RNA–Protein interactions for RNA: ENST00000588617.1

VMP1-208, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 884 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-208ENST00000588617 CD3EP07766 207 aa9.91□□□□□ -0.82
VMP1-208ENST00000588617 SLURP2P0DP57 97 aa9.91□□□□□ -0.82
VMP1-208ENST00000588617 LSSP48449 732 aa9.91□□□□□ -0.82
VMP1-208ENST00000588617 FAPQ12884 760 aa9.91□□□□□ -0.82
VMP1-208ENST00000588617 SAFB2Q14151 953 aaKnown RBP eCLIP9.91□□□□□ -0.82
VMP1-208ENST00000588617 CXorf57Q6NSI4 855 aaKnown RBP9.91□□□□□ -0.82
VMP1-208ENST00000588617 GPAT2Q6NUI2 795 aa9.91□□□□□ -0.82
VMP1-208ENST00000588617 HDGFL2Q7Z4V5 671 aaPredicted RBP9.91□□□□□ -0.82
VMP1-208ENST00000588617 DGKHQ86XP1 1220 aa9.91□□□□□ -0.82
VMP1-208ENST00000588617 FRS2Q8WU20 508 aa9.91□□□□□ -0.82
VMP1-208ENST00000588617 COPS5Q92905 334 aa9.91□□□□□ -0.82
VMP1-208ENST00000588617 FUBP3Q96I24 572 aaKnown RBP eCLIP9.91□□□□□ -0.82
VMP1-208ENST00000588617 MCMBPQ9BTE3 642 aa9.91□□□□□ -0.82
VMP1-208ENST00000588617 ASCC2Q9H1I8 757 aaPredicted RBP9.91□□□□□ -0.82
VMP1-208ENST00000588617 EMC7Q9NPA0 242 aa9.91□□□□□ -0.82
VMP1-208ENST00000588617 ST14Q9Y5Y6 855 aa9.91□□□□□ -0.82
VMP1-208ENST00000588617 TRAF5O00463 557 aa9.9□□□□□ -0.82
VMP1-208ENST00000588617 SART1O43290 800 aaKnown RBP9.9□□□□□ -0.82
VMP1-208ENST00000588617 ULK1O75385 1050 aa9.9□□□□□ -0.82
VMP1-208ENST00000588617 PRAMEF1O95521 474 aa9.9□□□□□ -0.82
VMP1-208ENST00000588617 IARSP41252 1262 aaKnown RBP9.9□□□□□ -0.82
VMP1-208ENST00000588617 DGKGP49619 791 aa9.9□□□□□ -0.82
VMP1-208ENST00000588617 OCRLQ01968 901 aa9.9□□□□□ -0.82
VMP1-208ENST00000588617 ACBD5Q5T8D3 534 aaPredicted RBP9.9□□□□□ -0.82
VMP1-208ENST00000588617 ZNF385CQ66K41 422 aaPredicted RBP9.9□□□□□ -0.82
VMP1-208ENST00000588617 TPH2Q8IWU9 490 aa9.9□□□□□ -0.82
VMP1-208ENST00000588617 CBARPQ8N350 705 aaPredicted RBP9.9□□□□□ -0.82
VMP1-208ENST00000588617 NPLOC4Q8TAT6 608 aa9.9□□□□□ -0.82
VMP1-208ENST00000588617 PUM2Q8TB72 1066 aaKnown RBP eCLIP9.9□□□□□ -0.82
VMP1-208ENST00000588617 CHTF18Q8WVB6 975 aa9.9□□□□□ -0.82
VMP1-208ENST00000588617 ALG1Q9BT22 464 aa9.9□□□□□ -0.82
VMP1-208ENST00000588617 VTA1Q9NP79 307 aa9.9□□□□□ -0.82
VMP1-208ENST00000588617 GPR27Q9NS67 375 aa9.9□□□□□ -0.82
VMP1-208ENST00000588617 SPTLC3Q9NUV7 552 aa9.9□□□□□ -0.82
VMP1-208ENST00000588617 C2orf71A6NGG8 1288 aa9.89□□□□□ -0.83
VMP1-208ENST00000588617 VSTM5A8MXK1 200 aa9.89□□□□□ -0.83
VMP1-208ENST00000588617 RBAK-RBAKDNI3L0D1 243 aa9.89□□□□□ -0.83
VMP1-208ENST00000588617 GAS2O43903 313 aaKnown RBP9.89□□□□□ -0.83
VMP1-208ENST00000588617 GSNP06396 782 aa9.89□□□□□ -0.83
VMP1-208ENST00000588617 NFICP08651 508 aa9.89□□□□□ -0.83
VMP1-208ENST00000588617 U2AF1L5P0DN76 240 aaPredicted RBP9.89□□□□□ -0.83
VMP1-208ENST00000588617 U2AF1Q01081 240 aaKnown RBP eCLIP9.89□□□□□ -0.831e-15■■■□□ 17.4
VMP1-208ENST00000588617 PAK1Q13153 545 aa9.89□□□□□ -0.83
VMP1-208ENST00000588617 TMED8Q6PL24 325 aaPredicted RBP9.89□□□□□ -0.83
VMP1-208ENST00000588617 AHCYL2Q96HN2 611 aaKnown RBP9.89□□□□□ -0.83
VMP1-208ENST00000588617 PSMG3-AS1Q96PY0 264 aa9.89□□□□□ -0.83
VMP1-208ENST00000588617 ZNF700Q9H0M5 742 aa9.89□□□□□ -0.83
VMP1-208ENST00000588617 RRAGCQ9HB90 399 aa9.89□□□□□ -0.83
VMP1-208ENST00000588617 OBP2AQ9NY56 170 aa9.89□□□□□ -0.83
VMP1-208ENST00000588617 B4GALT6Q9UBX8 382 aa9.89□□□□□ -0.83
VMP1-208ENST00000588617 TMEFF2Q9UIK5 374 aaPredicted RBP9.89□□□□□ -0.83
VMP1-208ENST00000588617 KCNH3Q9ULD8 1083 aa9.89□□□□□ -0.83
VMP1-208ENST00000588617 BACE2Q9Y5Z0 518 aa9.89□□□□□ -0.83
VMP1-208ENST00000588617 K7ESF4 209 aa9.88□□□□□ -0.83
VMP1-208ENST00000588617 AURKAO14965 403 aa9.88□□□□□ -0.83
VMP1-208ENST00000588617 MSCO60682 206 aa9.88□□□□□ -0.83
VMP1-208ENST00000588617 CKMP06732 381 aa9.88□□□□□ -0.83
VMP1-208ENST00000588617 PREPP48147 710 aa9.88□□□□□ -0.83
VMP1-208ENST00000588617 KPNA1P52294 538 aaPredicted RBP9.88□□□□□ -0.83
VMP1-208ENST00000588617 NMIQ13287 307 aaPredicted RBP9.88□□□□□ -0.83
VMP1-208ENST00000588617 TMEM177Q53S58 311 aa9.88□□□□□ -0.83
VMP1-208ENST00000588617 CDPF1Q6NVV7 123 aa9.88□□□□□ -0.83
VMP1-208ENST00000588617 CHST14Q8NCH0 376 aa9.88□□□□□ -0.83
VMP1-208ENST00000588617 PCDH19Q8TAB3 1148 aa9.88□□□□□ -0.83
VMP1-208ENST00000588617 WHAMMQ8TF30 809 aa9.88□□□□□ -0.83
VMP1-208ENST00000588617 SEMA6CQ9H3T2 930 aa9.88□□□□□ -0.83
VMP1-208ENST00000588617 NPFFR2Q9Y5X5 522 aa9.88□□□□□ -0.83
VMP1-208ENST00000588617 PF4V1P10720 104 aa9.87□□□□□ -0.83
VMP1-208ENST00000588617 ATP2A2P16615 1042 aaKnown RBP9.87□□□□□ -0.83
VMP1-208ENST00000588617 LTBRP36941 435 aa9.87□□□□□ -0.83
VMP1-208ENST00000588617 ERVK-21P61565 698 aa9.87□□□□□ -0.83
VMP1-208ENST00000588617 TRIM28Q13263 835 aaKnown RBP9.87□□□□□ -0.83
VMP1-208ENST00000588617 KLF1Q13351 362 aaPredicted RBP9.87□□□□□ -0.83
VMP1-208ENST00000588617 CRTC3Q6UUV7 619 aa9.87□□□□□ -0.83
VMP1-208ENST00000588617 LBX2Q6XYB7 198 aa9.87□□□□□ -0.83
VMP1-208ENST00000588617 SVOPQ8N4V2 548 aa9.87□□□□□ -0.83
VMP1-208ENST00000588617 TOP6BLQ8N6T0 577 aa9.87□□□□□ -0.83
VMP1-208ENST00000588617 SVIPQ8NHG7 77 aa9.87□□□□□ -0.83
VMP1-208ENST00000588617 FBLIM1Q8WUP2 373 aa9.87□□□□□ -0.83
VMP1-208ENST00000588617 YIPF2Q9BWQ6 316 aa9.87□□□□□ -0.83
VMP1-208ENST00000588617 CELF4Q9BZC1 486 aaKnown RBP9.87□□□□□ -0.83
VMP1-208ENST00000588617 SLC13A1Q9BZW2 595 aa9.87□□□□□ -0.83
VMP1-208ENST00000588617 ANKRD6Q9Y2G4 727 aa9.87□□□□□ -0.83
VMP1-208ENST00000588617 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP9.86□□□□□ -0.83
VMP1-208ENST00000588617 F8W735 103 aaPredicted RBP9.86□□□□□ -0.83
VMP1-208ENST00000588617 ARNTLO00327 626 aa9.86□□□□□ -0.83
VMP1-208ENST00000588617 GRIK1P39086 918 aa9.86□□□□□ -0.83
VMP1-208ENST00000588617 NOP2P46087 812 aaKnown RBP9.86□□□□□ -0.83
VMP1-208ENST00000588617 SEPHS1P49903 392 aa9.86□□□□□ -0.83
VMP1-208ENST00000588617 DNM2P50570 870 aa9.86□□□□□ -0.83
VMP1-208ENST00000588617 PCBP2Q15366 365 aaKnown RBP eCLIP9.86□□□□□ -0.83
VMP1-208ENST00000588617 VPS72Q15906 364 aa9.86□□□□□ -0.83
VMP1-208ENST00000588617 INAVAQ3KP66 663 aa9.86□□□□□ -0.83
VMP1-208ENST00000588617 RGL3Q3MIN7 710 aa9.86□□□□□ -0.83
VMP1-208ENST00000588617 E4F1Q66K89 784 aaPredicted RBP9.86□□□□□ -0.83
VMP1-208ENST00000588617 PNMA8AQ86V59 439 aaPredicted RBP9.86□□□□□ -0.83
VMP1-208ENST00000588617 DTWD2Q8NBA8 298 aa9.86□□□□□ -0.83
VMP1-208ENST00000588617 WASHC2AQ641Q2 1341 aa9.85□□□□□ -0.83
VMP1-208ENST00000588617 CNTNAP4Q9C0A0 1308 aa9.85□□□□□ -0.83
VMP1-208ENST00000588617 PTPDC1A2A3K4 754 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms