RNA–Protein interactions for RNA: ENST00000621245.4

CPNE3-210, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 581 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-210ENST00000621245 PDHBP11177 359 aa13.5□□□□□ -0.25
CPNE3-210ENST00000621245 SDSP20132 328 aa13.5□□□□□ -0.25
CPNE3-210ENST00000621245 CDK7P50613 346 aa13.5□□□□□ -0.25
CPNE3-210ENST00000621245 NUCB1Q02818 461 aa13.5□□□□□ -0.25
CPNE3-210ENST00000621245 SYDE2Q5VT97 1194 aa13.5□□□□□ -0.25
CPNE3-210ENST00000621245 FAM109BQ6ICB4 259 aaPredicted RBP13.5□□□□□ -0.25
CPNE3-210ENST00000621245 TAPT1Q6NXT6 567 aa13.5□□□□□ -0.25
CPNE3-210ENST00000621245 NSMFQ6X4W1 530 aa13.5□□□□□ -0.25
CPNE3-210ENST00000621245 ANKRD33Q7Z3H0 272 aa13.5□□□□□ -0.25
CPNE3-210ENST00000621245 LARP6Q9BRS8 491 aaKnown RBP13.5□□□□□ -0.25
CPNE3-210ENST00000621245 TTYH1Q9H313 450 aaPredicted RBP13.5□□□□□ -0.25
CPNE3-210ENST00000621245 TMEM39AQ9NV64 488 aa13.5□□□□□ -0.25
CPNE3-210ENST00000621245 GNEQ9Y223 722 aaKnown RBP13.5□□□□□ -0.25
CPNE3-210ENST00000621245 TANC1Q9C0D5 1861 aa13.49□□□□□ -0.25
CPNE3-210ENST00000621245 GRIN2DO15399 1336 aa13.49□□□□□ -0.25
CPNE3-210ENST00000621245 MOXD2PA6NHM9 499 aa13.49□□□□□ -0.25
CPNE3-210ENST00000621245 ICAM1P05362 532 aa13.49□□□□□ -0.25
CPNE3-210ENST00000621245 FDX1P10109 184 aa13.49□□□□□ -0.25
CPNE3-210ENST00000621245 TOP1P11387 765 aaKnown RBP13.49□□□□□ -0.25
CPNE3-210ENST00000621245 CD44P16070 742 aaKnown RBP13.49□□□□□ -0.25
CPNE3-210ENST00000621245 SMPD1P17405 629 aa13.49□□□□□ -0.25
CPNE3-210ENST00000621245 PDE4AP27815 886 aa13.49□□□□□ -0.25
CPNE3-210ENST00000621245 GNASQ5JWF2 1037 aa13.49□□□□□ -0.25
CPNE3-210ENST00000621245 CXCL17Q6UXB2 119 aa13.49□□□□□ -0.25
CPNE3-210ENST00000621245 BTNL9Q6UXG8 535 aa13.49□□□□□ -0.25
CPNE3-210ENST00000621245 CLEC4DQ8WXI8 215 aa13.49□□□□□ -0.25
CPNE3-210ENST00000621245 SCN10AQ9Y5Y9 1956 aa13.49□□□□□ -0.25
CPNE3-210ENST00000621245 UMODL1Q5DID0 1318 aa13.48□□□□□ -0.25
CPNE3-210ENST00000621245 GOLGA8HP0CJ92 632 aa13.48□□□□□ -0.25
CPNE3-210ENST00000621245 SNHG28P0DPA3 235 aa13.48□□□□□ -0.25
CPNE3-210ENST00000621245 RAG1P15918 1043 aa13.48□□□□□ -0.25
CPNE3-210ENST00000621245 NKX3-2P78367 333 aa13.48□□□□□ -0.25
CPNE3-210ENST00000621245 TNFAIP2Q03169 654 aa13.48□□□□□ -0.25
CPNE3-210ENST00000621245 ZNF543Q08ER8 600 aa13.48□□□□□ -0.25
CPNE3-210ENST00000621245 BAATQ14032 418 aaPredicted RBP13.48□□□□□ -0.25
CPNE3-210ENST00000621245 MFSD10Q14728 455 aa13.48□□□□□ -0.25
CPNE3-210ENST00000621245 TKFCQ3LXA3 575 aa13.48□□□□□ -0.25
CPNE3-210ENST00000621245 AKNAD1Q5T1N1 836 aa13.48□□□□□ -0.25
CPNE3-210ENST00000621245 CWC27Q6UX04 472 aaKnown RBP13.48□□□□□ -0.25
CPNE3-210ENST00000621245 C16orf59Q7L2K0 433 aa13.48□□□□□ -0.25
CPNE3-210ENST00000621245 TLK2Q86UE8 772 aa13.48□□□□□ -0.25
CPNE3-210ENST00000621245 FAM126BQ8IXS8 530 aa13.48□□□□□ -0.25
CPNE3-210ENST00000621245 PPP1R13LQ8WUF5 828 aa13.48□□□□□ -0.25
CPNE3-210ENST00000621245 TCP11L1Q9NUJ3 509 aa13.48□□□□□ -0.25
CPNE3-210ENST00000621245 MYH7BA7E2Y1 1941 aa13.48□□□□□ -0.25
CPNE3-210ENST00000621245 PTPRSQ13332 1948 aa13.48□□□□□ -0.25
CPNE3-210ENST00000621245 MYO9BQ13459 2157 aa13.48□□□□□ -0.25
CPNE3-210ENST00000621245 BAZ2BQ9UIF8 2168 aaKnown RBP13.48□□□□□ -0.25
CPNE3-210ENST00000621245 PSMC6P62333 389 aa13.47□□□□□ -0.25
CPNE3-210ENST00000621245 FPGSQ05932 587 aa13.47□□□□□ -0.25
CPNE3-210ENST00000621245 NUP133Q8WUM0 1156 aa13.47□□□□□ -0.25
CPNE3-210ENST00000621245 RNPC3Q96LT9 517 aaKnown RBP13.47□□□□□ -0.25
CPNE3-210ENST00000621245 GLT1D1Q96MS3 346 aa13.47□□□□□ -0.25
CPNE3-210ENST00000621245 TOX2Q96NM4 488 aa13.47□□□□□ -0.25
CPNE3-210ENST00000621245 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.47□□□□□ -0.25
CPNE3-210ENST00000621245 PPP1R12CQ9BZL4 782 aa13.47□□□□□ -0.25
CPNE3-210ENST00000621245 OSBPL3Q9H4L5 887 aa13.47□□□□□ -0.25
CPNE3-210ENST00000621245 ELP1O95163 1332 aa13.46□□□□□ -0.25
CPNE3-210ENST00000621245 TRIP12Q14669 1992 aaPredicted RBP13.46□□□□□ -0.25
CPNE3-210ENST00000621245 A0A0U1RQG5 324 aaPredicted RBP13.46□□□□□ -0.25
CPNE3-210ENST00000621245 ARVCFO00192 962 aa13.46□□□□□ -0.25
CPNE3-210ENST00000621245 TIMP1P01033 207 aa13.46□□□□□ -0.25
CPNE3-210ENST00000621245 GSPT1P15170 499 aaKnown RBP13.46□□□□□ -0.25
CPNE3-210ENST00000621245 CALML3P27482 149 aa13.46□□□□□ -0.25
CPNE3-210ENST00000621245 ALDH5A1P51649 535 aaPredicted RBP13.46□□□□□ -0.25
CPNE3-210ENST00000621245 FSCN1Q16658 493 aaKnown RBP13.46□□□□□ -0.25
CPNE3-210ENST00000621245 PPP4R3BQ5MIZ7 849 aa13.46□□□□□ -0.25
CPNE3-210ENST00000621245 ZNF697Q5TEC3 545 aa13.46□□□□□ -0.25
CPNE3-210ENST00000621245 MFSD6Q6ZSS7 791 aa13.46□□□□□ -0.25
CPNE3-210ENST00000621245 NOL8Q76FK4 1167 aaKnown RBP13.46□□□□□ -0.25
CPNE3-210ENST00000621245 MORC4Q8TE76 937 aa13.46□□□□□ -0.25
CPNE3-210ENST00000621245 MYLIPQ8WY64 445 aa13.46□□□□□ -0.25
CPNE3-210ENST00000621245 CDX2Q99626 313 aaPredicted RBP13.46□□□□□ -0.25
CPNE3-210ENST00000621245 UBA5Q9GZZ9 404 aa13.46□□□□□ -0.25
CPNE3-210ENST00000621245 SEMA6BQ9H3T3 888 aa13.46□□□□□ -0.25
CPNE3-210ENST00000621245 RWDD1Q9H446 243 aaPredicted RBP13.46□□□□□ -0.25
CPNE3-210ENST00000621245 DOCK5Q9H7D0 1870 aa13.46□□□□□ -0.26
CPNE3-210ENST00000621245 TET1Q8NFU7 2136 aa13.45□□□□□ -0.26
CPNE3-210ENST00000621245 PTPDC1A2A3K4 754 aa13.45□□□□□ -0.26
CPNE3-210ENST00000621245 ASB14A6NK59 587 aa13.45□□□□□ -0.26
CPNE3-210ENST00000621245 GRXCR1A8MXD5 290 aa13.45□□□□□ -0.26
CPNE3-210ENST00000621245 DCDC2CA8MYV0 355 aa13.45□□□□□ -0.26
CPNE3-210ENST00000621245 B4E1Z4 1266 aa13.45□□□□□ -0.26
CPNE3-210ENST00000621245 DLL1O00548 723 aa13.45□□□□□ -0.26
CPNE3-210ENST00000621245 DYNC1LI2O43237 492 aaPredicted RBP13.45□□□□□ -0.26
CPNE3-210ENST00000621245 KDM4AO75164 1064 aa13.45□□□□□ -0.26
CPNE3-210ENST00000621245 CD4P01730 458 aa13.45□□□□□ -0.26
CPNE3-210ENST00000621245 ACRP10323 421 aa13.45□□□□□ -0.26
CPNE3-210ENST00000621245 CSF2RAP15509 400 aa13.45□□□□□ -0.26
CPNE3-210ENST00000621245 CYP2C18P33260 490 aa13.45□□□□□ -0.26
CPNE3-210ENST00000621245 IRX6P78412 446 aaPredicted RBP13.45□□□□□ -0.26
CPNE3-210ENST00000621245 SMAD3P84022 425 aaKnown RBP13.45□□□□□ -0.26
CPNE3-210ENST00000621245 SLC43A3Q8NBI5 491 aa13.45□□□□□ -0.26
CPNE3-210ENST00000621245 PCSK9Q8NBP7 692 aaKnown RBP13.45□□□□□ -0.26
CPNE3-210ENST00000621245 TBC1D5Q92609 795 aa13.45□□□□□ -0.26
CPNE3-210ENST00000621245 VTI1AQ96AJ9 217 aa13.45□□□□□ -0.26
CPNE3-210ENST00000621245 SPC25Q9HBM1 224 aa13.45□□□□□ -0.26
CPNE3-210ENST00000621245 PBX2P40425 430 aa13.44□□□□□ -0.26
CPNE3-210ENST00000621245 RPS6P62753 249 aaKnown RBP13.44□□□□□ -0.26
CPNE3-210ENST00000621245 USH1GQ495M9 461 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms