RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 DCP1AQ9NPI6 582 aaPredicted RBP18.15■□□□□ 0.5
SHMT2-232ENST00000557487 TCP11L1Q9NUJ3 509 aa18.15■□□□□ 0.5
SHMT2-232ENST00000557487 BAZ2AQ9UIF9 1905 aaKnown RBP18.15■□□□□ 0.5
SHMT2-232ENST00000557487 TSPY2A6NKD2 308 aa18.15■□□□□ 0.5
SHMT2-232ENST00000557487 OPA1O60313 960 aa18.15■□□□□ 0.5
SHMT2-232ENST00000557487 LCA5LO95447 670 aa18.15■□□□□ 0.5
SHMT2-232ENST00000557487 FGFR1OPO95684 399 aaKnown RBP18.15■□□□□ 0.5
SHMT2-232ENST00000557487 CPP00450 1065 aa18.15■□□□□ 0.5
SHMT2-232ENST00000557487 TNFRSF8P28908 595 aa18.15■□□□□ 0.5
SHMT2-232ENST00000557487 GYG1P46976 350 aa18.15■□□□□ 0.5
SHMT2-232ENST00000557487 GRM4Q14833 912 aa18.15■□□□□ 0.5
SHMT2-232ENST00000557487 INTS5Q6P9B9 1019 aaKnown RBP18.15■□□□□ 0.5
SHMT2-232ENST00000557487 CNOT6LQ96LI5 555 aaKnown RBP18.15■□□□□ 0.5
SHMT2-232ENST00000557487 LACRTQ9GZZ8 138 aa18.15■□□□□ 0.5
SHMT2-232ENST00000557487 JADE2Q9NQC1 790 aa18.15■□□□□ 0.5
SHMT2-232ENST00000557487 CCNL1Q9UK58 526 aaPredicted RBP18.15■□□□□ 0.5
SHMT2-232ENST00000557487 ZNF652Q9Y2D9 606 aa18.15■□□□□ 0.5
SHMT2-232ENST00000557487 SRGAP2O75044 1071 aa18.14■□□□□ 0.49
SHMT2-232ENST00000557487 GGCXP38435 758 aa18.14■□□□□ 0.49
SHMT2-232ENST00000557487 MTIF2P46199 727 aaKnown RBP18.14■□□□□ 0.49
SHMT2-232ENST00000557487 PPFIA1Q13136 1202 aa18.14■□□□□ 0.49
SHMT2-232ENST00000557487 SF3B3Q15393 1217 aaKnown RBP18.14■□□□□ 0.49
SHMT2-232ENST00000557487 TTC31Q49AM3 519 aaPredicted RBP18.14■□□□□ 0.49
SHMT2-232ENST00000557487 CNNM4Q6P4Q7 775 aa18.14■□□□□ 0.49
SHMT2-232ENST00000557487 NSUN4Q96CB9 384 aaKnown RBP18.14■□□□□ 0.49
SHMT2-232ENST00000557487 CAPZA3Q96KX2 299 aa18.14■□□□□ 0.49
SHMT2-232ENST00000557487 ALS2CR12Q96Q35 445 aa18.14■□□□□ 0.49
SHMT2-232ENST00000557487 NOC4LQ9BVI4 516 aaKnown RBP18.14■□□□□ 0.49
SHMT2-232ENST00000557487 AGPAT5Q9NUQ2 364 aa18.14■□□□□ 0.49
SHMT2-232ENST00000557487 PLAGL2Q9UPG8 496 aa18.14■□□□□ 0.49
SHMT2-232ENST00000557487 FAM205AQ6ZU69 1335 aa18.14■□□□□ 0.49
SHMT2-232ENST00000557487 GOLGA6CA6NDK9 693 aa18.13■□□□□ 0.49
SHMT2-232ENST00000557487 RASSF10A6NK89 507 aa18.13■□□□□ 0.49
SHMT2-232ENST00000557487 SMIM22K7EJ46 135 aa18.13■□□□□ 0.49
SHMT2-232ENST00000557487 GOLGA6DP0CG33 693 aa18.13■□□□□ 0.49
SHMT2-232ENST00000557487 EPB41P11171 864 aaKnown RBP18.13■□□□□ 0.49
SHMT2-232ENST00000557487 GLE1Q53GS7 698 aaKnown RBP18.13■□□□□ 0.49
SHMT2-232ENST00000557487 ALS2CLQ60I27 953 aa18.13■□□□□ 0.49
SHMT2-232ENST00000557487 RCSD1Q6JBY9 416 aa18.13■□□□□ 0.49
SHMT2-232ENST00000557487 EMBQ6PCB8 327 aa18.13■□□□□ 0.49
SHMT2-232ENST00000557487 FOXR2Q6PJQ5 311 aa18.13■□□□□ 0.49
SHMT2-232ENST00000557487 EDEM3Q9BZQ6 932 aa18.13■□□□□ 0.49
SHMT2-232ENST00000557487 GOLGA6AQ9NYA3 693 aa18.13■□□□□ 0.49
SHMT2-232ENST00000557487 RNF14Q9UBS8 474 aa18.13■□□□□ 0.49
SHMT2-232ENST00000557487 PCDHA6Q9UN73 950 aa18.13■□□□□ 0.49
SHMT2-232ENST00000557487 NIP7Q9Y221 180 aaKnown RBP eCLIP18.13■□□□□ 0.49
SHMT2-232ENST00000557487 PCDHA8Q9Y5H6 950 aa18.13■□□□□ 0.49
SHMT2-232ENST00000557487 NOP2P46087 812 aaKnown RBP18.13■□□□□ 0.49
SHMT2-232ENST00000557487 NNTQ13423 1086 aa18.13■□□□□ 0.49
SHMT2-232ENST00000557487 FBXO33Q7Z6M2 555 aa18.13■□□□□ 0.49
SHMT2-232ENST00000557487 CCDC84Q86UT8 332 aaPredicted RBP18.13■□□□□ 0.49
SHMT2-232ENST00000557487 PCMTD1Q96MG8 357 aaPredicted RBP18.13■□□□□ 0.49
SHMT2-232ENST00000557487 TRIM9Q9C026 710 aa18.13■□□□□ 0.49
SHMT2-232ENST00000557487 SH2D4AQ9H788 454 aa18.13■□□□□ 0.49
SHMT2-232ENST00000557487 TSKSQ9UJT2 592 aa18.13■□□□□ 0.49
SHMT2-232ENST00000557487 HYOU1Q9Y4L1 999 aa18.13■□□□□ 0.49
SHMT2-232ENST00000557487 MAST2Q6P0Q8 1798 aa18.12■□□□□ 0.49
SHMT2-232ENST00000557487 A0A087WUV0 522 aaPredicted RBP18.12■□□□□ 0.49
SHMT2-232ENST00000557487 AGPSO00116 658 aa18.12■□□□□ 0.49
SHMT2-232ENST00000557487 EPHB4P54760 987 aa18.12■□□□□ 0.49
SHMT2-232ENST00000557487 PDE4DQ08499 809 aa18.12■□□□□ 0.49
SHMT2-232ENST00000557487 R3HDM1Q15032 1099 aaKnown RBP18.12■□□□□ 0.49
SHMT2-232ENST00000557487 SLC15A2Q16348 729 aa18.12■□□□□ 0.49
SHMT2-232ENST00000557487 MIIPQ5JXC2 388 aa18.12■□□□□ 0.49
SHMT2-232ENST00000557487 FOXR1Q6PIV2 292 aa18.12■□□□□ 0.49
SHMT2-232ENST00000557487 KRT25Q7Z3Z0 450 aa18.12■□□□□ 0.49
SHMT2-232ENST00000557487 CABP7Q86V35 215 aa18.12■□□□□ 0.49
SHMT2-232ENST00000557487 CREG2Q8IUH2 290 aa18.12■□□□□ 0.49
SHMT2-232ENST00000557487 FAM84BQ96KN1 310 aaPredicted RBP18.12■□□□□ 0.49
SHMT2-232ENST00000557487 SH3GL2Q99962 352 aa18.12■□□□□ 0.49
SHMT2-232ENST00000557487 BARHL2Q9NY43 387 aa18.12■□□□□ 0.49
SHMT2-232ENST00000557487 STK32BQ9NY57 414 aa18.12■□□□□ 0.49
SHMT2-232ENST00000557487 LOC102724428A0A0B4J2F2 783 aa18.11■□□□□ 0.49
SHMT2-232ENST00000557487 RCCD1A6NED2 376 aa18.11■□□□□ 0.49
SHMT2-232ENST00000557487 PDE2AO00408 941 aaPredicted RBP18.11■□□□□ 0.49
SHMT2-232ENST00000557487 SIK1P57059 783 aa18.11■□□□□ 0.49
SHMT2-232ENST00000557487 FAM47AQ5JRC9 791 aa18.11■□□□□ 0.49
SHMT2-232ENST00000557487 ZNF384Q8TF68 577 aa18.11■□□□□ 0.49
SHMT2-232ENST00000557487 AKT1S1Q96B36 256 aa18.11■□□□□ 0.49
SHMT2-232ENST00000557487 IFIH1Q9BYX4 1025 aaKnown RBP18.11■□□□□ 0.49
SHMT2-232ENST00000557487 KIAA1551Q9HCM1 1747 aa18.11■□□□□ 0.49
SHMT2-232ENST00000557487 FLT1P17948 1338 aa18.11■□□□□ 0.49
SHMT2-232ENST00000557487 RGL2O15211 777 aa18.11■□□□□ 0.49
SHMT2-232ENST00000557487 PJA2O43164 708 aa18.11■□□□□ 0.49
SHMT2-232ENST00000557487 NMT2O60551 498 aa18.11■□□□□ 0.49
SHMT2-232ENST00000557487 OR52Z1P0C646 297 aa18.11■□□□□ 0.49
SHMT2-232ENST00000557487 CRKLP46109 303 aaKnown RBP18.11■□□□□ 0.49
SHMT2-232ENST00000557487 APBA1Q02410 837 aa18.11■□□□□ 0.49
SHMT2-232ENST00000557487 CCDC96Q2M329 555 aa18.11■□□□□ 0.49
SHMT2-232ENST00000557487 ANKRD40Q6AI12 368 aa18.11■□□□□ 0.49
SHMT2-232ENST00000557487 CLEC4GQ6UXB4 293 aa18.11■□□□□ 0.49
SHMT2-232ENST00000557487 PNMA1Q8ND90 353 aa18.11■□□□□ 0.49
SHMT2-232ENST00000557487 IPO4Q8TEX9 1081 aaKnown RBP18.11■□□□□ 0.49
SHMT2-232ENST00000557487 CAVIN3Q969G5 261 aa18.11■□□□□ 0.49
SHMT2-232ENST00000557487 TMEM60Q9H2L4 133 aa18.11■□□□□ 0.49
SHMT2-232ENST00000557487 RNF216Q9NWF9 866 aaPredicted RBP18.11■□□□□ 0.49
SHMT2-232ENST00000557487 PCDHA13Q9Y5I0 950 aa18.11■□□□□ 0.49
SHMT2-232ENST00000557487 MACROD2A1Z1Q3 448 aa18.1■□□□□ 0.49
SHMT2-232ENST00000557487 PLCG1P19174 1290 aa18.1■□□□□ 0.49
SHMT2-232ENST00000557487 MECOMQ03112 1051 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 382.5 ms