RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 ATP8A2Q9NTI2 1148 aa17.33■□□□□ 0.36
VPS29-209ENST00000551655 RNF146Q9NTX7 359 aa17.33■□□□□ 0.36
VPS29-209ENST00000551655 COG6Q9Y2V7 657 aa17.33■□□□□ 0.36
VPS29-209ENST00000551655 ZDBF2Q9HCK1 2354 aa17.32■□□□□ 0.36
VPS29-209ENST00000551655 PITPNM1O00562 1244 aa17.32■□□□□ 0.36
VPS29-209ENST00000551655 TTF1Q15361 905 aaPredicted RBP17.32■□□□□ 0.36
VPS29-209ENST00000551655 CTR9Q6PD62 1173 aa17.32■□□□□ 0.36
VPS29-209ENST00000551655 EP400NLQ6ZTU2 488 aa17.32■□□□□ 0.36
VPS29-209ENST00000551655 FRAT1Q92837 279 aaPredicted RBP17.32■□□□□ 0.36
VPS29-209ENST00000551655 C17orf80Q9BSJ5 609 aa17.32■□□□□ 0.36
VPS29-209ENST00000551655 CLIP2Q9UDT6 1046 aa17.32■□□□□ 0.36
VPS29-209ENST00000551655 MUTYHQ9UIF7 546 aa17.32■□□□□ 0.36
VPS29-209ENST00000551655 Q9Y3F1 56 aa17.32■□□□□ 0.36
VPS29-209ENST00000551655 TECTAO75443 2155 aa17.32■□□□□ 0.36
VPS29-209ENST00000551655 CT47B1P0C2W7 299 aaPredicted RBP17.31■□□□□ 0.36
VPS29-209ENST00000551655 RASA1P20936 1047 aa17.31■□□□□ 0.36
VPS29-209ENST00000551655 IRS1P35568 1242 aa17.31■□□□□ 0.36
VPS29-209ENST00000551655 CHMP4BP1P59074 171 aa17.31■□□□□ 0.36
VPS29-209ENST00000551655 SNAP25P60880 206 aa17.31■□□□□ 0.36
VPS29-209ENST00000551655 LRRC47Q8N1G4 583 aaKnown RBP17.31■□□□□ 0.36
VPS29-209ENST00000551655 TMEM57Q8N5G2 664 aa17.31■□□□□ 0.36
VPS29-209ENST00000551655 IL1RAPL2Q9NP60 686 aa17.31■□□□□ 0.36
VPS29-209ENST00000551655 FAM86C1Q9NVL1 165 aa17.31■□□□□ 0.36
VPS29-209ENST00000551655 POLR3EQ9NVU0 708 aa17.31■□□□□ 0.36
VPS29-209ENST00000551655 NYAP2Q9P242 653 aa17.31■□□□□ 0.36
VPS29-209ENST00000551655 EXOC6BQ9Y2D4 811 aa17.31■□□□□ 0.36
VPS29-209ENST00000551655 SPTBN4Q9H254 2564 aa17.3■□□□□ 0.36
VPS29-209ENST00000551655 C19orf67A6NJJ6 358 aa17.3■□□□□ 0.36
VPS29-209ENST00000551655 OAZ1P54368 228 aa17.3■□□□□ 0.36
VPS29-209ENST00000551655 DUSP28Q4G0W2 176 aa17.3■□□□□ 0.36
VPS29-209ENST00000551655 MUM1L1Q5H9M0 696 aa17.3■□□□□ 0.36
VPS29-209ENST00000551655 AMOTL1Q8IY63 956 aa17.3■□□□□ 0.36
VPS29-209ENST00000551655 MFSD14AQ96MC6 490 aa17.3■□□□□ 0.36
VPS29-209ENST00000551655 MTG1Q9BT17 334 aaPredicted RBP17.3■□□□□ 0.36
VPS29-209ENST00000551655 FEM1BQ9UK73 627 aa17.3■□□□□ 0.36
VPS29-209ENST00000551655 ZFHX2Q9C0A1 2572 aaPredicted RBP17.3■□□□□ 0.36
VPS29-209ENST00000551655 ZBED9Q6R2W3 1325 aa17.29■□□□□ 0.36
VPS29-209ENST00000551655 GJB5O95377 273 aa17.29■□□□□ 0.36
VPS29-209ENST00000551655 ALAS1P13196 640 aa17.29■□□□□ 0.36
VPS29-209ENST00000551655 FBXO22Q8NEZ5 403 aa17.29■□□□□ 0.36
VPS29-209ENST00000551655 RAD9AQ99638 391 aa17.29■□□□□ 0.36
VPS29-209ENST00000551655 BCL11AQ9H165 835 aa17.29■□□□□ 0.36
VPS29-209ENST00000551655 ISY1Q9ULR0 285 aaKnown RBP17.29■□□□□ 0.36
VPS29-209ENST00000551655 SLC4A4Q9Y6R1 1079 aa17.29■□□□□ 0.36
VPS29-209ENST00000551655 ADD2P35612 726 aa17.28■□□□□ 0.36
VPS29-209ENST00000551655 TCF15Q12870 199 aa17.28■□□□□ 0.36
VPS29-209ENST00000551655 BFSP2Q13515 415 aa17.28■□□□□ 0.36
VPS29-209ENST00000551655 PUS10Q3MIT2 529 aaKnown RBP17.28■□□□□ 0.36
VPS29-209ENST00000551655 ADHFE1Q8IWW8 467 aa17.28■□□□□ 0.36
VPS29-209ENST00000551655 OR6J1Q8NGC5 347 aa17.28■□□□□ 0.36
VPS29-209ENST00000551655 TRERF1Q96PN7 1200 aa17.28■□□□□ 0.36
VPS29-209ENST00000551655 CTAGE1Q96RT6 745 aa17.28■□□□□ 0.36
VPS29-209ENST00000551655 WDR11Q9BZH6 1224 aa17.28■□□□□ 0.36
VPS29-209ENST00000551655 VTA1Q9NP79 307 aa17.28■□□□□ 0.36
VPS29-209ENST00000551655 GPHNQ9NQX3 736 aaPredicted RBP17.28■□□□□ 0.36
VPS29-209ENST00000551655 CYP39A1Q9NYL5 469 aa17.28■□□□□ 0.36
VPS29-209ENST00000551655 NOD1Q9Y239 953 aa17.28■□□□□ 0.36
VPS29-209ENST00000551655 ATG2AQ2TAZ0 1938 aa17.27■□□□□ 0.36
VPS29-209ENST00000551655 KMT2EQ8IZD2 1858 aa17.27■□□□□ 0.36
VPS29-209ENST00000551655 IGKV6D-41A0A0C4DH26 115 aa17.27■□□□□ 0.36
VPS29-209ENST00000551655 GFRA3O60609 400 aa17.27■□□□□ 0.36
VPS29-209ENST00000551655 NBNO60934 754 aa17.27■□□□□ 0.36
VPS29-209ENST00000551655 CLUL1Q15846 466 aa17.27■□□□□ 0.36
VPS29-209ENST00000551655 TCEAL5Q5H9L2 206 aa17.27■□□□□ 0.36
VPS29-209ENST00000551655 DHX38Q92620 1227 aaKnown RBP17.27■□□□□ 0.36
VPS29-209ENST00000551655 COPS5Q92905 334 aa17.27■□□□□ 0.36
VPS29-209ENST00000551655 MRPL38Q96DV4 380 aaKnown RBP17.27■□□□□ 0.36
VPS29-209ENST00000551655 CRBNQ96SW2 442 aa17.27■□□□□ 0.36
VPS29-209ENST00000551655 MYH7P12883 1935 aa17.26■□□□□ 0.35
VPS29-209ENST00000551655 MYO15AQ9UKN7 3530 aa17.26■□□□□ 0.35
VPS29-209ENST00000551655 TMEM232C9JQI7 657 aa17.26■□□□□ 0.35
VPS29-209ENST00000551655 CPT1AP50416 773 aa17.26■□□□□ 0.35
VPS29-209ENST00000551655 PTPN5P54829 565 aa17.26■□□□□ 0.35
VPS29-209ENST00000551655 NFRKBQ6P4R8 1299 aa17.26■□□□□ 0.35
VPS29-209ENST00000551655 CNKSR3Q6P9H4 555 aa17.26■□□□□ 0.35
VPS29-209ENST00000551655 NSMFQ6X4W1 530 aa17.26■□□□□ 0.35
VPS29-209ENST00000551655 PRDM1O75626 825 aa17.25■□□□□ 0.35
VPS29-209ENST00000551655 BMP3P12645 472 aa17.25■□□□□ 0.35
VPS29-209ENST00000551655 PTGISQ16647 500 aa17.25■□□□□ 0.35
VPS29-209ENST00000551655 SLFN13Q68D06 897 aa17.25■□□□□ 0.35
VPS29-209ENST00000551655 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.25■□□□□ 0.35
VPS29-209ENST00000551655 LRRC8DQ7L1W4 858 aa17.25■□□□□ 0.35
VPS29-209ENST00000551655 RASGRP2Q7LDG7 609 aa17.25■□□□□ 0.35
VPS29-209ENST00000551655 RNF135Q8IUD6 432 aa17.25■□□□□ 0.35
VPS29-209ENST00000551655 BANK1Q8NDB2 785 aa17.25■□□□□ 0.35
VPS29-209ENST00000551655 MORC4Q8TE76 937 aa17.25■□□□□ 0.35
VPS29-209ENST00000551655 PABPC5Q96DU9 382 aaKnown RBP17.25■□□□□ 0.35
VPS29-209ENST00000551655 CEP95Q96GE4 821 aa17.25■□□□□ 0.35
VPS29-209ENST00000551655 MKNK2Q9HBH9 465 aa17.25■□□□□ 0.35
VPS29-209ENST00000551655 CLDND1Q9NY35 253 aa17.25■□□□□ 0.35
VPS29-209ENST00000551655 PRKAG3Q9UGI9 489 aa17.25■□□□□ 0.35
VPS29-209ENST00000551655 LRRFIP1Q32MZ4 808 aaKnown RBP17.24■□□□□ 0.35
VPS29-209ENST00000551655 HERC4Q5GLZ8 1057 aaPredicted RBP17.24■□□□□ 0.35
VPS29-209ENST00000551655 GDF6Q6KF10 455 aaPredicted RBP17.24■□□□□ 0.35
VPS29-209ENST00000551655 AFAP1L1Q8TED9 768 aa17.24■□□□□ 0.35
VPS29-209ENST00000551655 DDRGK1Q96HY6 314 aa17.24■□□□□ 0.35
VPS29-209ENST00000551655 PUS7LQ9H0K6 701 aaKnown RBP17.24■□□□□ 0.35
VPS29-209ENST00000551655 MYO7AQ13402 2215 aa17.24■□□□□ 0.35
VPS29-209ENST00000551655 MINDY4BA8MYZ0 360 aa17.23■□□□□ 0.35
VPS29-209ENST00000551655 IPO8O15397 1037 aaKnown RBP17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 86.4 ms