RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 MAML3Q96JK9 1138 aa12.21□□□□□ -0.45
LIG1-210ENST00000596332 TAAR1Q96RJ0 339 aa12.21□□□□□ -0.45
LIG1-210ENST00000596332 MCOLN1Q9GZU1 580 aa12.21□□□□□ -0.45
LIG1-210ENST00000596332 MAF1Q9H063 256 aa12.21□□□□□ -0.45
LIG1-210ENST00000596332 KATNBL1Q9H079 304 aa12.21□□□□□ -0.45
LIG1-210ENST00000596332 ZMYND12Q9H0C1 365 aa12.21□□□□□ -0.45
LIG1-210ENST00000596332 SH2B1Q9NRF2 756 aaPredicted RBP12.21□□□□□ -0.45
LIG1-210ENST00000596332 PNMA2Q9UL42 364 aa12.21□□□□□ -0.45
LIG1-210ENST00000596332 DIS3Q9Y2L1 958 aaKnown RBP12.21□□□□□ -0.45
LIG1-210ENST00000596332 MRPL11Q9Y3B7 192 aaKnown RBP12.21□□□□□ -0.45
LIG1-210ENST00000596332 CTDP1Q9Y5B0 961 aaPredicted RBP12.21□□□□□ -0.45
LIG1-210ENST00000596332 ZNFX1Q9P2E3 1918 aaKnown RBP12.21□□□□□ -0.46
LIG1-210ENST00000596332 PTPDC1A2A3K4 754 aa12.2□□□□□ -0.46
LIG1-210ENST00000596332 PIK3CDO00329 1044 aa12.2□□□□□ -0.46
LIG1-210ENST00000596332 DEXIO95424 95 aa12.2□□□□□ -0.46
LIG1-210ENST00000596332 SNAI1O95863 264 aaPredicted RBP12.2□□□□□ -0.46
LIG1-210ENST00000596332 EDNRBP24530 442 aa12.2□□□□□ -0.46
LIG1-210ENST00000596332 HOXA13P31271 388 aaPredicted RBP12.2□□□□□ -0.46
LIG1-210ENST00000596332 MCM2P49736 904 aa12.2□□□□□ -0.46
LIG1-210ENST00000596332 SSRP1Q08945 709 aaKnown RBP12.2□□□□□ -0.46
LIG1-210ENST00000596332 KCTD2Q14681 263 aa12.2□□□□□ -0.46
LIG1-210ENST00000596332 WDR78Q5VTH9 848 aa12.2□□□□□ -0.46
LIG1-210ENST00000596332 FBXO46Q6PJ61 603 aaPredicted RBP12.2□□□□□ -0.46
LIG1-210ENST00000596332 NSMFQ6X4W1 530 aa12.2□□□□□ -0.46
LIG1-210ENST00000596332 RNF207Q6ZRF8 634 aa12.2□□□□□ -0.46
LIG1-210ENST00000596332 ANKRD35Q8N283 1001 aa12.2□□□□□ -0.46
LIG1-210ENST00000596332 TRPV1Q8NER1 839 aa12.2□□□□□ -0.46
LIG1-210ENST00000596332 PXYLP1Q8TE99 480 aa12.2□□□□□ -0.46
LIG1-210ENST00000596332 SOCS4Q8WXH5 440 aa12.2□□□□□ -0.46
LIG1-210ENST00000596332 LLPHQ9BRT6 129 aaKnown RBP12.2□□□□□ -0.46
LIG1-210ENST00000596332 CENPFP49454 3210 aa12.2□□□□□ -0.46
LIG1-210ENST00000596332 ESYT2A0FGR8 921 aa12.19□□□□□ -0.46
LIG1-210ENST00000596332 ADCY3O60266 1144 aa12.19□□□□□ -0.46
LIG1-210ENST00000596332 HOXD10P28358 340 aa12.19□□□□□ -0.46
LIG1-210ENST00000596332 RGS2P41220 211 aa12.19□□□□□ -0.46
LIG1-210ENST00000596332 OLFML2BQ68BL8 750 aa12.19□□□□□ -0.46
LIG1-210ENST00000596332 HEATR3Q7Z4Q2 680 aa12.19□□□□□ -0.46
LIG1-210ENST00000596332 ZNF467Q7Z7K2 595 aaPredicted RBP12.19□□□□□ -0.46
LIG1-210ENST00000596332 CRYGNQ8WXF5 182 aa12.19□□□□□ -0.46
LIG1-210ENST00000596332 APBA2Q99767 749 aa12.19□□□□□ -0.46
LIG1-210ENST00000596332 RIC8AQ9NPQ8 531 aa12.19□□□□□ -0.46
LIG1-210ENST00000596332 SH3GLB2Q9NR46 395 aa12.19□□□□□ -0.46
LIG1-210ENST00000596332 MAP3K20Q9NYL2 800 aaKnown RBP12.19□□□□□ -0.46
LIG1-210ENST00000596332 VPS54Q9P1Q0 977 aa12.19□□□□□ -0.46
LIG1-210ENST00000596332 ORC3Q9UBD5 711 aaPredicted RBP12.19□□□□□ -0.46
LIG1-210ENST00000596332 SEC63Q9UGP8 760 aaKnown RBP12.19□□□□□ -0.46
LIG1-210ENST00000596332 IVNS1ABPQ9Y6Y0 642 aa12.19□□□□□ -0.46
LIG1-210ENST00000596332 PFASO15067 1338 aa12.18□□□□□ -0.46
LIG1-210ENST00000596332 FRMPD4Q14CM0 1322 aa12.18□□□□□ -0.46
LIG1-210ENST00000596332 RPTORQ8N122 1335 aa12.18□□□□□ -0.46
LIG1-210ENST00000596332 POTEFA5A3E0 1075 aa12.18□□□□□ -0.46
LIG1-210ENST00000596332 SMCO2A6NFE2 343 aa12.18□□□□□ -0.46
LIG1-210ENST00000596332 POTEB2H3BUK9 544 aa12.18□□□□□ -0.46
LIG1-210ENST00000596332 hCG_1984214I3L0E3 225 aa12.18□□□□□ -0.46
LIG1-210ENST00000596332 CPLX1O14810 134 aa12.18□□□□□ -0.46
LIG1-210ENST00000596332 RGS20O76081 388 aa12.18□□□□□ -0.46
LIG1-210ENST00000596332 CFBP00751 764 aa12.18□□□□□ -0.46
LIG1-210ENST00000596332 CALML3P27482 149 aa12.18□□□□□ -0.46
LIG1-210ENST00000596332 CYP2C19P33261 490 aa12.18□□□□□ -0.46
LIG1-210ENST00000596332 CACNB2Q08289 660 aaPredicted RBP12.18□□□□□ -0.46
LIG1-210ENST00000596332 PKN2Q16513 984 aaKnown RBP12.18□□□□□ -0.46
LIG1-210ENST00000596332 UBE2SQ16763 222 aa12.18□□□□□ -0.46
LIG1-210ENST00000596332 PRAMEF19Q5SWL8 479 aa12.18□□□□□ -0.46
LIG1-210ENST00000596332 TMEM63BQ5T3F8 832 aa12.18□□□□□ -0.46
LIG1-210ENST00000596332 PPP1R18Q6NYC8 613 aa12.18□□□□□ -0.46
LIG1-210ENST00000596332 DPP9Q86TI2 863 aa12.18□□□□□ -0.46
LIG1-210ENST00000596332 SAMD3Q8N6K7 520 aa12.18□□□□□ -0.46
LIG1-210ENST00000596332 ZNF713Q8N859 430 aaPredicted RBP12.18□□□□□ -0.46
LIG1-210ENST00000596332 IL31RAQ8NI17 732 aa12.18□□□□□ -0.46
LIG1-210ENST00000596332 SH3TC2Q8TF17 1288 aa12.18□□□□□ -0.46
LIG1-210ENST00000596332 DDX11Q96FC9 970 aa12.18□□□□□ -0.46
LIG1-210ENST00000596332 TINF2Q9BSI4 451 aa12.18□□□□□ -0.46
LIG1-210ENST00000596332 PHF20Q9BVI0 1012 aa12.18□□□□□ -0.46
LIG1-210ENST00000596332 PSTPIP2Q9H939 334 aa12.18□□□□□ -0.46
LIG1-210ENST00000596332 TMEM260Q9NX78 707 aa12.18□□□□□ -0.46
LIG1-210ENST00000596332 KCNJ14Q9UNX9 436 aa12.18□□□□□ -0.46
LIG1-210ENST00000596332 GCOM1H8Y6P7 765 aaPredicted RBP12.17□□□□□ -0.46
LIG1-210ENST00000596332 POLR2MP0CAP2 368 aa12.17□□□□□ -0.46
LIG1-210ENST00000596332 ZNF865P0CJ78 1059 aaPredicted RBP12.17□□□□□ -0.46
LIG1-210ENST00000596332 GRK4P32298 578 aa12.17□□□□□ -0.46
LIG1-210ENST00000596332 ALDH5A1P51649 535 aaPredicted RBP12.17□□□□□ -0.46
LIG1-210ENST00000596332 NAPAP54920 295 aa12.17□□□□□ -0.46
LIG1-210ENST00000596332 ARHGEF6Q15052 776 aa12.17□□□□□ -0.46
LIG1-210ENST00000596332 EARS2Q5JPH6 523 aaKnown RBP12.17□□□□□ -0.46
LIG1-210ENST00000596332 MCF2L2Q86YR7 1114 aa12.17□□□□□ -0.46
LIG1-210ENST00000596332 CCAR1Q8IX12 1150 aaKnown RBP12.17□□□□□ -0.46
LIG1-210ENST00000596332 OXER1Q8TDS5 423 aa12.17□□□□□ -0.46
LIG1-210ENST00000596332 TNFRSF25Q93038 417 aa12.17□□□□□ -0.46
LIG1-210ENST00000596332 ARMC5Q96C12 935 aa12.17□□□□□ -0.46
LIG1-210ENST00000596332 RBM27Q9P2N5 1060 aaKnown RBP12.17□□□□□ -0.46
LIG1-210ENST00000596332 MYH6P13533 1939 aa12.17□□□□□ -0.46
LIG1-210ENST00000596332 K7ELQ4 463 aaPredicted RBP12.16□□□□□ -0.46
LIG1-210ENST00000596332 ADCY6O43306 1168 aa12.16□□□□□ -0.46
LIG1-210ENST00000596332 CDKL5O76039 1030 aa12.16□□□□□ -0.46
LIG1-210ENST00000596332 CYBAP13498 195 aa12.16□□□□□ -0.46
LIG1-210ENST00000596332 MRPS9P82933 396 aaKnown RBP12.16□□□□□ -0.46
LIG1-210ENST00000596332 TRAF1Q13077 416 aa12.16□□□□□ -0.46
LIG1-210ENST00000596332 MTFR1Q15390 333 aa12.16□□□□□ -0.46
LIG1-210ENST00000596332 TAPT1Q6NXT6 567 aa12.16□□□□□ -0.46
LIG1-210ENST00000596332 CPLX2Q6PUV4 134 aaKnown RBP12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms