RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 DBX1A6NMT0 343 aa7.22□□□□□ -1.25
VPS35-204ENST00000563884 FAM155AB1AL88 458 aaPredicted RBP7.22□□□□□ -1.25
VPS35-204ENST00000563884 EIF4BP23588 611 aaKnown RBP7.22□□□□□ -1.25
VPS35-204ENST00000563884 MAP2K2P36507 400 aa7.22□□□□□ -1.25
VPS35-204ENST00000563884 DAB2P98082 770 aa7.22□□□□□ -1.25
VPS35-204ENST00000563884 INPP5AQ14642 412 aa7.22□□□□□ -1.25
VPS35-204ENST00000563884 CCDC27Q2M243 656 aa7.22□□□□□ -1.25
VPS35-204ENST00000563884 LCE1DQ5T752 114 aa7.22□□□□□ -1.25
VPS35-204ENST00000563884 SV2BQ7L1I2 683 aa7.22□□□□□ -1.25
VPS35-204ENST00000563884 SLC17A8Q8NDX2 589 aa7.22□□□□□ -1.25
VPS35-204ENST00000563884 TPX2Q9ULW0 747 aaKnown RBP7.22□□□□□ -1.25
VPS35-204ENST00000563884 MAPK8IP1Q9UQF2 711 aa7.22□□□□□ -1.25
VPS35-204ENST00000563884 ARFGEF2Q9Y6D5 1785 aa7.22□□□□□ -1.25
VPS35-204ENST00000563884 CGNL1Q0VF96 1302 aa7.22□□□□□ -1.25
VPS35-204ENST00000563884 KCNA3P22001 575 aa7.21□□□□□ -1.26
VPS35-204ENST00000563884 LRFN4Q6PJG9 635 aa7.21□□□□□ -1.26
VPS35-204ENST00000563884 HDXQ7Z353 690 aa7.21□□□□□ -1.26
VPS35-204ENST00000563884 ZCRB1Q8TBF4 217 aaKnown RBP7.21□□□□□ -1.26
VPS35-204ENST00000563884 FAM84AQ96KN4 292 aa7.21□□□□□ -1.26
VPS35-204ENST00000563884 CAPNS2Q96L46 248 aa7.21□□□□□ -1.26
VPS35-204ENST00000563884 MIPEPQ99797 713 aa7.21□□□□□ -1.26
VPS35-204ENST00000563884 FAM53CQ9NYF3 392 aa7.21□□□□□ -1.26
VPS35-204ENST00000563884 PARP2Q9UGN5 583 aa7.21□□□□□ -1.26
VPS35-204ENST00000563884 CTNND2Q9UQB3 1225 aa7.21□□□□□ -1.26
VPS35-204ENST00000563884 RBBP6Q7Z6E9 1792 aaKnown RBP7.2□□□□□ -1.26
VPS35-204ENST00000563884 SLITRK5O94991 958 aa7.2□□□□□ -1.26
VPS35-204ENST00000563884 AFMP43652 599 aa7.2□□□□□ -1.26
VPS35-204ENST00000563884 ETF1P62495 437 aaKnown RBP7.2□□□□□ -1.26
VPS35-204ENST00000563884 MLANAQ16655 118 aa7.2□□□□□ -1.26
VPS35-204ENST00000563884 CDKAL1Q5VV42 579 aa7.2□□□□□ -1.26
VPS35-204ENST00000563884 TMC4Q7Z404 712 aa7.2□□□□□ -1.26
VPS35-204ENST00000563884 PLPPR2Q96GM1 343 aa7.2□□□□□ -1.26
VPS35-204ENST00000563884 HSPA12BQ96MM6 686 aa7.2□□□□□ -1.26
VPS35-204ENST00000563884 GPR101Q96P66 508 aaPredicted RBP7.2□□□□□ -1.26
VPS35-204ENST00000563884 CARS2Q9HA77 564 aaKnown RBP7.2□□□□□ -1.26
VPS35-204ENST00000563884 LMCD1Q9NZU5 365 aa7.2□□□□□ -1.26
VPS35-204ENST00000563884 TTF2Q9UNY4 1162 aaKnown RBP7.2□□□□□ -1.26
VPS35-204ENST00000563884 FXR1P51114 621 aaKnown RBP eCLIP7.19□□□□□ -1.26
VPS35-204ENST00000563884 PTPN11Q06124 597 aaPredicted RBP7.19□□□□□ -1.26
VPS35-204ENST00000563884 SFRP5Q5T4F7 317 aa7.19□□□□□ -1.26
VPS35-204ENST00000563884 WNT10AQ9GZT5 417 aa7.19□□□□□ -1.26
VPS35-204ENST00000563884 FBRSQ9HAH7 460 aa7.19□□□□□ -1.26
VPS35-204ENST00000563884 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.19□□□□□ -1.26
VPS35-204ENST00000563884 PCDH11XQ9BZA7 1347 aa7.19□□□□□ -1.26
VPS35-204ENST00000563884 PCDH11YQ9BZA8 1340 aa7.19□□□□□ -1.26
VPS35-204ENST00000563884 NRXN2Q9P2S2 1712 aa7.18□□□□□ -1.26
VPS35-204ENST00000563884 MEGF6O75095 1541 aa7.18□□□□□ -1.26
VPS35-204ENST00000563884 ZNF503-AS2A6NEH8 195 aa7.18□□□□□ -1.26
VPS35-204ENST00000563884 PRR33A8MZF0 331 aa7.18□□□□□ -1.26
VPS35-204ENST00000563884 SLBPQ14493 270 aaKnown RBP eCLIP7.18□□□□□ -1.26
VPS35-204ENST00000563884 WIPI1Q5MNZ9 446 aaPredicted RBP7.18□□□□□ -1.26
VPS35-204ENST00000563884 CYFIP1Q7L576 1253 aa7.18□□□□□ -1.26
VPS35-204ENST00000563884 PNMA8AQ86V59 439 aaPredicted RBP7.18□□□□□ -1.26
VPS35-204ENST00000563884 AMIGO3Q86WK7 504 aa7.18□□□□□ -1.26
VPS35-204ENST00000563884 MFSD4AQ8N468 514 aa7.18□□□□□ -1.26
VPS35-204ENST00000563884 ATP13A1Q9HD20 1204 aa7.18□□□□□ -1.26
VPS35-204ENST00000563884 TTC21BQ7Z4L5 1316 aa7.18□□□□□ -1.26
VPS35-204ENST00000563884 H3BS24 57 aa7.17□□□□□ -1.26
VPS35-204ENST00000563884 CTSHP09668 335 aa7.17□□□□□ -1.26
VPS35-204ENST00000563884 RFC4P35249 363 aa7.17□□□□□ -1.26
VPS35-204ENST00000563884 MESP2Q0VG99 397 aa7.17□□□□□ -1.26
VPS35-204ENST00000563884 GRM1Q13255 1194 aa7.17□□□□□ -1.26
VPS35-204ENST00000563884 NKG7Q16617 165 aa7.17□□□□□ -1.26
VPS35-204ENST00000563884 FYB2Q5VWT5 728 aa7.17□□□□□ -1.26
VPS35-204ENST00000563884 TTBK2Q6IQ55 1244 aa7.17□□□□□ -1.26
VPS35-204ENST00000563884 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.17□□□□□ -1.26
VPS35-204ENST00000563884 SMIM5Q71RC9 77 aa7.17□□□□□ -1.26
VPS35-204ENST00000563884 HID1Q8IV36 788 aa7.17□□□□□ -1.26
VPS35-204ENST00000563884 MFSD2AQ8NA29 543 aa7.17□□□□□ -1.26
VPS35-204ENST00000563884 LIN37Q96GY3 246 aaPredicted RBP7.17□□□□□ -1.26
VPS35-204ENST00000563884 KIRREL1Q96J84 757 aa7.17□□□□□ -1.26
VPS35-204ENST00000563884 TAF1DQ9H5J8 278 aaPredicted RBP7.17□□□□□ -1.26
VPS35-204ENST00000563884 SEMA3GQ9NS98 782 aa7.17□□□□□ -1.26
VPS35-204ENST00000563884 SNCAIPQ9Y6H5 919 aa7.17□□□□□ -1.26
VPS35-204ENST00000563884 CBX7O95931 251 aa7.16□□□□□ -1.26
VPS35-204ENST00000563884 ST13P50502 369 aaKnown RBP7.16□□□□□ -1.26
VPS35-204ENST00000563884 RPS26P62854 115 aaKnown RBP7.16□□□□□ -1.26
VPS35-204ENST00000563884 TAGLNQ01995 201 aaKnown RBP7.16□□□□□ -1.26
VPS35-204ENST00000563884 MPZL3Q6UWV2 235 aa7.16□□□□□ -1.26
VPS35-204ENST00000563884 LINC00116Q8NCU8 138 aa7.16□□□□□ -1.26
VPS35-204ENST00000563884 XAGE3Q8WTP9 111 aa7.16□□□□□ -1.26
VPS35-204ENST00000563884 GAL3ST3Q96A11 431 aa7.16□□□□□ -1.26
VPS35-204ENST00000563884 CNTNAP4Q9C0A0 1308 aa7.16□□□□□ -1.26
VPS35-204ENST00000563884 USP31Q70CQ4 1352 aa7.16□□□□□ -1.26
VPS35-204ENST00000563884 CD163L1Q9NR16 1453 aa7.16□□□□□ -1.26
VPS35-204ENST00000563884 TRIOBPQ9H2D6 2365 aa7.16□□□□□ -1.26
VPS35-204ENST00000563884 MYH14Q7Z406 1995 aaKnown RBP7.15□□□□□ -1.26
VPS35-204ENST00000563884 GLI1P08151 1106 aa7.15□□□□□ -1.26
VPS35-204ENST00000563884 ZNF865P0CJ78 1059 aaPredicted RBP7.15□□□□□ -1.26
VPS35-204ENST00000563884 GYS1P13807 737 aa7.15□□□□□ -1.26
VPS35-204ENST00000563884 CHRNA5P30532 468 aa7.15□□□□□ -1.26
VPS35-204ENST00000563884 CDK8P49336 464 aa7.15□□□□□ -1.26
VPS35-204ENST00000563884 PSMD2Q13200 908 aa7.15□□□□□ -1.26
VPS35-204ENST00000563884 TMEM67Q5HYA8 995 aa7.15□□□□□ -1.26
VPS35-204ENST00000563884 CYP4F22Q6NT55 531 aa7.15□□□□□ -1.26
VPS35-204ENST00000563884 ZNF746Q6NUN9 644 aaPredicted RBP7.15□□□□□ -1.26
VPS35-204ENST00000563884 LETMD1Q6P1Q0 360 aa7.15□□□□□ -1.26
VPS35-204ENST00000563884 C22orf34Q6ZV56 151 aa7.15□□□□□ -1.26
VPS35-204ENST00000563884 CNTROBQ8N137 903 aa7.15□□□□□ -1.26
VPS35-204ENST00000563884 TTLL6Q8N841 843 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms