP20742 1482 aa32.84■■■□□ 2.85
CDX1-201ENST00000231656 KDM5DQ9BY66 1539 aa32.83■■■□□ 2.85
CDX1-201ENST00000231656 NUP155O75694 1391 aa32.83■■■□□ 2.85
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms