RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 WDR11Q9BZH6 1224 aa20.64■□□□□ 0.89
SHKBP1-223ENST00000600552 LCTP09848 1927 aa20.63■□□□□ 0.89
SHKBP1-223ENST00000600552 ZMYM6O95789 1325 aa20.63■□□□□ 0.89
SHKBP1-223ENST00000600552 KDM4AO75164 1064 aa20.63■□□□□ 0.89
SHKBP1-223ENST00000600552 CABYRO75952 493 aa20.63■□□□□ 0.89
SHKBP1-223ENST00000600552 FOSL2P15408 326 aa20.63■□□□□ 0.89
SHKBP1-223ENST00000600552 CCL23P55773 120 aa20.63■□□□□ 0.89
SHKBP1-223ENST00000600552 PDE4DQ08499 809 aa20.63■□□□□ 0.89
SHKBP1-223ENST00000600552 AAMPQ13685 434 aa20.63■□□□□ 0.89
SHKBP1-223ENST00000600552 TMEM240Q5SV17 173 aa20.63■□□□□ 0.89
SHKBP1-223ENST00000600552 ZNF365Q70YC5 407 aa20.63■□□□□ 0.89
SHKBP1-223ENST00000600552 C16orf59Q7L2K0 433 aa20.63■□□□□ 0.89
SHKBP1-223ENST00000600552 CLEC4DQ8WXI8 215 aa20.63■□□□□ 0.89
SHKBP1-223ENST00000600552 LRRC37A2A6NM11 1700 aa20.62■□□□□ 0.89
SHKBP1-223ENST00000600552 UMODL1Q5DID0 1318 aa20.62■□□□□ 0.89
SHKBP1-223ENST00000600552 DHX16O60231 1041 aaKnown RBP20.62■□□□□ 0.89
SHKBP1-223ENST00000600552 DNAJB2P25686 324 aa20.62■□□□□ 0.89
SHKBP1-223ENST00000600552 CHMP4BP1P59074 171 aa20.62■□□□□ 0.89
SHKBP1-223ENST00000600552 TICAM2Q86XR7 235 aa20.62■□□□□ 0.89
SHKBP1-223ENST00000600552 OR6J1Q8NGC5 347 aa20.62■□□□□ 0.89
SHKBP1-223ENST00000600552 PPP1R13LQ8WUF5 828 aa20.62■□□□□ 0.89
SHKBP1-223ENST00000600552 HIPK3Q9H422 1215 aa20.62■□□□□ 0.89
SHKBP1-223ENST00000600552 KAT14Q9H8E8 782 aa20.62■□□□□ 0.89
SHKBP1-223ENST00000600552 VAT1LQ9HCJ6 419 aa20.62■□□□□ 0.89
SHKBP1-223ENST00000600552 GRIN2DO15399 1336 aa20.61■□□□□ 0.89
SHKBP1-223ENST00000600552 B4E1Z4 1266 aa20.61■□□□□ 0.89
SHKBP1-223ENST00000600552 CD4P01730 458 aa20.61■□□□□ 0.89
SHKBP1-223ENST00000600552 PCP11498 1178 aaKnown RBP20.61■□□□□ 0.89
SHKBP1-223ENST00000600552 RPS6P62753 249 aaKnown RBP20.61■□□□□ 0.89
SHKBP1-223ENST00000600552 NKX3-2P78367 333 aa20.61■□□□□ 0.89
SHKBP1-223ENST00000600552 DUSP28Q4G0W2 176 aa20.61■□□□□ 0.89
SHKBP1-223ENST00000600552 A0A0C4DFX4 3053 aa20.6■□□□□ 0.89
SHKBP1-223ENST00000600552 PBX2P40425 430 aa20.6■□□□□ 0.89
SHKBP1-223ENST00000600552 GRIN2CQ14957 1233 aa20.6■□□□□ 0.89
SHKBP1-223ENST00000600552 IQCA1Q86XH1 822 aa20.6■□□□□ 0.89
SHKBP1-223ENST00000600552 PNMA1Q8ND90 353 aa20.6■□□□□ 0.89
SHKBP1-223ENST00000600552 MORC4Q8TE76 937 aa20.6■□□□□ 0.89
SHKBP1-223ENST00000600552 TIFAQ96CG3 184 aa20.6■□□□□ 0.89
SHKBP1-223ENST00000600552 MPHOSPH6Q99547 160 aaKnown RBP20.6■□□□□ 0.89
SHKBP1-223ENST00000600552 GPHNQ9NQX3 736 aaPredicted RBP20.6■□□□□ 0.89
SHKBP1-223ENST00000600552 Q9Y3F1 56 aa20.6■□□□□ 0.89
SHKBP1-223ENST00000600552 B4GALT4O60513 344 aa20.59■□□□□ 0.89
SHKBP1-223ENST00000600552 FAM47CQ5HY64 1035 aa20.59■□□□□ 0.89
SHKBP1-223ENST00000600552 GPATCH4Q5T3I0 446 aaKnown RBP20.59■□□□□ 0.89
SHKBP1-223ENST00000600552 PSRC1Q6PGN9 363 aaPredicted RBP20.59■□□□□ 0.89
SHKBP1-223ENST00000600552 SLC43A3Q8NBI5 491 aa20.59■□□□□ 0.89
SHKBP1-223ENST00000600552 COPS5Q92905 334 aa20.59■□□□□ 0.89
SHKBP1-223ENST00000600552 OSBPL3Q9H4L5 887 aa20.59■□□□□ 0.89
SHKBP1-223ENST00000600552 ZNF576Q9H609 170 aa20.59■□□□□ 0.89
SHKBP1-223ENST00000600552 IL23AQ9NPF7 189 aa20.59■□□□□ 0.89
SHKBP1-223ENST00000600552 PNMA2Q9UL42 364 aa20.59■□□□□ 0.89
SHKBP1-223ENST00000600552 MYO9BQ13459 2157 aa20.58■□□□□ 0.89
SHKBP1-223ENST00000600552 HIP1O00291 1037 aa20.58■□□□□ 0.89
SHKBP1-223ENST00000600552 FGBP02675 491 aa20.58■□□□□ 0.89
SHKBP1-223ENST00000600552 SNHG28P0DPA3 235 aa20.58■□□□□ 0.89
SHKBP1-223ENST00000600552 PPP2R5BQ15173 497 aa20.58■□□□□ 0.89
SHKBP1-223ENST00000600552 CDC37Q16543 378 aaPredicted RBP20.58■□□□□ 0.89
SHKBP1-223ENST00000600552 IMMTQ16891 758 aaKnown RBP20.58■□□□□ 0.89
SHKBP1-223ENST00000600552 OTOP2Q7RTS6 562 aa20.58■□□□□ 0.89
SHKBP1-223ENST00000600552 DGKHQ86XP1 1220 aa20.58■□□□□ 0.89
SHKBP1-223ENST00000600552 PPM1EQ8WY54 764 aa20.58■□□□□ 0.89
SHKBP1-223ENST00000600552 TBC1D5Q92609 795 aa20.58■□□□□ 0.89
SHKBP1-223ENST00000600552 ZSCAN10Q96SZ4 725 aaPredicted RBP20.58■□□□□ 0.89
SHKBP1-223ENST00000600552 TRMT13Q9NUP7 481 aaKnown RBP20.58■□□□□ 0.89
SHKBP1-223ENST00000600552 POLR3EQ9NVU0 708 aa20.58■□□□□ 0.89
SHKBP1-223ENST00000600552 CYP2C9P11712 490 aa20.57■□□□□ 0.88
SHKBP1-223ENST00000600552 CPT1AP50416 773 aa20.57■□□□□ 0.88
SHKBP1-223ENST00000600552 BRDTQ58F21 947 aaPredicted RBP20.57■□□□□ 0.88
SHKBP1-223ENST00000600552 CCDC178Q5BJE1 867 aa20.57■□□□□ 0.88
SHKBP1-223ENST00000600552 ADGRF4Q8IZF3 695 aa20.57■□□□□ 0.88
SHKBP1-223ENST00000600552 SCLYQ96I15 445 aa20.57■□□□□ 0.88
SHKBP1-223ENST00000600552 NOC4LQ9BVI4 516 aaKnown RBP20.57■□□□□ 0.88
SHKBP1-223ENST00000600552 COL25A1Q9BXS0 654 aaPredicted RBP20.57■□□□□ 0.88
SHKBP1-223ENST00000600552 ZSWIM5Q9P217 1185 aa20.57■□□□□ 0.88
SHKBP1-223ENST00000600552 WDR19Q8NEZ3 1342 aa20.56■□□□□ 0.88
SHKBP1-223ENST00000600552 B4DLN1 442 aa20.56■□□□□ 0.88
SHKBP1-223ENST00000600552 TXNP10599 105 aaKnown RBP20.56■□□□□ 0.88
SHKBP1-223ENST00000600552 MRPL12P52815 198 aaKnown RBP20.56■□□□□ 0.88
SHKBP1-223ENST00000600552 SEPT14Q6ZU15 432 aa20.56■□□□□ 0.88
SHKBP1-223ENST00000600552 UBAC1Q9BSL1 405 aa20.56■□□□□ 0.88
SHKBP1-223ENST00000600552 MTG1Q9BT17 334 aaPredicted RBP20.56■□□□□ 0.88
SHKBP1-223ENST00000600552 PBX4Q9BYU1 374 aa20.56■□□□□ 0.88
SHKBP1-223ENST00000600552 ALDH8A1Q9H2A2 487 aaPredicted RBP20.56■□□□□ 0.88
SHKBP1-223ENST00000600552 CXXC1Q9P0U4 656 aaPredicted RBP20.56■□□□□ 0.88
SHKBP1-223ENST00000600552 CTNNA3Q9UI47 895 aa20.56■□□□□ 0.88
SHKBP1-223ENST00000600552 CUL9Q8IWT3 2517 aa20.55■□□□□ 0.88
SHKBP1-223ENST00000600552 TMEM265A0A087WTH1 108 aa20.55■□□□□ 0.88
SHKBP1-223ENST00000600552 ZBBXA8MT70 800 aa20.55■□□□□ 0.88
SHKBP1-223ENST00000600552 PARP1P09874 1014 aaKnown RBP20.55■□□□□ 0.88
SHKBP1-223ENST00000600552 PURAQ00577 322 aaKnown RBP20.55■□□□□ 0.88
SHKBP1-223ENST00000600552 CHST3Q7LGC8 479 aa20.55■□□□□ 0.88
SHKBP1-223ENST00000600552 ENAHQ8N8S7 591 aaPredicted RBP20.55■□□□□ 0.88
SHKBP1-223ENST00000600552 SCFD2Q8WU76 684 aa20.55■□□□□ 0.88
SHKBP1-223ENST00000600552 TAAR1Q96RJ0 339 aa20.55■□□□□ 0.88
SHKBP1-223ENST00000600552 DSCC1Q9BVC3 393 aa20.55■□□□□ 0.88
SHKBP1-223ENST00000600552 MTIF3Q9H2K0 278 aaKnown RBP20.55■□□□□ 0.88
SHKBP1-223ENST00000600552 MSRAQ9UJ68 235 aa20.55■□□□□ 0.88
SHKBP1-223ENST00000600552 TNKSO95271 1327 aa20.54■□□□□ 0.88
SHKBP1-223ENST00000600552 RAD50Q92878 1312 aa20.54■□□□□ 0.88
SHKBP1-223ENST00000600552 RBM47A0AV96 593 aaKnown RBP20.54■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms