RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 TAF1CQ15572 869 aaPredicted RBP11.44□□□□□ -0.58
CIITA-208ENST00000572665 CCL15Q16663 113 aa11.44□□□□□ -0.58
CIITA-208ENST00000572665 ATP2B3Q16720 1220 aa11.44□□□□□ -0.58
CIITA-208ENST00000572665 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.44□□□□□ -0.58
CIITA-208ENST00000572665 NBPF11Q86T75 865 aa11.44□□□□□ -0.58
CIITA-208ENST00000572665 ERO1BQ86YB8 467 aa11.44□□□□□ -0.58
CIITA-208ENST00000572665 KLHDC4Q8TBB5 520 aa11.44□□□□□ -0.58
CIITA-208ENST00000572665 EPS8L3Q8TE67 593 aaKnown RBP11.44□□□□□ -0.58
CIITA-208ENST00000572665 BCL11AQ9H165 835 aa11.44□□□□□ -0.58
CIITA-208ENST00000572665 NPHS2Q9NP85 383 aa11.44□□□□□ -0.58
CIITA-208ENST00000572665 AVENQ9NQS1 362 aaPredicted RBP11.44□□□□□ -0.58
CIITA-208ENST00000572665 DENND2AQ9ULE3 1009 aa11.44□□□□□ -0.58
CIITA-208ENST00000572665 AOX1Q06278 1338 aa11.43□□□□□ -0.58
CIITA-208ENST00000572665 GNA15P30679 374 aa11.43□□□□□ -0.58
CIITA-208ENST00000572665 SNAPC2Q13487 334 aa11.43□□□□□ -0.58
CIITA-208ENST00000572665 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.43□□□□□ -0.58
CIITA-208ENST00000572665 PI16Q6UXB8 463 aa11.43□□□□□ -0.58
CIITA-208ENST00000572665 FAM161BQ96MY7 647 aa11.43□□□□□ -0.58
CIITA-208ENST00000572665 WRNIP1Q96S55 665 aa11.43□□□□□ -0.58
CIITA-208ENST00000572665 ZNF341Q9BYN7 854 aa11.43□□□□□ -0.58
CIITA-208ENST00000572665 R3HDMLQ9H3Y0 253 aa11.43□□□□□ -0.58
CIITA-208ENST00000572665 SALL4Q9UJQ4 1053 aa11.43□□□□□ -0.58
CIITA-208ENST00000572665 PTPN22Q9Y2R2 807 aa11.43□□□□□ -0.58
CIITA-208ENST00000572665 RBBP6Q7Z6E9 1792 aaKnown RBP11.42□□□□□ -0.58
CIITA-208ENST00000572665 CCER2I3L3R5 266 aa11.42□□□□□ -0.58
CIITA-208ENST00000572665 IPO8O15397 1037 aaKnown RBP11.42□□□□□ -0.58
CIITA-208ENST00000572665 SIN3BO75182 1162 aa11.42□□□□□ -0.58
CIITA-208ENST00000572665 KIF4AO95239 1232 aa11.42□□□□□ -0.58
CIITA-208ENST00000572665 GNAI3P08754 354 aa11.42□□□□□ -0.58
CIITA-208ENST00000572665 RFX5P48382 616 aaPredicted RBP11.42□□□□□ -0.58
CIITA-208ENST00000572665 NRLP54845 237 aa11.42□□□□□ -0.58
CIITA-208ENST00000572665 PPATQ06203 517 aa11.42□□□□□ -0.58
CIITA-208ENST00000572665 PSMD2Q13200 908 aa11.42□□□□□ -0.58
CIITA-208ENST00000572665 MRPL58Q14197 206 aaKnown RBP11.42□□□□□ -0.58
CIITA-208ENST00000572665 APOBEC3HQ6NTF7 200 aaKnown RBP11.42□□□□□ -0.58
CIITA-208ENST00000572665 TRMT2AQ8IZ69 625 aaKnown RBP11.42□□□□□ -0.58
CIITA-208ENST00000572665 CD99L2Q8TCZ2 262 aa11.42□□□□□ -0.58
CIITA-208ENST00000572665 FAM151AQ8WW52 585 aa11.42□□□□□ -0.58
CIITA-208ENST00000572665 ARHGAP45Q92619 1136 aa11.42□□□□□ -0.58
CIITA-208ENST00000572665 PTPN18Q99952 460 aa11.42□□□□□ -0.58
CIITA-208ENST00000572665 NOB1Q9ULX3 412 aaKnown RBP11.42□□□□□ -0.58
CIITA-208ENST00000572665 AKAP2Q9Y2D5 859 aa11.42□□□□□ -0.58
CIITA-208ENST00000572665 SALL1Q9NSC2 1324 aa11.41□□□□□ -0.58
CIITA-208ENST00000572665 PDE4DIPQ5VU43 2346 aa11.41□□□□□ -0.58
CIITA-208ENST00000572665 EDN3P14138 238 aa11.41□□□□□ -0.58
CIITA-208ENST00000572665 CACNB3P54284 484 aa11.41□□□□□ -0.58
CIITA-208ENST00000572665 PCBP4P57723 403 aaKnown RBP11.41□□□□□ -0.58
CIITA-208ENST00000572665 HYAL2Q12891 473 aa11.41□□□□□ -0.58
CIITA-208ENST00000572665 PPIL2Q13356 520 aa11.41□□□□□ -0.58
CIITA-208ENST00000572665 GRIK5Q16478 980 aa11.41□□□□□ -0.58
CIITA-208ENST00000572665 SPTY2D1Q68D10 685 aaPredicted RBP11.41□□□□□ -0.58
CIITA-208ENST00000572665 ATG9AQ7Z3C6 839 aa11.41□□□□□ -0.58
CIITA-208ENST00000572665 GCC1Q96CN9 775 aa11.41□□□□□ -0.58
CIITA-208ENST00000572665 FRMD6Q96NE9 622 aa11.41□□□□□ -0.58
CIITA-208ENST00000572665 COL25A1Q9BXS0 654 aaPredicted RBP11.41□□□□□ -0.58
CIITA-208ENST00000572665 SIL1Q9H173 461 aa11.41□□□□□ -0.58
CIITA-208ENST00000572665 MYH2Q9UKX2 1941 aa11.41□□□□□ -0.58
CIITA-208ENST00000572665 TLR2O60603 784 aa11.4□□□□□ -0.58
CIITA-208ENST00000572665 ARAFP10398 606 aa11.4□□□□□ -0.58
CIITA-208ENST00000572665 MAP2K3P46734 347 aa11.4□□□□□ -0.58
CIITA-208ENST00000572665 PRMT2P55345 433 aa11.4□□□□□ -0.58
CIITA-208ENST00000572665 GPLD1P80108 840 aa11.4□□□□□ -0.58
CIITA-208ENST00000572665 NFX1Q12986 1120 aaKnown RBP11.4□□□□□ -0.58
CIITA-208ENST00000572665 RNFT1Q5M7Z0 435 aa11.4□□□□□ -0.58
CIITA-208ENST00000572665 BRI3BPQ8WY22 251 aa11.4□□□□□ -0.58
CIITA-208ENST00000572665 COPRSQ9NQ92 184 aa11.4□□□□□ -0.58
CIITA-208ENST00000572665 LATS2Q9NRM7 1088 aa11.4□□□□□ -0.58
CIITA-208ENST00000572665 KLF15Q9UIH9 416 aa11.4□□□□□ -0.58
CIITA-208ENST00000572665 LRRFIP2Q9Y608 721 aaKnown RBP11.4□□□□□ -0.58
CIITA-208ENST00000572665 SNCAIPQ9Y6H5 919 aa11.4□□□□□ -0.58
CIITA-208ENST00000572665 PDS5AQ29RF7 1337 aaKnown RBP11.39□□□□□ -0.59
CIITA-208ENST00000572665 ZBTB42B2RXF5 422 aa11.39□□□□□ -0.59
CIITA-208ENST00000572665 HOXD10P28358 340 aa11.39□□□□□ -0.59
CIITA-208ENST00000572665 MVPQ14764 893 aaKnown RBP11.39□□□□□ -0.59
CIITA-208ENST00000572665 SLC9C1Q4G0N8 1177 aa11.39□□□□□ -0.59
CIITA-208ENST00000572665 PEAR1Q5VY43 1037 aaPredicted RBP11.39□□□□□ -0.59
CIITA-208ENST00000572665 DZIP1Q86YF9 867 aaKnown RBP11.39□□□□□ -0.59
CIITA-208ENST00000572665 ZKSCAN4Q969J2 545 aaPredicted RBP11.39□□□□□ -0.59
CIITA-208ENST00000572665 ARMC5Q96C12 935 aa11.39□□□□□ -0.59
CIITA-208ENST00000572665 NSUN5Q96P11 429 aaKnown RBP11.39□□□□□ -0.59
CIITA-208ENST00000572665 UBE2OQ9C0C9 1292 aaKnown RBP11.39□□□□□ -0.59
CIITA-208ENST00000572665 USP40Q9NVE5 1235 aa11.39□□□□□ -0.59
CIITA-208ENST00000572665 DNAJB12Q9NXW2 375 aaKnown RBP11.39□□□□□ -0.59
CIITA-208ENST00000572665 DAGLAQ9Y4D2 1042 aa11.39□□□□□ -0.59
CIITA-208ENST00000572665 DOCK2Q92608 1830 aa11.38□□□□□ -0.59
CIITA-208ENST00000572665 SORBS3O60504 671 aa11.38□□□□□ -0.59
CIITA-208ENST00000572665 ENTPD3O75355 529 aa11.38□□□□□ -0.59
CIITA-208ENST00000572665 ADH6P28332 368 aa11.38□□□□□ -0.59
CIITA-208ENST00000572665 PRDX5P30044 214 aa11.38□□□□□ -0.59
CIITA-208ENST00000572665 TCP10Q12799 353 aa11.38□□□□□ -0.59
CIITA-208ENST00000572665 CDC42EP5Q6NZY7 148 aa11.38□□□□□ -0.59
CIITA-208ENST00000572665 MIGA2Q7L4E1 593 aa11.38□□□□□ -0.59
CIITA-208ENST00000572665 NCAPG2Q86XI2 1143 aa11.38□□□□□ -0.59
CIITA-208ENST00000572665 FAM43AQ8N2R8 423 aa11.38□□□□□ -0.59
CIITA-208ENST00000572665 TNFRSF25Q93038 417 aa11.38□□□□□ -0.59
CIITA-208ENST00000572665 IGFLR1Q9H665 355 aa11.38□□□□□ -0.59
CIITA-208ENST00000572665 AK5Q9Y6K8 562 aa11.38□□□□□ -0.59
CIITA-208ENST00000572665 A0A1W2PP55 124 aa11.37□□□□□ -0.59
CIITA-208ENST00000572665 SRGAP3O43295 1099 aa11.37□□□□□ -0.59
CIITA-208ENST00000572665 GADD45BO75293 160 aaPredicted RBP11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms