RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 AARSD1Q9BTE6 412 aaKnown RBP5.12□□□□□ -1.59
VPS35-203ENST00000562420 OSBPL2Q9H1P3 480 aa5.12□□□□□ -1.59
VPS35-203ENST00000562420 PDLIM7Q9NR12 457 aa5.12□□□□□ -1.59
VPS35-203ENST00000562420 IMPACTQ9P2X3 320 aa5.12□□□□□ -1.59
VPS35-203ENST00000562420 OR14I1A6ND48 311 aa5.11□□□□□ -1.59
VPS35-203ENST00000562420 LRRC10BA6NIK2 292 aa5.11□□□□□ -1.59
VPS35-203ENST00000562420 TBX1O43435 398 aa5.11□□□□□ -1.59
VPS35-203ENST00000562420 FARP2O94887 1054 aaPredicted RBP5.11□□□□□ -1.59
VPS35-203ENST00000562420 SNRPB2P08579 225 aaKnown RBP5.11□□□□□ -1.59
VPS35-203ENST00000562420 PRKCAP17252 672 aa5.11□□□□□ -1.59
VPS35-203ENST00000562420 GTF2A2P52657 109 aa5.11□□□□□ -1.59
VPS35-203ENST00000562420 YBX1P67809 324 aaKnown RBP5.11□□□□□ -1.59
VPS35-203ENST00000562420 CYP4F8P98187 520 aa5.11□□□□□ -1.59
VPS35-203ENST00000562420 MVKQ03426 396 aa5.11□□□□□ -1.59
VPS35-203ENST00000562420 NFE2L2Q16236 605 aa5.11□□□□□ -1.59
VPS35-203ENST00000562420 MTERF2Q49AM1 385 aa5.11□□□□□ -1.59
VPS35-203ENST00000562420 RSPO2Q6UXX9 243 aaPredicted RBP5.11□□□□□ -1.59
VPS35-203ENST00000562420 Q8N1Y9 231 aa5.11□□□□□ -1.59
VPS35-203ENST00000562420 FBXO15Q8NCQ5 510 aaPredicted RBP5.11□□□□□ -1.59
VPS35-203ENST00000562420 KREMEN2Q8NCW0 462 aa5.11□□□□□ -1.59
VPS35-203ENST00000562420 NUP43Q8NFH3 380 aa5.11□□□□□ -1.59
VPS35-203ENST00000562420 KCTD13Q8WZ19 329 aa5.11□□□□□ -1.59
VPS35-203ENST00000562420 SLC26A8Q96RN1 970 aa5.11□□□□□ -1.59
VPS35-203ENST00000562420 SPATA9Q9BWV2 254 aa5.11□□□□□ -1.59
VPS35-203ENST00000562420 EPB41L4BQ9H329 900 aa5.11□□□□□ -1.59
VPS35-203ENST00000562420 ZNF552Q9H707 407 aaPredicted RBP5.11□□□□□ -1.59
VPS35-203ENST00000562420 ARHGEF4Q9NR80 690 aa5.11□□□□□ -1.59
VPS35-203ENST00000562420 SNTG2Q9NY99 539 aa5.11□□□□□ -1.59
VPS35-203ENST00000562420 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP5.11□□□□□ -1.59
VPS35-203ENST00000562420 NPFFR2Q9Y5X5 522 aa5.11□□□□□ -1.59
VPS35-203ENST00000562420 TRAV20A0A0B4J274 112 aa5.1□□□□□ -1.59
VPS35-203ENST00000562420 NPHS1O60500 1241 aa5.1□□□□□ -1.59
VPS35-203ENST00000562420 SEMA7AO75326 666 aa5.1□□□□□ -1.59
VPS35-203ENST00000562420 PLS3P13797 630 aa5.1□□□□□ -1.59
VPS35-203ENST00000562420 MESP2Q0VG99 397 aa5.1□□□□□ -1.59
VPS35-203ENST00000562420 IFRD2Q12894 506 aaPredicted RBP5.1□□□□□ -1.59
VPS35-203ENST00000562420 CBX2Q14781 532 aaPredicted RBP5.1□□□□□ -1.59
VPS35-203ENST00000562420 NR1I3Q14994 352 aa5.1□□□□□ -1.59
VPS35-203ENST00000562420 DPH6Q7L8W6 267 aa5.1□□□□□ -1.59
VPS35-203ENST00000562420 FAM84AQ96KN4 292 aa5.1□□□□□ -1.59
VPS35-203ENST00000562420 PPP1R16BQ96T49 567 aa5.1□□□□□ -1.59
VPS35-203ENST00000562420 A0A1W2PQ27 194 aa5.09□□□□□ -1.59
VPS35-203ENST00000562420 A0A1W2PQ64 194 aa5.09□□□□□ -1.59
VPS35-203ENST00000562420 A0A1W2PQC6 194 aa5.09□□□□□ -1.59
VPS35-203ENST00000562420 A0A1W2PQD8 194 aa5.09□□□□□ -1.59
VPS35-203ENST00000562420 C7orf72A4D263 438 aa5.09□□□□□ -1.59
VPS35-203ENST00000562420 MEFVO15553 781 aaPredicted RBP5.09□□□□□ -1.59
VPS35-203ENST00000562420 ADCY3O60266 1144 aa5.09□□□□□ -1.59
VPS35-203ENST00000562420 CYBBP04839 570 aa5.09□□□□□ -1.59
VPS35-203ENST00000562420 MPOP05164 745 aa5.09□□□□□ -1.59
VPS35-203ENST00000562420 LTBRP36941 435 aa5.09□□□□□ -1.59
VPS35-203ENST00000562420 MLANAQ16655 118 aa5.09□□□□□ -1.59
VPS35-203ENST00000562420 PRR23BQ6ZRT6 265 aa5.09□□□□□ -1.59
VPS35-203ENST00000562420 ZBTB38Q8NAP3 1195 aaPredicted RBP5.09□□□□□ -1.59
VPS35-203ENST00000562420 TMEM145Q8NBT3 493 aa5.09□□□□□ -1.59
VPS35-203ENST00000562420 NETO2Q8NC67 525 aa5.09□□□□□ -1.59
VPS35-203ENST00000562420 DIO2Q92813 273 aa5.09□□□□□ -1.59
VPS35-203ENST00000562420 DNAJC2Q99543 621 aaKnown RBP5.09□□□□□ -1.59
VPS35-203ENST00000562420 ZFYVE21Q9BQ24 234 aa5.09□□□□□ -1.59
VPS35-203ENST00000562420 MTA3Q9BTC8 594 aa5.09□□□□□ -1.59
VPS35-203ENST00000562420 LGR4Q9BXB1 951 aa5.09□□□□□ -1.59
VPS35-203ENST00000562420 NSUN3Q9H649 340 aaKnown RBP5.09□□□□□ -1.59
VPS35-203ENST00000562420 DCP1AQ9NPI6 582 aaPredicted RBP5.09□□□□□ -1.59
VPS35-203ENST00000562420 CLEC1BQ9P126 229 aa5.09□□□□□ -1.59
VPS35-203ENST00000562420 DBX1A6NMT0 343 aa5.08□□□□□ -1.6
VPS35-203ENST00000562420 DLX3O60479 287 aa5.08□□□□□ -1.6
VPS35-203ENST00000562420 MSL3P1P0C860 447 aa5.08□□□□□ -1.6
VPS35-203ENST00000562420 MED14OSP0DP75 135 aa5.08□□□□□ -1.6
VPS35-203ENST00000562420 GLI4P10075 376 aa5.08□□□□□ -1.6
VPS35-203ENST00000562420 GRIA2P42262 883 aa5.08□□□□□ -1.6
VPS35-203ENST00000562420 SSRP1Q08945 709 aaKnown RBP5.08□□□□□ -1.6
VPS35-203ENST00000562420 FBLN7Q53RD9 439 aa5.08□□□□□ -1.6
VPS35-203ENST00000562420 ADGRF1Q5T601 910 aa5.08□□□□□ -1.6
VPS35-203ENST00000562420 PAQR3Q6TCH7 311 aa5.08□□□□□ -1.6
VPS35-203ENST00000562420 SPATC1Q76KD6 591 aa5.08□□□□□ -1.6
VPS35-203ENST00000562420 CABP7Q86V35 215 aa5.08□□□□□ -1.6
VPS35-203ENST00000562420 RIOX2Q8IUF8 465 aa5.08□□□□□ -1.6
VPS35-203ENST00000562420 PPIL6Q8IXY8 311 aa5.08□□□□□ -1.6
VPS35-203ENST00000562420 LZTR1Q8N653 840 aa5.08□□□□□ -1.6
VPS35-203ENST00000562420 SRPK1Q96SB4 655 aaKnown RBP5.08□□□□□ -1.6
VPS35-203ENST00000562420 IER2Q9BTL4 223 aa5.08□□□□□ -1.6
VPS35-203ENST00000562420 GPRC5CQ9NQ84 441 aa5.08□□□□□ -1.6
VPS35-203ENST00000562420 GPR27Q9NS67 375 aa5.08□□□□□ -1.6
VPS35-203ENST00000562420 CCDC163A0A0D9SF12 145 aa5.07□□□□□ -1.6
VPS35-203ENST00000562420 TEX51A0A1B0GUA7 166 aa5.07□□□□□ -1.6
VPS35-203ENST00000562420 FAM221BA6H8Z2 402 aa5.07□□□□□ -1.6
VPS35-203ENST00000562420 MYO1BO43795 1136 aa5.07□□□□□ -1.6
VPS35-203ENST00000562420 TSPAN15O95858 294 aa5.07□□□□□ -1.6
VPS35-203ENST00000562420 DBHP09172 617 aa5.07□□□□□ -1.6
VPS35-203ENST00000562420 PABPC1P11940 636 aaKnown RBP5.07□□□□□ -1.6
VPS35-203ENST00000562420 GLDCP23378 1020 aa5.07□□□□□ -1.6
VPS35-203ENST00000562420 PDE6BP35913 854 aa5.07□□□□□ -1.6
VPS35-203ENST00000562420 ECI1P42126 302 aa5.07□□□□□ -1.6
VPS35-203ENST00000562420 KCNJ6P48051 423 aa5.07□□□□□ -1.6
VPS35-203ENST00000562420 MAPKAPK2P49137 400 aa5.07□□□□□ -1.6
VPS35-203ENST00000562420 RPL11P62913 178 aaKnown RBP5.07□□□□□ -1.6
VPS35-203ENST00000562420 MBLAC2Q68D91 279 aa5.07□□□□□ -1.6
VPS35-203ENST00000562420 NSMFQ6X4W1 530 aa5.07□□□□□ -1.6
VPS35-203ENST00000562420 CPNE8Q86YQ8 564 aa5.07□□□□□ -1.6
VPS35-203ENST00000562420 CCDC103Q8IW40 242 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms