RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 IMPACTQ9P2X3 320 aa4.02□□□□□ -1.77
VPS35-208ENST00000568612 PPP1R1BQ9UD71 204 aaPredicted RBP4.02□□□□□ -1.77
VPS35-208ENST00000568612 CGGBP1Q9UFW8 167 aaPredicted RBP4.02□□□□□ -1.77
VPS35-208ENST00000568612 PRKAG3Q9UGI9 489 aa4.02□□□□□ -1.77
VPS35-208ENST00000568612 AKT3Q9Y243 479 aa4.02□□□□□ -1.77
VPS35-208ENST00000568612 ZNF281Q9Y2X9 895 aa4.02□□□□□ -1.77
VPS35-208ENST00000568612 A0A087WZG4 1122 aa4.01□□□□□ -1.77
VPS35-208ENST00000568612 KRTAP9-6A0A140TA67 174 aa4.01□□□□□ -1.77
VPS35-208ENST00000568612 A0A1W2PQ45 241 aaPredicted RBP4.01□□□□□ -1.77
VPS35-208ENST00000568612 A0A1W2PQY0 241 aa4.01□□□□□ -1.77
VPS35-208ENST00000568612 OR14I1A6ND48 311 aa4.01□□□□□ -1.77
VPS35-208ENST00000568612 NOTOA8MTQ0 251 aa4.01□□□□□ -1.77
VPS35-208ENST00000568612 NOP56O00567 594 aaKnown RBP4.01□□□□□ -1.77
VPS35-208ENST00000568612 NFIBO00712 420 aa4.01□□□□□ -1.77
VPS35-208ENST00000568612 ZNF500O60304 480 aaPredicted RBP4.01□□□□□ -1.77
VPS35-208ENST00000568612 KCNH1O95259 989 aa4.01□□□□□ -1.77
VPS35-208ENST00000568612 TBC1D8O95759 1140 aa4.01□□□□□ -1.77
VPS35-208ENST00000568612 FGRP09769 529 aa4.01□□□□□ -1.77
VPS35-208ENST00000568612 SEPHS1P49903 392 aa4.01□□□□□ -1.77
VPS35-208ENST00000568612 CYP4F8P98187 520 aa4.01□□□□□ -1.77
VPS35-208ENST00000568612 AMPD2Q01433 879 aa4.01□□□□□ -1.77
VPS35-208ENST00000568612 MAP2K1Q02750 393 aaPredicted RBP4.01□□□□□ -1.77
VPS35-208ENST00000568612 MESP2Q0VG99 397 aa4.01□□□□□ -1.77
VPS35-208ENST00000568612 LAPTM5Q13571 262 aa4.01□□□□□ -1.77
VPS35-208ENST00000568612 FAM50AQ14320 339 aaKnown RBP4.01□□□□□ -1.77
VPS35-208ENST00000568612 NCAPHQ15003 741 aa4.01□□□□□ -1.77
VPS35-208ENST00000568612 SV2CQ496J9 727 aa4.01□□□□□ -1.77
VPS35-208ENST00000568612 HLA-DQA1Q5Y7H0 255 aa4.01□□□□□ -1.77
VPS35-208ENST00000568612 CYP2R1Q6VVX0 501 aa4.01□□□□□ -1.77
VPS35-208ENST00000568612 NLRX1Q86UT6 975 aa4.01□□□□□ -1.77
VPS35-208ENST00000568612 MCF2L2Q86YR7 1114 aa4.01□□□□□ -1.77
VPS35-208ENST00000568612 IRF2BP1Q8IU81 584 aa4.01□□□□□ -1.77
VPS35-208ENST00000568612 FAM178BQ8IXR5 827 aa4.01□□□□□ -1.77
VPS35-208ENST00000568612 CRACR2BQ8N4Y2 399 aaPredicted RBP4.01□□□□□ -1.77
VPS35-208ENST00000568612 KCNN1Q92952 543 aa4.01□□□□□ -1.77
VPS35-208ENST00000568612 PTCHD1Q96NR3 888 aa4.01□□□□□ -1.77
VPS35-208ENST00000568612 JMJD8Q96S16 334 aa4.01□□□□□ -1.77
VPS35-208ENST00000568612 PPP1R16BQ96T49 567 aa4.01□□□□□ -1.77
VPS35-208ENST00000568612 ST7Q9NRC1 585 aa4.01□□□□□ -1.77
VPS35-208ENST00000568612 TERF2IPQ9NYB0 399 aa4.01□□□□□ -1.77
VPS35-208ENST00000568612 APEX2Q9UBZ4 518 aa4.01□□□□□ -1.77
VPS35-208ENST00000568612 SCRIBQ14160 1630 aa4.01□□□□□ -1.77
VPS35-208ENST00000568612 NUDT19A8MXV4 375 aa4□□□□□ -1.77
VPS35-208ENST00000568612 FGF10O15520 208 aaPredicted RBP4□□□□□ -1.77
VPS35-208ENST00000568612 EFEMP2O95967 443 aa4□□□□□ -1.77
VPS35-208ENST00000568612 PNLIPP16233 465 aa4□□□□□ -1.77
VPS35-208ENST00000568612 TACR1P25103 407 aa4□□□□□ -1.77
VPS35-208ENST00000568612 SSR1P43307 286 aaKnown RBP4□□□□□ -1.77
VPS35-208ENST00000568612 RAP1GAPP47736 663 aa4□□□□□ -1.77
VPS35-208ENST00000568612 ZKSCAN8Q15776 578 aaPredicted RBP4□□□□□ -1.77
VPS35-208ENST00000568612 FXNQ16595 210 aa4□□□□□ -1.77
VPS35-208ENST00000568612 POMZP3Q6PJE2 187 aa4□□□□□ -1.77
VPS35-208ENST00000568612 RINLQ6ZS11 566 aa4□□□□□ -1.77
VPS35-208ENST00000568612 SLCO6A1Q86UG4 719 aa4□□□□□ -1.77
VPS35-208ENST00000568612 SUGP2Q8IX01 1082 aaKnown RBP eCLIP4□□□□□ -1.77
VPS35-208ENST00000568612 EXOC8Q8IYI6 725 aa4□□□□□ -1.77
VPS35-208ENST00000568612 FAM9BQ8IZU0 186 aa4□□□□□ -1.77
VPS35-208ENST00000568612 HNRNPLLQ8WVV9 542 aaKnown RBP4□□□□□ -1.77
VPS35-208ENST00000568612 MKL1Q969V6 931 aa4□□□□□ -1.77
VPS35-208ENST00000568612 SHISA4Q96DD7 197 aa4□□□□□ -1.77
VPS35-208ENST00000568612 SLC26A8Q96RN1 970 aa4□□□□□ -1.77
VPS35-208ENST00000568612 CCDC94Q9BW85 323 aaPredicted RBP4□□□□□ -1.77
VPS35-208ENST00000568612 LGR4Q9BXB1 951 aa4□□□□□ -1.77
VPS35-208ENST00000568612 CRTAC1Q9NQ79 661 aa4□□□□□ -1.77
VPS35-208ENST00000568612 SUSD2Q9UGT4 822 aa4□□□□□ -1.77
VPS35-208ENST00000568612 BACE2Q9Y5Z0 518 aa4□□□□□ -1.77
VPS35-208ENST00000568612 TCAF2A6NFQ2 919 aa3.99□□□□□ -1.77
VPS35-208ENST00000568612 C2orf71A6NGG8 1288 aa3.99□□□□□ -1.77
VPS35-208ENST00000568612 GOLIM4O00461 696 aa3.99□□□□□ -1.77
VPS35-208ENST00000568612 AURKAO14965 403 aa3.99□□□□□ -1.77
VPS35-208ENST00000568612 MPOP05164 745 aa3.99□□□□□ -1.77
VPS35-208ENST00000568612 C1QTNF9P0C862 333 aa3.99□□□□□ -1.77
VPS35-208ENST00000568612 RIPK4P57078 832 aa3.99□□□□□ -1.77
VPS35-208ENST00000568612 ZC3H6P61129 1189 aaKnown RBP3.99□□□□□ -1.77
VPS35-208ENST00000568612 SRSF3P84103 164 aaKnown RBP3.99□□□□□ -1.77
VPS35-208ENST00000568612 LMOD3Q0VAK6 560 aa3.99□□□□□ -1.77
VPS35-208ENST00000568612 RAB3GAP1Q15042 981 aa3.99□□□□□ -1.77
VPS35-208ENST00000568612 CCDC96Q2M329 555 aa3.99□□□□□ -1.77
VPS35-208ENST00000568612 NAALADL2Q58DX5 795 aa3.99□□□□□ -1.77
VPS35-208ENST00000568612 EEF1DP3Q658K8 133 aa3.99□□□□□ -1.77
VPS35-208ENST00000568612 BICRALQ6AI39 1079 aa3.99□□□□□ -1.77
VPS35-208ENST00000568612 ATG14Q6ZNE5 492 aa3.99□□□□□ -1.77
VPS35-208ENST00000568612 ANKS3Q6ZW76 656 aa3.99□□□□□ -1.77
VPS35-208ENST00000568612 CPNE8Q86YQ8 564 aa3.99□□□□□ -1.77
VPS35-208ENST00000568612 ARHGEF39Q8N4T4 335 aa3.99□□□□□ -1.77
VPS35-208ENST00000568612 SLC43A3Q8NBI5 491 aa3.99□□□□□ -1.77
VPS35-208ENST00000568612 TMEM52Q8NDY8 209 aa3.99□□□□□ -1.77
VPS35-208ENST00000568612 BVESQ8NE79 360 aa3.99□□□□□ -1.77
VPS35-208ENST00000568612 RCC1LQ96I51 464 aaKnown RBP3.99□□□□□ -1.77
VPS35-208ENST00000568612 MCMBPQ9BTE3 642 aa3.99□□□□□ -1.77
VPS35-208ENST00000568612 SGPP1Q9BX95 441 aa3.99□□□□□ -1.77
VPS35-208ENST00000568612 MCOLN1Q9GZU1 580 aa3.99□□□□□ -1.77
VPS35-208ENST00000568612 RBM28Q9NW13 759 aaKnown RBP3.99□□□□□ -1.77
VPS35-208ENST00000568612 SIRT5Q9NXA8 310 aa3.99□□□□□ -1.77
VPS35-208ENST00000568612 ZBED9Q6R2W3 1325 aa3.98□□□□□ -1.77
VPS35-208ENST00000568612 KIF16BQ96L93 1317 aa3.98□□□□□ -1.77
VPS35-208ENST00000568612 WRNQ14191 1432 aaPredicted RBP eCLIP3.98□□□□□ -1.77
VPS35-208ENST00000568612 LOC102724159A0A0B4J2E5 919 aa3.98□□□□□ -1.77
VPS35-208ENST00000568612 ETV2O00321 342 aaPredicted RBP3.98□□□□□ -1.77
VPS35-208ENST00000568612 SUSD5O60279 629 aa3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms