RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 PALM3A6NDB9 673 aaPredicted RBP3.91□□□□□ -1.78
SCN1A-221ENST00000641996 EIF3FO00303 357 aaPredicted RBP3.91□□□□□ -1.78
SCN1A-221ENST00000641996 ORC4O43929 436 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 ST18O60284 1047 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 NUP62P37198 522 aaPredicted RBP3.91□□□□□ -1.78
SCN1A-221ENST00000641996 MTTPP55157 894 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 KRT83P78385 493 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 SPIRE1Q08AE8 756 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 RCN2Q14257 317 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 BICDL1Q6ZP65 573 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 HDXQ7Z353 690 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 CHERPQ8IWX8 916 aaKnown RBP3.91□□□□□ -1.78
SCN1A-221ENST00000641996 ZNF496Q96IT1 587 aaPredicted RBP3.91□□□□□ -1.78
SCN1A-221ENST00000641996 PTBP2Q9UKA9 531 aaKnown RBP3.91□□□□□ -1.78
SCN1A-221ENST00000641996 EIF4E1BA6NMX2 242 aaKnown RBP3.91□□□□□ -1.78
SCN1A-221ENST00000641996 PDHA2P29803 388 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 CEP85LQ5SZL2 805 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 DRAXINQ8NBI3 349 aaPredicted RBP3.91□□□□□ -1.78
SCN1A-221ENST00000641996 AGR3Q8TD06 166 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 CLIP3Q96DZ5 547 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 BORCS6Q96GS4 357 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 SEC63Q9UGP8 760 aaKnown RBP3.91□□□□□ -1.78
SCN1A-221ENST00000641996 CGNL1Q0VF96 1302 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 LRRC10BA6NIK2 292 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 PSMD14O00487 310 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 SMAD9O15198 467 aaKnown RBP3.91□□□□□ -1.78
SCN1A-221ENST00000641996 ZNF3P17036 446 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 IFNAR2P48551 515 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 CNNM4Q6P4Q7 775 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 LTV1Q96GA3 475 aaPredicted RBP3.91□□□□□ -1.78
SCN1A-221ENST00000641996 SIN3AQ96ST3 1273 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 UPF3BQ9BZI7 483 aaKnown RBP3.91□□□□□ -1.78
SCN1A-221ENST00000641996 DNAAF2Q9NVR5 837 aaKnown RBP3.91□□□□□ -1.78
SCN1A-221ENST00000641996 LOXHD1Q8IVV2 1947 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 TRIM43BA6NCK2 446 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 SCGB1D2O95969 90 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 PAHP00439 452 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 MX2P20592 715 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 CNTFP26441 200 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 PTK2Q05397 1052 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 ACTN3Q08043 901 aaPredicted RBP3.91□□□□□ -1.78
SCN1A-221ENST00000641996 UGP2Q16851 508 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 VWA3BQ502W6 1294 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 VPS53Q5VIR6 699 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 TTLL7Q6ZT98 887 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 KRT74Q7RTS7 529 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 CATIPQ7Z7H3 387 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 RASEFQ8IZ41 740 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 ZNF566Q969W8 418 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 COG4Q9H9E3 785 aa3.91□□□□□ -1.78
SCN1A-221ENST00000641996 EME2A4GXA9 379 aaPredicted RBP3.9□□□□□ -1.78
SCN1A-221ENST00000641996 SMIM23A6NLE4 172 aa3.9□□□□□ -1.78
SCN1A-221ENST00000641996 SYNCRIPO60506 623 aaKnown RBP3.9□□□□□ -1.78
SCN1A-221ENST00000641996 DDX58O95786 925 aaKnown RBP3.9□□□□□ -1.78
SCN1A-221ENST00000641996 SFMBT2Q5VUG0 894 aa3.9□□□□□ -1.78
SCN1A-221ENST00000641996 TUBA3EQ6PEY2 450 aa3.9□□□□□ -1.78
SCN1A-221ENST00000641996 KDELC2Q7Z4H8 507 aa3.9□□□□□ -1.78
SCN1A-221ENST00000641996 TBCBQ99426 244 aa3.9□□□□□ -1.78
SCN1A-221ENST00000641996 STX8Q9UNK0 236 aa3.9□□□□□ -1.78
SCN1A-221ENST00000641996 EIF3CLB5ME19 914 aaKnown RBP3.9□□□□□ -1.78
SCN1A-221ENST00000641996 TMCC1O94876 653 aa3.9□□□□□ -1.78
SCN1A-221ENST00000641996 ANKRD13DQ6ZTN6 518 aa3.9□□□□□ -1.78
SCN1A-221ENST00000641996 EIF3CQ99613 913 aaKnown RBP3.9□□□□□ -1.78
SCN1A-221ENST00000641996 CNPY3Q9BT09 278 aa3.9□□□□□ -1.78
SCN1A-221ENST00000641996 PNMA3Q9UL41 463 aa3.9□□□□□ -1.78
SCN1A-221ENST00000641996 SLU7O95391 586 aaKnown RBP3.9□□□□□ -1.78
SCN1A-221ENST00000641996 PCNAP12004 261 aa3.9□□□□□ -1.78
SCN1A-221ENST00000641996 ICA1Q05084 483 aa3.9□□□□□ -1.78
SCN1A-221ENST00000641996 SMUG1Q53HV7 270 aa3.9□□□□□ -1.78
SCN1A-221ENST00000641996 TJAP1Q5JTD0 557 aa3.9□□□□□ -1.78
SCN1A-221ENST00000641996 TMEM53Q6P2H8 277 aa3.9□□□□□ -1.78
SCN1A-221ENST00000641996 FOXP3Q9BZS1 431 aa3.9□□□□□ -1.78
SCN1A-221ENST00000641996 CHMP2BQ9UQN3 213 aa3.9□□□□□ -1.78
SCN1A-221ENST00000641996 ATP5OP48047 213 aa3.9□□□□□ -1.78
SCN1A-221ENST00000641996 CRTC2Q53ET0 693 aaPredicted RBP3.9□□□□□ -1.78
SCN1A-221ENST00000641996 PPP4R3AQ6IN85 833 aa3.9□□□□□ -1.78
SCN1A-221ENST00000641996 LRRC49Q8IUZ0 686 aa3.9□□□□□ -1.78
SCN1A-221ENST00000641996 ZNF180Q9UJW8 692 aa3.9□□□□□ -1.78
SCN1A-221ENST00000641996 WDR37Q9Y2I8 494 aa3.9□□□□□ -1.78
SCN1A-221ENST00000641996 BRD4O60885 1362 aaPredicted RBP3.9□□□□□ -1.78
SCN1A-221ENST00000641996 A0A1W2PRG0 241 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 TMEM11P17152 192 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 MCM4P33991 863 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 USP37Q86T82 979 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 TADA2BQ86TJ2 420 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 C12orf50Q8NA57 414 aaPredicted RBP3.9□□□□□ -1.79
SCN1A-221ENST00000641996 HAUS1Q96CS2 278 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 TDRD1Q9BXT4 1180 aaKnown RBP3.9□□□□□ -1.79
SCN1A-221ENST00000641996 CD2APQ9Y5K6 639 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 SOS1Q07889 1333 aaPredicted RBP3.9□□□□□ -1.79
SCN1A-221ENST00000641996 CYP1A2P05177 515 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 CLTBP09497 229 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 GNALP38405 381 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 CCR3P51677 355 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 PPP4CP60510 307 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 MDM2Q00987 491 aaPredicted RBP3.9□□□□□ -1.79
SCN1A-221ENST00000641996 PACS2Q86VP3 889 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 REXO1Q8N1G1 1221 aaKnown RBP3.9□□□□□ -1.79
SCN1A-221ENST00000641996 PJA1Q8NG27 643 aa3.9□□□□□ -1.79
SCN1A-221ENST00000641996 FGD4Q96M96 766 aa3.9□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms