RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 SPTBN5Q9NRC6 3674 aaKnown RBP12.44□□□□□ -0.42
SHMT2-215ENST00000554656 TMEM265A0A087WTH1 108 aa12.44□□□□□ -0.42
SHMT2-215ENST00000554656 GRXCR1A8MXD5 290 aa12.44□□□□□ -0.42
SHMT2-215ENST00000554656 DYNC1LI2O43237 492 aaPredicted RBP12.44□□□□□ -0.42
SHMT2-215ENST00000554656 SNHG28P0DPA3 235 aa12.44□□□□□ -0.42
SHMT2-215ENST00000554656 ACRP10323 421 aa12.44□□□□□ -0.42
SHMT2-215ENST00000554656 PDE4AP27815 886 aa12.44□□□□□ -0.42
SHMT2-215ENST00000554656 ALDH5A1P51649 535 aaPredicted RBP12.44□□□□□ -0.42
SHMT2-215ENST00000554656 PSMC6P62333 389 aa12.44□□□□□ -0.42
SHMT2-215ENST00000554656 ZNF543Q08ER8 600 aa12.44□□□□□ -0.42
SHMT2-215ENST00000554656 PPIGQ13427 754 aaKnown RBP eCLIP12.44□□□□□ -0.423e-10■□□□□ 10.6
SHMT2-215ENST00000554656 GRIN2CQ14957 1233 aa12.44□□□□□ -0.42
SHMT2-215ENST00000554656 AKNAD1Q5T1N1 836 aa12.44□□□□□ -0.42
SHMT2-215ENST00000554656 VWCEQ96DN2 955 aa12.44□□□□□ -0.42
SHMT2-215ENST00000554656 VTA1Q9NP79 307 aa12.44□□□□□ -0.42
SHMT2-215ENST00000554656 TANC1Q9C0D5 1861 aa12.44□□□□□ -0.42
SHMT2-215ENST00000554656 KIAA1217Q5T5P2 1943 aa12.43□□□□□ -0.42
SHMT2-215ENST00000554656 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.43□□□□□ -0.42
SHMT2-215ENST00000554656 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.43□□□□□ -0.42
SHMT2-215ENST00000554656 PBX2P40425 430 aa12.43□□□□□ -0.42
SHMT2-215ENST00000554656 ITGA7Q13683 1181 aa12.43□□□□□ -0.42
SHMT2-215ENST00000554656 IQSEC1Q6DN90 963 aa12.43□□□□□ -0.42
SHMT2-215ENST00000554656 ZNF365Q70YC5 407 aa12.43□□□□□ -0.42
SHMT2-215ENST00000554656 TICAM2Q86XR7 235 aa12.43□□□□□ -0.42
SHMT2-215ENST00000554656 PLEKHM2Q8IWE5 1019 aa12.43□□□□□ -0.42
SHMT2-215ENST00000554656 USP38Q8NB14 1042 aa12.43□□□□□ -0.42
SHMT2-215ENST00000554656 BACH2Q9BYV9 841 aa12.43□□□□□ -0.42
SHMT2-215ENST00000554656 AP5M1Q9H0R1 490 aa12.43□□□□□ -0.42
SHMT2-215ENST00000554656 TRPV6Q9H1D0 765 aa12.43□□□□□ -0.42
SHMT2-215ENST00000554656 CPVLQ9H3G5 476 aa12.43□□□□□ -0.42
SHMT2-215ENST00000554656 TTC28Q96AY4 2481 aa12.43□□□□□ -0.42
SHMT2-215ENST00000554656 RBM47A0AV96 593 aaKnown RBP12.42□□□□□ -0.42
SHMT2-215ENST00000554656 TRIM6-TRIM34B2RNG4 842 aa12.42□□□□□ -0.42
SHMT2-215ENST00000554656 TLR3O15455 904 aaKnown RBP12.42□□□□□ -0.42
SHMT2-215ENST00000554656 B4GALT4O60513 344 aa12.42□□□□□ -0.42
SHMT2-215ENST00000554656 FOSL2P15408 326 aa12.42□□□□□ -0.42
SHMT2-215ENST00000554656 SDSP20132 328 aa12.42□□□□□ -0.42
SHMT2-215ENST00000554656 DUSP28Q4G0W2 176 aa12.42□□□□□ -0.42
SHMT2-215ENST00000554656 KIAA1211Q6ZU35 1233 aa12.42□□□□□ -0.42
SHMT2-215ENST00000554656 RILPL2Q969X0 211 aa12.42□□□□□ -0.42
SHMT2-215ENST00000554656 ZKSCAN3Q9BRR0 538 aa12.42□□□□□ -0.42
SHMT2-215ENST00000554656 NOC4LQ9BVI4 516 aaKnown RBP12.42□□□□□ -0.42
SHMT2-215ENST00000554656 PBX4Q9BYU1 374 aa12.42□□□□□ -0.42
SHMT2-215ENST00000554656 WNT8AQ9H1J5 351 aa12.42□□□□□ -0.42
SHMT2-215ENST00000554656 HIPK3Q9H422 1215 aa12.42□□□□□ -0.42
SHMT2-215ENST00000554656 CXXC1Q9P0U4 656 aaPredicted RBP12.42□□□□□ -0.42
SHMT2-215ENST00000554656 Q9Y3F1 56 aa12.42□□□□□ -0.42
SHMT2-215ENST00000554656 WDR19Q8NEZ3 1342 aa12.41□□□□□ -0.42
SHMT2-215ENST00000554656 PTPRSQ13332 1948 aa12.41□□□□□ -0.42
SHMT2-215ENST00000554656 REV3LO60673 3130 aa12.41□□□□□ -0.42
SHMT2-215ENST00000554656 PTPDC1A2A3K4 754 aa12.41□□□□□ -0.42
SHMT2-215ENST00000554656 CABYRO75952 493 aa12.41□□□□□ -0.42
SHMT2-215ENST00000554656 EDNRBP24530 442 aa12.41□□□□□ -0.42
SHMT2-215ENST00000554656 MFSD6Q6ZSS7 791 aa12.41□□□□□ -0.42
SHMT2-215ENST00000554656 SKAP1Q86WV1 359 aa12.41□□□□□ -0.42
SHMT2-215ENST00000554656 TMEM199Q8N511 208 aa12.41□□□□□ -0.42
SHMT2-215ENST00000554656 PPP1R13LQ8WUF5 828 aa12.41□□□□□ -0.42
SHMT2-215ENST00000554656 TIFAQ96CG3 184 aa12.41□□□□□ -0.42
SHMT2-215ENST00000554656 WDR11Q9BZH6 1224 aa12.41□□□□□ -0.42
SHMT2-215ENST00000554656 OSBPL3Q9H4L5 887 aa12.41□□□□□ -0.42
SHMT2-215ENST00000554656 ZNF576Q9H609 170 aa12.41□□□□□ -0.42
SHMT2-215ENST00000554656 IL23AQ9NPF7 189 aa12.41□□□□□ -0.42
SHMT2-215ENST00000554656 TET1Q8NFU7 2136 aa12.41□□□□□ -0.42
SHMT2-215ENST00000554656 GOLGA8HP0CJ92 632 aa12.4□□□□□ -0.42
SHMT2-215ENST00000554656 PCP11498 1178 aaKnown RBP12.4□□□□□ -0.42
SHMT2-215ENST00000554656 CALML3P27482 149 aa12.4□□□□□ -0.42
SHMT2-215ENST00000554656 CCL23P55773 120 aa12.4□□□□□ -0.42
SHMT2-215ENST00000554656 RPS6P62753 249 aaKnown RBP12.4□□□□□ -0.42
SHMT2-215ENST00000554656 BMP2KLQ5H9B9 411 aa12.4□□□□□ -0.42
SHMT2-215ENST00000554656 PSRC1Q6PGN9 363 aaPredicted RBP12.4□□□□□ -0.42
SHMT2-215ENST00000554656 HERVK_113Q902F9 699 aa12.4□□□□□ -0.42
SHMT2-215ENST00000554656 COPS5Q92905 334 aa12.4□□□□□ -0.42
SHMT2-215ENST00000554656 TTC14Q96N46 770 aa12.4□□□□□ -0.42
SHMT2-215ENST00000554656 IL25Q9H293 177 aa12.4□□□□□ -0.42
SHMT2-215ENST00000554656 ALDH8A1Q9H2A2 487 aaPredicted RBP12.4□□□□□ -0.42
SHMT2-215ENST00000554656 ADD3Q9UEY8 706 aaKnown RBP12.4□□□□□ -0.42
SHMT2-215ENST00000554656 TRIP12Q14669 1992 aaPredicted RBP12.39□□□□□ -0.43
SHMT2-215ENST00000554656 LOC102724159A0A0B4J2E5 919 aa12.39□□□□□ -0.43
SHMT2-215ENST00000554656 B4E1Z4 1266 aa12.39□□□□□ -0.43
SHMT2-215ENST00000554656 ZEB2O60315 1214 aa12.39□□□□□ -0.43
SHMT2-215ENST00000554656 ARIH2O95376 493 aa12.39□□□□□ -0.43
SHMT2-215ENST00000554656 PURAQ00577 322 aaKnown RBP12.39□□□□□ -0.43
SHMT2-215ENST00000554656 PWP2Q15269 919 aaKnown RBP12.39□□□□□ -0.43
SHMT2-215ENST00000554656 CWC27Q6UX04 472 aaKnown RBP12.39□□□□□ -0.43
SHMT2-215ENST00000554656 RNF207Q6ZRF8 634 aa12.39□□□□□ -0.43
SHMT2-215ENST00000554656 OR6J1Q8NGC5 347 aa12.39□□□□□ -0.43
SHMT2-215ENST00000554656 TBC1D5Q92609 795 aa12.39□□□□□ -0.43
SHMT2-215ENST00000554656 SCLYQ96I15 445 aa12.39□□□□□ -0.43
SHMT2-215ENST00000554656 UBA5Q9GZZ9 404 aa12.39□□□□□ -0.43
SHMT2-215ENST00000554656 TRMT13Q9NUP7 481 aaKnown RBP12.39□□□□□ -0.43
SHMT2-215ENST00000554656 YBX2Q9Y2T7 364 aaKnown RBP12.39□□□□□ -0.43
SHMT2-215ENST00000554656 EIF5BO60841 1220 aaKnown RBP12.38□□□□□ -0.43
SHMT2-215ENST00000554656 KDM4AO75164 1064 aa12.38□□□□□ -0.43
SHMT2-215ENST00000554656 CYP2C9P11712 490 aa12.38□□□□□ -0.43
SHMT2-215ENST00000554656 USH1GQ495M9 461 aa12.38□□□□□ -0.43
SHMT2-215ENST00000554656 C8orf34Q49A92 452 aa12.38□□□□□ -0.43
SHMT2-215ENST00000554656 OTOP2Q7RTS6 562 aa12.38□□□□□ -0.43
SHMT2-215ENST00000554656 ENAHQ8N8S7 591 aaPredicted RBP12.38□□□□□ -0.43
SHMT2-215ENST00000554656 PNMA1Q8ND90 353 aa12.38□□□□□ -0.43
SHMT2-215ENST00000554656 ESR2Q92731 530 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms