RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 HRKO00198 91 aa2.38□□□□□ -2.03
USP3-209ENST00000558925 RGS13O14921 159 aa2.38□□□□□ -2.03
USP3-209ENST00000558925 PPP1R12AO14974 1030 aaPredicted RBP2.38□□□□□ -2.03
USP3-209ENST00000558925 CBFA2T2O43439 604 aa2.38□□□□□ -2.03
USP3-209ENST00000558925 ASMTLO95671 621 aa2.38□□□□□ -2.03
USP3-209ENST00000558925 CST3P01034 146 aaPredicted RBP2.38□□□□□ -2.03
USP3-209ENST00000558925 EPHX1P07099 455 aa2.38□□□□□ -2.03
USP3-209ENST00000558925 CDK11BP21127 795 aaKnown RBP2.38□□□□□ -2.03
USP3-209ENST00000558925 L1CAMP32004 1257 aa2.38□□□□□ -2.03
USP3-209ENST00000558925 PMS1P54277 932 aaKnown RBP2.38□□□□□ -2.03
USP3-209ENST00000558925 SLURP1P55000 103 aa2.38□□□□□ -2.03
USP3-209ENST00000558925 YBX1P67809 324 aaKnown RBP2.38□□□□□ -2.03
USP3-209ENST00000558925 HNRNPUQ00839 825 aaKnown RBP eCLIP2.38□□□□□ -2.03
USP3-209ENST00000558925 SLC7A5Q01650 507 aa2.38□□□□□ -2.03
USP3-209ENST00000558925 TEKQ02763 1124 aa2.38□□□□□ -2.03
USP3-209ENST00000558925 MLECQ14165 292 aa2.38□□□□□ -2.03
USP3-209ENST00000558925 CBX2Q14781 532 aaPredicted RBP2.38□□□□□ -2.03
USP3-209ENST00000558925 NCAPHQ15003 741 aa2.38□□□□□ -2.03
USP3-209ENST00000558925 SNX17Q15036 470 aa2.38□□□□□ -2.03
USP3-209ENST00000558925 PTPROQ16827 1216 aa2.38□□□□□ -2.03
USP3-209ENST00000558925 ZNF827Q17R98 1081 aa2.38□□□□□ -2.03
USP3-209ENST00000558925 INTS3Q68E01 1043 aaKnown RBP2.38□□□□□ -2.03
USP3-209ENST00000558925 SLC6A19Q695T7 634 aa2.38□□□□□ -2.03
USP3-209ENST00000558925 EEPD1Q7L9B9 569 aa2.38□□□□□ -2.03
USP3-209ENST00000558925 FILIP1Q7Z7B0 1213 aa2.38□□□□□ -2.03
USP3-209ENST00000558925 KIAA0907Q7Z7F0 614 aaPredicted RBP2.38□□□□□ -2.03
USP3-209ENST00000558925 TSPYL5Q86VY4 417 aaPredicted RBP2.38□□□□□ -2.03
USP3-209ENST00000558925 HOMER1Q86YM7 354 aa2.38□□□□□ -2.03
USP3-209ENST00000558925 SLFN12Q8IYM2 578 aa2.38□□□□□ -2.03
USP3-209ENST00000558925 JMYQ8N9B5 988 aa2.38□□□□□ -2.03
USP3-209ENST00000558925 ST13P5Q8NFI4 369 aaPredicted RBP2.38□□□□□ -2.03
USP3-209ENST00000558925 DNAJB8Q8NHS0 232 aa2.38□□□□□ -2.03
USP3-209ENST00000558925 PIWIL2Q8TC59 973 aaKnown RBP2.38□□□□□ -2.03
USP3-209ENST00000558925 THAP3Q8WTV1 239 aaPredicted RBP2.38□□□□□ -2.03
USP3-209ENST00000558925 MZB1Q8WU39 189 aa2.38□□□□□ -2.03
USP3-209ENST00000558925 PPP1R13LQ8WUF5 828 aa2.38□□□□□ -2.03
USP3-209ENST00000558925 CYB5D2Q8WUJ1 264 aa2.38□□□□□ -2.03
USP3-209ENST00000558925 APPBP2Q92624 585 aa2.38□□□□□ -2.03
USP3-209ENST00000558925 EXOC2Q96KP1 924 aa2.38□□□□□ -2.03
USP3-209ENST00000558925 PWWP2AQ96N64 755 aa2.38□□□□□ -2.03
USP3-209ENST00000558925 SPATA9Q9BWV2 254 aa2.38□□□□□ -2.03
USP3-209ENST00000558925 FAM126AQ9BYI3 521 aaPredicted RBP2.38□□□□□ -2.03
USP3-209ENST00000558925 PHAXQ9H814 394 aaKnown RBP2.38□□□□□ -2.03
USP3-209ENST00000558925 ARHGEF4Q9NR80 690 aa2.38□□□□□ -2.03
USP3-209ENST00000558925 IFT57Q9NWB7 429 aa2.38□□□□□ -2.03
USP3-209ENST00000558925 SIRT5Q9NXA8 310 aa2.38□□□□□ -2.03
USP3-209ENST00000558925 SUCOQ9UBS9 1254 aaKnown RBP2.38□□□□□ -2.03
USP3-209ENST00000558925 CNOT11Q9UKZ1 510 aaKnown RBP2.38□□□□□ -2.03
USP3-209ENST00000558925 ZNF281Q9Y2X9 895 aa2.38□□□□□ -2.03
USP3-209ENST00000558925 CD2APQ9Y5K6 639 aa2.38□□□□□ -2.03
USP3-209ENST00000558925 A0A1W2PQU0 124 aa2.37□□□□□ -2.03
USP3-209ENST00000558925 C1QTNF3-AMACRE9PGA6 284 aa2.37□□□□□ -2.03
USP3-209ENST00000558925 SHOXO15266 292 aa2.37□□□□□ -2.03
USP3-209ENST00000558925 LRRN2O75325 713 aa2.37□□□□□ -2.03
USP3-209ENST00000558925 USP2O75604 605 aaPredicted RBP2.37□□□□□ -2.03
USP3-209ENST00000558925 C6P13671 934 aa2.37□□□□□ -2.03
USP3-209ENST00000558925 NCLP19338 710 aaKnown RBP2.37□□□□□ -2.03
USP3-209ENST00000558925 GBP1P32455 592 aa2.37□□□□□ -2.03
USP3-209ENST00000558925 ACVRL1P37023 503 aa2.37□□□□□ -2.03
USP3-209ENST00000558925 GRIA2P42262 883 aa2.37□□□□□ -2.03
USP3-209ENST00000558925 YARSP54577 528 aaKnown RBP2.37□□□□□ -2.03
USP3-209ENST00000558925 GYS2P54840 703 aa2.37□□□□□ -2.03
USP3-209ENST00000558925 NCKAP1LP55160 1127 aa2.37□□□□□ -2.03
USP3-209ENST00000558925 HNRNPA0Q13151 305 aaKnown RBP2.37□□□□□ -2.03
USP3-209ENST00000558925 SNW1Q13573 536 aaKnown RBP2.37□□□□□ -2.03
USP3-209ENST00000558925 KIR3DS1Q14943 382 aa2.37□□□□□ -2.03
USP3-209ENST00000558925 SV2CQ496J9 727 aa2.37□□□□□ -2.03
USP3-209ENST00000558925 FAM209AQ5JX71 171 aa2.37□□□□□ -2.03
USP3-209ENST00000558925 ZNF227Q86WZ6 799 aa2.37□□□□□ -2.03
USP3-209ENST00000558925 ANKRD13AQ8IZ07 590 aa2.37□□□□□ -2.03
USP3-209ENST00000558925 ZNF513Q8N8E2 541 aaPredicted RBP2.37□□□□□ -2.03
USP3-209ENST00000558925 ADCY4Q8NFM4 1077 aa2.37□□□□□ -2.03
USP3-209ENST00000558925 PPP1R14AQ96A00 147 aa2.37□□□□□ -2.03
USP3-209ENST00000558925 CCDC74BQ96LY2 380 aa2.37□□□□□ -2.03
USP3-209ENST00000558925 RBM15Q96T37 977 aaKnown RBP eCLIP2.37□□□□□ -2.03
USP3-209ENST00000558925 HAUS7Q99871 368 aa2.37□□□□□ -2.03
USP3-209ENST00000558925 GPR62Q9BZJ7 368 aa2.37□□□□□ -2.03
USP3-209ENST00000558925 MKRN2Q9H000 416 aaKnown RBP2.37□□□□□ -2.03
USP3-209ENST00000558925 KLHL25Q9H0H3 589 aa2.37□□□□□ -2.03
USP3-209ENST00000558925 SLITRK6Q9H5Y7 841 aa2.37□□□□□ -2.03
USP3-209ENST00000558925 MINPP1Q9UNW1 487 aa2.37□□□□□ -2.03
USP3-209ENST00000558925 ZNF451Q9Y4E5 1061 aa2.37□□□□□ -2.03
USP3-209ENST00000558925 PCDHA5Q9Y5H7 936 aa2.37□□□□□ -2.03
USP3-209ENST00000558925 COL4A3BPQ9Y5P4 624 aa2.37□□□□□ -2.03
USP3-209ENST00000558925 SLC12A7Q9Y666 1083 aa2.37□□□□□ -2.03
USP3-209ENST00000558925 SHISA3A0PJX4 238 aa2.36□□□□□ -2.03
USP3-209ENST00000558925 BLACEA4D250 179 aa2.36□□□□□ -2.03
USP3-209ENST00000558925 DNAJC6O75061 913 aa2.36□□□□□ -2.03
USP3-209ENST00000558925 CLEC3AO75596 197 aa2.36□□□□□ -2.03
USP3-209ENST00000558925 RAPGEF3O95398 923 aa2.36□□□□□ -2.03
USP3-209ENST00000558925 ITGAVP06756 1048 aa2.36□□□□□ -2.03
USP3-209ENST00000558925 HMGB1P09429 215 aaKnown RBP2.36□□□□□ -2.03
USP3-209ENST00000558925 ZNF20P17024 532 aa2.36□□□□□ -2.03
USP3-209ENST00000558925 FBLN1P23142 703 aa2.36□□□□□ -2.03
USP3-209ENST00000558925 LTKP29376 864 aa2.36□□□□□ -2.03
USP3-209ENST00000558925 KCNC1P48547 511 aa2.36□□□□□ -2.03
USP3-209ENST00000558925 MASP1P48740 699 aa2.36□□□□□ -2.03
USP3-209ENST00000558925 PPP2R2AP63151 447 aa2.36□□□□□ -2.03
USP3-209ENST00000558925 AMPD3Q01432 767 aa2.36□□□□□ -2.03
USP3-209ENST00000558925 VWA3BQ502W6 1294 aa2.36□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms