RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 ZNF143P52747 638 aaPredicted RBP6.58□□□□□ -1.36
VPS35-205ENST00000563984 LAPTM5Q13571 262 aa6.58□□□□□ -1.36
VPS35-205ENST00000563984 TNNI3KQ59H18 835 aa6.58□□□□□ -1.36
VPS35-205ENST00000563984 ADGRF1Q5T601 910 aa6.58□□□□□ -1.36
VPS35-205ENST00000563984 SPTY2D1Q68D10 685 aaPredicted RBP6.58□□□□□ -1.36
VPS35-205ENST00000563984 TMEM132EQ6IEE7 984 aa6.58□□□□□ -1.36
VPS35-205ENST00000563984 KIAA1211LQ6NV74 962 aa6.58□□□□□ -1.36
VPS35-205ENST00000563984 VHLLQ6RSH7 139 aa6.58□□□□□ -1.36
VPS35-205ENST00000563984 RCC1LQ96I51 464 aaKnown RBP6.58□□□□□ -1.36
VPS35-205ENST00000563984 ZDHHC15Q96MV8 337 aa6.58□□□□□ -1.36
VPS35-205ENST00000563984 ACSL6Q9UKU0 697 aa6.58□□□□□ -1.36
VPS35-205ENST00000563984 ANKRD34BA5PLL1 514 aa6.57□□□□□ -1.36
VPS35-205ENST00000563984 HRKO00198 91 aa6.57□□□□□ -1.36
VPS35-205ENST00000563984 FGF10O15520 208 aaPredicted RBP6.57□□□□□ -1.36
VPS35-205ENST00000563984 TBC1D8O95759 1140 aa6.57□□□□□ -1.36
VPS35-205ENST00000563984 NAT2P11245 290 aa6.57□□□□□ -1.36
VPS35-205ENST00000563984 SDHBP21912 280 aa6.57□□□□□ -1.36
VPS35-205ENST00000563984 CEBPAP49715 358 aaPredicted RBP6.57□□□□□ -1.36
VPS35-205ENST00000563984 NCAPHQ15003 741 aa6.57□□□□□ -1.36
VPS35-205ENST00000563984 ARHGEF39Q8N4T4 335 aa6.57□□□□□ -1.36
VPS35-205ENST00000563984 MARCH10Q8NA82 808 aaPredicted RBP6.57□□□□□ -1.36
VPS35-205ENST00000563984 FGD4Q96M96 766 aa6.57□□□□□ -1.36
VPS35-205ENST00000563984 MYH16Q9H6N6 1097 aa6.57□□□□□ -1.36
VPS35-205ENST00000563984 SEMA7AO75326 666 aa6.56□□□□□ -1.36
VPS35-205ENST00000563984 CD3EP07766 207 aa6.56□□□□□ -1.36
VPS35-205ENST00000563984 PRKCAP17252 672 aa6.56□□□□□ -1.36
VPS35-205ENST00000563984 ERVFRD-1P60508 538 aa6.56□□□□□ -1.36
VPS35-205ENST00000563984 ARID5AQ03989 594 aa6.56□□□□□ -1.36
VPS35-205ENST00000563984 GRB10Q13322 594 aa6.56□□□□□ -1.36
VPS35-205ENST00000563984 PPP2R5DQ14738 602 aa6.56□□□□□ -1.36
VPS35-205ENST00000563984 SLC43A3Q8NBI5 491 aa6.56□□□□□ -1.36
VPS35-205ENST00000563984 ADCY4Q8NFM4 1077 aa6.56□□□□□ -1.36
VPS35-205ENST00000563984 JMJD8Q96S16 334 aa6.56□□□□□ -1.36
VPS35-205ENST00000563984 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.56□□□□□ -1.364e-6■■■□□ 14.6
VPS35-205ENST00000563984 TINF2Q9BSI4 451 aa6.56□□□□□ -1.36
VPS35-205ENST00000563984 SUSD2Q9UGT4 822 aa6.56□□□□□ -1.36
VPS35-205ENST00000563984 MRVI1Q9Y6F6 885 aa6.56□□□□□ -1.36
VPS35-205ENST00000563984 ADAMTS20P59510 1910 aa6.55□□□□□ -1.36
VPS35-205ENST00000563984 TEX51A0A1B0GUA7 166 aa6.55□□□□□ -1.36
VPS35-205ENST00000563984 HMGB1P1B2RPK0 211 aaPredicted RBP6.55□□□□□ -1.36
VPS35-205ENST00000563984 ABLIM1O14639 778 aa6.55□□□□□ -1.36
VPS35-205ENST00000563984 SMAD7O15105 426 aaKnown RBP6.55□□□□□ -1.36
VPS35-205ENST00000563984 MPOP05164 745 aa6.55□□□□□ -1.36
VPS35-205ENST00000563984 IFNGR1P15260 489 aa6.55□□□□□ -1.36
VPS35-205ENST00000563984 DLG4P78352 724 aa6.55□□□□□ -1.36
VPS35-205ENST00000563984 CYP4F8P98187 520 aa6.55□□□□□ -1.36
VPS35-205ENST00000563984 KIR3DS1Q14943 382 aa6.55□□□□□ -1.36
VPS35-205ENST00000563984 EEF1DP3Q658K8 133 aa6.55□□□□□ -1.36
VPS35-205ENST00000563984 RCSD1Q6JBY9 416 aa6.55□□□□□ -1.36
VPS35-205ENST00000563984 JAMLQ86YT9 394 aa6.55□□□□□ -1.36
VPS35-205ENST00000563984 TRIM44Q96DX7 344 aaPredicted RBP6.55□□□□□ -1.36
VPS35-205ENST00000563984 PTCHD1Q96NR3 888 aa6.55□□□□□ -1.36
VPS35-205ENST00000563984 APBA2Q99767 749 aa6.55□□□□□ -1.36
VPS35-205ENST00000563984 IGSF5Q9NSI5 407 aa6.55□□□□□ -1.36
VPS35-205ENST00000563984 ACTR10Q9NZ32 417 aa6.55□□□□□ -1.36
VPS35-205ENST00000563984 CGGBP1Q9UFW8 167 aaPredicted RBP6.55□□□□□ -1.36
VPS35-205ENST00000563984 SUGT1Q9Y2Z0 365 aa6.55□□□□□ -1.36
VPS35-205ENST00000563984 A0A1W2PQ27 194 aa6.54□□□□□ -1.36
VPS35-205ENST00000563984 A0A1W2PQ64 194 aa6.54□□□□□ -1.36
VPS35-205ENST00000563984 A0A1W2PQC6 194 aa6.54□□□□□ -1.36
VPS35-205ENST00000563984 A0A1W2PQD8 194 aa6.54□□□□□ -1.36
VPS35-205ENST00000563984 AURKAO14965 403 aa6.54□□□□□ -1.36
VPS35-205ENST00000563984 TRIM13O60858 407 aa6.54□□□□□ -1.36
VPS35-205ENST00000563984 VAMP4O75379 141 aa6.54□□□□□ -1.36
VPS35-205ENST00000563984 ADRB1P08588 477 aa6.54□□□□□ -1.36
VPS35-205ENST00000563984 MMP14P50281 582 aa6.54□□□□□ -1.36
VPS35-205ENST00000563984 AMPD2Q01433 879 aa6.54□□□□□ -1.36
VPS35-205ENST00000563984 TMEM62Q0P6H9 643 aa6.54□□□□□ -1.36
VPS35-205ENST00000563984 OLFML2BQ68BL8 750 aa6.54□□□□□ -1.36
VPS35-205ENST00000563984 POMZP3Q6PJE2 187 aa6.54□□□□□ -1.36
VPS35-205ENST00000563984 FAM9BQ8IZU0 186 aa6.54□□□□□ -1.36
VPS35-205ENST00000563984 CRACR2BQ8N4Y2 399 aaPredicted RBP6.54□□□□□ -1.36
VPS35-205ENST00000563984 ZNF513Q8N8E2 541 aaPredicted RBP6.54□□□□□ -1.36
VPS35-205ENST00000563984 NUP43Q8NFH3 380 aa6.54□□□□□ -1.36
VPS35-205ENST00000563984 IMPACTQ9P2X3 320 aa6.54□□□□□ -1.36
VPS35-205ENST00000563984 PRKAG3Q9UGI9 489 aa6.54□□□□□ -1.36
VPS35-205ENST00000563984 FGRP09769 529 aa6.53□□□□□ -1.36
VPS35-205ENST00000563984 CORO7P57737 925 aa6.53□□□□□ -1.36
VPS35-205ENST00000563984 YBX1P67809 324 aaKnown RBP6.53□□□□□ -1.36
VPS35-205ENST00000563984 BVESQ8NE79 360 aa6.53□□□□□ -1.36
VPS35-205ENST00000563984 NLGN2Q8NFZ4 835 aa6.53□□□□□ -1.36
VPS35-205ENST00000563984 GMLQ99445 158 aa6.53□□□□□ -1.36
VPS35-205ENST00000563984 GCM1Q9NP62 436 aa6.53□□□□□ -1.36
VPS35-205ENST00000563984 TNFRSF12AQ9NP84 129 aa6.53□□□□□ -1.36
VPS35-205ENST00000563984 AKT3Q9Y243 479 aa6.53□□□□□ -1.36
VPS35-205ENST00000563984 C2orf71A6NGG8 1288 aa6.52□□□□□ -1.37
VPS35-205ENST00000563984 TTC36A6NLP5 189 aa6.52□□□□□ -1.37
VPS35-205ENST00000563984 L1CAMP32004 1257 aa6.52□□□□□ -1.37
VPS35-205ENST00000563984 ETFBP38117 255 aa6.52□□□□□ -1.37
VPS35-205ENST00000563984 SEPHS1P49903 392 aa6.52□□□□□ -1.37
VPS35-205ENST00000563984 MVKQ03426 396 aa6.52□□□□□ -1.37
VPS35-205ENST00000563984 DPY19L1Q2PZI1 675 aa6.52□□□□□ -1.37
VPS35-205ENST00000563984 GORABQ5T7V8 394 aa6.52□□□□□ -1.37
VPS35-205ENST00000563984 CASC1Q6TDU7 716 aa6.52□□□□□ -1.37
VPS35-205ENST00000563984 BORCS6Q96GS4 357 aa6.52□□□□□ -1.37
VPS35-205ENST00000563984 MCMBPQ9BTE3 642 aa6.52□□□□□ -1.37
VPS35-205ENST00000563984 XYLT2Q9H1B5 865 aa6.52□□□□□ -1.37
VPS35-205ENST00000563984 CNOT6Q9ULM6 557 aaKnown RBP6.52□□□□□ -1.37
VPS35-205ENST00000563984 EMC9Q9Y3B6 208 aa6.52□□□□□ -1.37
VPS35-205ENST00000563984 BACE2Q9Y5Z0 518 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms