RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 NOM1Q5C9Z4 860 aaKnown RBP16.14■□□□□ 0.17
CLN3-242ENST00000635958 PIK3AP1Q6ZUJ8 805 aa16.14■□□□□ 0.17
CLN3-242ENST00000635958 ANKRD23Q86SG2 305 aa16.14■□□□□ 0.17
CLN3-242ENST00000635958 SAMD3Q8N6K7 520 aa16.14■□□□□ 0.17
CLN3-242ENST00000635958 RASGRP4Q8TDF6 673 aa16.14■□□□□ 0.17
CLN3-242ENST00000635958 MAF1Q9H063 256 aa16.14■□□□□ 0.17
CLN3-242ENST00000635958 BIN2Q9UBW5 565 aaPredicted RBP16.14■□□□□ 0.17
CLN3-242ENST00000635958 CTDP1Q9Y5B0 961 aaPredicted RBP16.14■□□□□ 0.17
CLN3-242ENST00000635958 CCDC194A0A1B0GVG4 234 aa16.13■□□□□ 0.17
CLN3-242ENST00000635958 FAM205CA6NFA0 338 aa16.13■□□□□ 0.17
CLN3-242ENST00000635958 HERVK_113P62684 666 aa16.13■□□□□ 0.17
CLN3-242ENST00000635958 HSP90AA2PQ14568 343 aaPredicted RBP16.13■□□□□ 0.17
CLN3-242ENST00000635958 TKFCQ3LXA3 575 aa16.13■□□□□ 0.17
CLN3-242ENST00000635958 CPXCR1Q8N123 301 aa16.13■□□□□ 0.17
CLN3-242ENST00000635958 GPT2Q8TD30 523 aa16.13■□□□□ 0.17
CLN3-242ENST00000635958 CLEC4DQ8WXI8 215 aa16.13■□□□□ 0.17
CLN3-242ENST00000635958 RBSNQ9H1K0 784 aa16.13■□□□□ 0.17
CLN3-242ENST00000635958 ELP1O95163 1332 aa16.13■□□□□ 0.17
CLN3-242ENST00000635958 BTBD19C9JJ37 291 aa16.12■□□□□ 0.17
CLN3-242ENST00000635958 YEATS4O95619 227 aa16.12■□□□□ 0.17
CLN3-242ENST00000635958 FOSP01100 380 aaPredicted RBP16.12■□□□□ 0.17
CLN3-242ENST00000635958 SLC10A3P09131 477 aa16.12■□□□□ 0.17
CLN3-242ENST00000635958 TAL1P17542 331 aaPredicted RBP16.12■□□□□ 0.17
CLN3-242ENST00000635958 AP3B2Q13367 1082 aa16.12■□□□□ 0.17
CLN3-242ENST00000635958 NONOQ15233 471 aaKnown RBP eCLIP16.12■□□□□ 0.17
CLN3-242ENST00000635958 ANO1Q5XXA6 986 aa16.12■□□□□ 0.17
CLN3-242ENST00000635958 USP17L6PQ6QN14 398 aa16.12■□□□□ 0.17
CLN3-242ENST00000635958 LEO1Q8WVC0 666 aaPredicted RBP16.12■□□□□ 0.17
CLN3-242ENST00000635958 TEX13BQ9BXU2 312 aa16.12■□□□□ 0.17
CLN3-242ENST00000635958 MAP3K20Q9NYL2 800 aaKnown RBP16.12■□□□□ 0.17
CLN3-242ENST00000635958 MORC2Q9Y6X9 1032 aaPredicted RBP16.12■□□□□ 0.17
CLN3-242ENST00000635958 STAT3P40763 770 aa16.12■□□□□ 0.17
CLN3-242ENST00000635958 UBE2SQ16763 222 aa16.12■□□□□ 0.17
CLN3-242ENST00000635958 JAKMIP3Q5VZ66 844 aa16.12■□□□□ 0.17
CLN3-242ENST00000635958 MCF2L2Q86YR7 1114 aa16.12■□□□□ 0.17
CLN3-242ENST00000635958 LINC00301Q8NCQ3 95 aa16.12■□□□□ 0.17
CLN3-242ENST00000635958 CCDC102AQ96A19 550 aa16.12■□□□□ 0.17
CLN3-242ENST00000635958 FTOQ9C0B1 505 aaKnown RBP eCLIP16.12■□□□□ 0.17
CLN3-242ENST00000635958 TMEM260Q9NX78 707 aa16.12■□□□□ 0.17
CLN3-242ENST00000635958 PNMA3Q9UL41 463 aa16.12■□□□□ 0.17
CLN3-242ENST00000635958 CLIC4Q9Y696 253 aa16.12■□□□□ 0.17
CLN3-242ENST00000635958 COL11A1P12107 1806 aaPredicted RBP16.12■□□□□ 0.17
CLN3-242ENST00000635958 A0A0G2JMZ2 1700 aa16.12■□□□□ 0.17
CLN3-242ENST00000635958 MANSC4A6NHS7 340 aaPredicted RBP16.11■□□□□ 0.17
CLN3-242ENST00000635958 ALAS1P13196 640 aa16.11■□□□□ 0.17
CLN3-242ENST00000635958 HSD17B4P51659 736 aa16.11■□□□□ 0.17
CLN3-242ENST00000635958 MKRN3Q13064 507 aaKnown RBP16.11■□□□□ 0.17
CLN3-242ENST00000635958 SLC39A14Q15043 492 aa16.11■□□□□ 0.17
CLN3-242ENST00000635958 PTPAQ15257 358 aa16.11■□□□□ 0.17
CLN3-242ENST00000635958 GTF3C2Q8WUA4 911 aaPredicted RBP16.11■□□□□ 0.17
CLN3-242ENST00000635958 SPATA32Q96LK8 384 aa16.11■□□□□ 0.17
CLN3-242ENST00000635958 MAP7D2Q96T17 732 aa16.11■□□□□ 0.17
CLN3-242ENST00000635958 PTPN18Q99952 460 aa16.11■□□□□ 0.17
CLN3-242ENST00000635958 GDPD2Q9HCC8 539 aa16.11■□□□□ 0.17
CLN3-242ENST00000635958 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.11■□□□□ 0.17
CLN3-242ENST00000635958 RABGAP1Q9Y3P9 1069 aa16.11■□□□□ 0.17
CLN3-242ENST00000635958 RIPK3Q9Y572 518 aa16.11■□□□□ 0.17
CLN3-242ENST00000635958 FAM155AB1AL88 458 aaPredicted RBP16.1■□□□□ 0.17
CLN3-242ENST00000635958 GCOM1H8Y6P7 765 aaPredicted RBP16.1■□□□□ 0.17
CLN3-242ENST00000635958 PDHXO00330 501 aa16.1■□□□□ 0.17
CLN3-242ENST00000635958 FIBPO43427 364 aa16.1■□□□□ 0.17
CLN3-242ENST00000635958 POLR2MP0CAP2 368 aa16.1■□□□□ 0.17
CLN3-242ENST00000635958 INHBEP58166 350 aa16.1■□□□□ 0.17
CLN3-242ENST00000635958 SF3A1Q15459 793 aaKnown RBP16.1■□□□□ 0.17
CLN3-242ENST00000635958 SNRNP48Q6IEG0 339 aaKnown RBP16.1■□□□□ 0.17
CLN3-242ENST00000635958 TBC1D5Q92609 795 aa16.1■□□□□ 0.17
CLN3-242ENST00000635958 TRERF1Q96PN7 1200 aa16.1■□□□□ 0.17
CLN3-242ENST00000635958 ZCCHC17Q9NP64 241 aaKnown RBP16.1■□□□□ 0.17
CLN3-242ENST00000635958 BTBD7Q9P203 1132 aa16.1■□□□□ 0.17
CLN3-242ENST00000635958 RBPJLQ9UBG7 517 aa16.1■□□□□ 0.17
CLN3-242ENST00000635958 PCDHB6Q9Y5E3 794 aa16.1■□□□□ 0.17
CLN3-242ENST00000635958 CNMDO75829 334 aa16.1■□□□□ 0.17
CLN3-242ENST00000635958 HTRA3P83110 453 aa16.1■□□□□ 0.17
CLN3-242ENST00000635958 CEBPZQ03701 1054 aaKnown RBP16.1■□□□□ 0.17
CLN3-242ENST00000635958 INF2Q27J81 1249 aa16.1■□□□□ 0.17
CLN3-242ENST00000635958 MUM1L1Q5H9M0 696 aa16.1■□□□□ 0.17
CLN3-242ENST00000635958 TTC38Q5R3I4 469 aa16.1■□□□□ 0.17
CLN3-242ENST00000635958 RIOX2Q8IUF8 465 aa16.1■□□□□ 0.17
CLN3-242ENST00000635958 TBCKQ8TEA7 893 aa16.1■□□□□ 0.17
CLN3-242ENST00000635958 CRYGNQ8WXF5 182 aa16.1■□□□□ 0.17
CLN3-242ENST00000635958 TSPY26PQ9H489 355 aa16.1■□□□□ 0.17
CLN3-242ENST00000635958 NFIBO00712 420 aa16.09■□□□□ 0.17
CLN3-242ENST00000635958 EDIL3O43854 480 aa16.09■□□□□ 0.17
CLN3-242ENST00000635958 BMP15O95972 392 aa16.09■□□□□ 0.17
CLN3-242ENST00000635958 CFBP00751 764 aa16.09■□□□□ 0.17
CLN3-242ENST00000635958 ORC2Q13416 577 aaPredicted RBP16.09■□□□□ 0.17
CLN3-242ENST00000635958 NEK8Q86SG6 692 aa16.09■□□□□ 0.17
CLN3-242ENST00000635958 CHST13Q8NET6 341 aa16.09■□□□□ 0.17
CLN3-242ENST00000635958 KCNG4Q8TDN1 519 aa16.09■□□□□ 0.17
CLN3-242ENST00000635958 SPATC1LQ9H0A9 340 aa16.09■□□□□ 0.17
CLN3-242ENST00000635958 RNF146Q9NTX7 359 aa16.09■□□□□ 0.17
CLN3-242ENST00000635958 ABT1Q9ULW3 272 aaKnown RBP16.09■□□□□ 0.17
CLN3-242ENST00000635958 CEP131Q9UPN4 1083 aa16.09■□□□□ 0.17
CLN3-242ENST00000635958 ZKSCAN5Q9Y2L8 839 aa16.09■□□□□ 0.17
CLN3-242ENST00000635958 WNT7AO00755 349 aa16.08■□□□□ 0.17
CLN3-242ENST00000635958 PPP6R2O75170 966 aa16.08■□□□□ 0.17
CLN3-242ENST00000635958 USP11P51784 963 aa16.08■□□□□ 0.17
CLN3-242ENST00000635958 DNAJC5GQ8N7S2 189 aa16.08■□□□□ 0.17
CLN3-242ENST00000635958 ANO3Q9BYT9 981 aa16.08■□□□□ 0.17
CLN3-242ENST00000635958 TMEM63CQ9P1W3 806 aa16.08■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms