RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 CWF19L2Q2TBE0 894 aaKnown RBP7.54□□□□□ -1.2
SCN1A-213ENST00000636759 GALNT17Q6IS24 598 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 TMEM154Q6P9G4 183 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 CYP26C1Q6V0L0 522 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 KCNV2Q8TDN2 545 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 FAM81BQ96LP2 452 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 IWS1Q96ST2 819 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 NDNQ99608 321 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 DDX21Q9NR30 783 aaKnown RBP eCLIP7.54□□□□□ -1.2
SCN1A-213ENST00000636759 PCMTD2Q9NV79 361 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 PANK4Q9NVE7 773 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 SLAIN2Q9P270 581 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 PHF24Q9UPV7 400 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 FOXP2O15409 715 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 PFKFB1P16118 471 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 CYP11B2P19099 503 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 VCAM1P19320 739 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 GBP1P32455 592 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 ABL2P42684 1182 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 KRT32Q14532 448 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 LBRQ14739 615 aaKnown RBP7.54□□□□□ -1.2
SCN1A-213ENST00000636759 RABL6Q3YEC7 729 aaPredicted RBP7.54□□□□□ -1.2
SCN1A-213ENST00000636759 APBB1IPQ7Z5R6 666 aaPredicted RBP7.54□□□□□ -1.2
SCN1A-213ENST00000636759 ELOA2Q8IYF1 753 aaPredicted RBP7.54□□□□□ -1.2
SCN1A-213ENST00000636759 TSEN2Q8NCE0 465 aaKnown RBP7.54□□□□□ -1.2
SCN1A-213ENST00000636759 LZICQ8WZA0 190 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 RAPGEF4Q8WZA2 1011 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 PPP1R12CQ9BZL4 782 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 HAUS4Q9H6D7 363 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 WDR37Q9Y2I8 494 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 MAP3K2Q9Y2U5 619 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 ZNF335Q9H4Z2 1342 aaPredicted RBP7.54□□□□□ -1.2
SCN1A-213ENST00000636759 TIAM2Q8IVF5 1701 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 DLEC1Q9Y238 1755 aa7.54□□□□□ -1.2
SCN1A-213ENST00000636759 HIP1O00291 1037 aa7.53□□□□□ -1.2
SCN1A-213ENST00000636759 YEATS4O95619 227 aa7.53□□□□□ -1.2
SCN1A-213ENST00000636759 CCDC122Q5T0U0 273 aa7.53□□□□□ -1.2
SCN1A-213ENST00000636759 STOX1Q6ZVD7 989 aa7.53□□□□□ -1.2
SCN1A-213ENST00000636759 CCT6BQ92526 530 aa7.53□□□□□ -1.2
SCN1A-213ENST00000636759 IFT74Q96LB3 600 aa7.53□□□□□ -1.2
SCN1A-213ENST00000636759 GBP5Q96PP8 586 aa7.53□□□□□ -1.2
SCN1A-213ENST00000636759 LLPHQ9BRT6 129 aaKnown RBP7.53□□□□□ -1.2
SCN1A-213ENST00000636759 DMAP1Q9NPF5 467 aaPredicted RBP7.53□□□□□ -1.2
SCN1A-213ENST00000636759 DLGAP2Q9P1A6 1054 aa7.53□□□□□ -1.2
SCN1A-213ENST00000636759 SCOCQ9UIL1 159 aa7.53□□□□□ -1.2
SCN1A-213ENST00000636759 BZW2Q9Y6E2 419 aaKnown RBP7.53□□□□□ -1.2
SCN1A-213ENST00000636759 GCOM1H8Y6P7 765 aaPredicted RBP7.53□□□□□ -1.2
SCN1A-213ENST00000636759 CETN3O15182 167 aa7.53□□□□□ -1.2
SCN1A-213ENST00000636759 MFAP3LO75121 409 aa7.53□□□□□ -1.2
SCN1A-213ENST00000636759 MBD4O95243 580 aa7.53□□□□□ -1.2
SCN1A-213ENST00000636759 ATP1A1P05023 1023 aaKnown RBP7.53□□□□□ -1.2
SCN1A-213ENST00000636759 MYZAPP0CAP1 466 aa7.53□□□□□ -1.2
SCN1A-213ENST00000636759 SH3BGRP55822 239 aaPredicted RBP7.53□□□□□ -1.2
SCN1A-213ENST00000636759 OLFML1Q6UWY5 402 aa7.53□□□□□ -1.2
SCN1A-213ENST00000636759 LINC00301Q8NCQ3 95 aa7.53□□□□□ -1.2
SCN1A-213ENST00000636759 KIFAP3Q92845 792 aa7.53□□□□□ -1.2
SCN1A-213ENST00000636759 NUP88Q99567 741 aaPredicted RBP7.53□□□□□ -1.2
SCN1A-213ENST00000636759 UBA5Q9GZZ9 404 aa7.53□□□□□ -1.2
SCN1A-213ENST00000636759 NDST4Q9H3R1 872 aa7.53□□□□□ -1.2
SCN1A-213ENST00000636759 ROBO1Q9Y6N7 1651 aa7.53□□□□□ -1.2
SCN1A-213ENST00000636759 PTPDC1A2A3K4 754 aa7.53□□□□□ -1.2
SCN1A-213ENST00000636759 PSMD14O00487 310 aa7.53□□□□□ -1.2
SCN1A-213ENST00000636759 PPIP5K2O43314 1243 aa7.53□□□□□ -1.2
SCN1A-213ENST00000636759 KRT86O43790 486 aa7.53□□□□□ -1.2
SCN1A-213ENST00000636759 NAT1P18440 290 aa7.53□□□□□ -1.2
SCN1A-213ENST00000636759 TMEM62Q0P6H9 643 aa7.53□□□□□ -1.2
SCN1A-213ENST00000636759 PNOCQ13519 176 aa7.53□□□□□ -1.2
SCN1A-213ENST00000636759 ZNF268Q14587 947 aaPredicted RBP7.53□□□□□ -1.2
SCN1A-213ENST00000636759 SLC4A8Q2Y0W8 1093 aa7.53□□□□□ -1.2
SCN1A-213ENST00000636759 FAM133BQ5BKY9 247 aaKnown RBP7.53□□□□□ -1.2
SCN1A-213ENST00000636759 RASIP1Q5U651 963 aa7.53□□□□□ -1.2
SCN1A-213ENST00000636759 CCDC102BQ68D86 513 aa7.53□□□□□ -1.2
SCN1A-213ENST00000636759 ERICH1Q86X53 443 aa7.53□□□□□ -1.2
SCN1A-213ENST00000636759 PHC3Q8NDX5 983 aa7.53□□□□□ -1.2
SCN1A-213ENST00000636759 TRAPPC9Q96Q05 1148 aa7.53□□□□□ -1.2
SCN1A-213ENST00000636759 NLRP2Q9NX02 1062 aa7.53□□□□□ -1.2
SCN1A-213ENST00000636759 HMG20BQ9P0W2 317 aa7.53□□□□□ -1.2
SCN1A-213ENST00000636759 SAMD15Q9P1V8 674 aa7.53□□□□□ -1.2
SCN1A-213ENST00000636759 TUBE1Q9UJT0 475 aa7.53□□□□□ -1.2
SCN1A-213ENST00000636759 MAPK8IP1Q9UQF2 711 aa7.53□□□□□ -1.2
SCN1A-213ENST00000636759 STK38LQ9Y2H1 464 aa7.53□□□□□ -1.2
SCN1A-213ENST00000636759 ZNF510Q9Y2H8 683 aa7.53□□□□□ -1.2
SCN1A-213ENST00000636759 NRAPQ86VF7 1730 aa7.52□□□□□ -1.21
SCN1A-213ENST00000636759 BACH1O14867 736 aa7.52□□□□□ -1.21
SCN1A-213ENST00000636759 TRAPPC3O43617 180 aa7.52□□□□□ -1.21
SCN1A-213ENST00000636759 LGR5O75473 907 aa7.52□□□□□ -1.21
SCN1A-213ENST00000636759 IDEP14735 1019 aa7.52□□□□□ -1.21
SCN1A-213ENST00000636759 CMA1P23946 247 aa7.52□□□□□ -1.21
SCN1A-213ENST00000636759 CASP14P31944 242 aa7.52□□□□□ -1.21
SCN1A-213ENST00000636759 STAT6P42226 847 aa7.52□□□□□ -1.21
SCN1A-213ENST00000636759 PAFAH1B1P43034 410 aa7.52□□□□□ -1.21
SCN1A-213ENST00000636759 ADAM9Q13443 819 aa7.52□□□□□ -1.21
SCN1A-213ENST00000636759 CHRNA2Q15822 529 aa7.52□□□□□ -1.21
SCN1A-213ENST00000636759 C8orf74Q6P047 294 aa7.52□□□□□ -1.21
SCN1A-213ENST00000636759 GIGYF2Q6Y7W6 1299 aaKnown RBP7.52□□□□□ -1.21
SCN1A-213ENST00000636759 MAEAQ7L5Y9 396 aa7.52□□□□□ -1.21
SCN1A-213ENST00000636759 HOOK3Q86VS8 718 aa7.52□□□□□ -1.21
SCN1A-213ENST00000636759 IFT20Q8IY31 132 aa7.52□□□□□ -1.21
SCN1A-213ENST00000636759 SLX1AQ9BQ83 275 aa7.52□□□□□ -1.21
SCN1A-213ENST00000636759 TAF1DQ9H5J8 278 aaPredicted RBP7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms