RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 DZIP1Q86YF9 867 aaKnown RBP8.05□□□□□ -1.12
LIMA1-204ENST00000549064 ARRDC4Q8NCT1 418 aa8.05□□□□□ -1.12
LIMA1-204ENST00000549064 SREK1Q8WXA9 508 aaKnown RBP8.05□□□□□ -1.12
LIMA1-204ENST00000549064 SNX27Q96L92 541 aa8.05□□□□□ -1.12
LIMA1-204ENST00000549064 PBX4Q9BYU1 374 aa8.05□□□□□ -1.12
LIMA1-204ENST00000549064 MROH7-TTC4A0A0A0MT08 1334 aa8.04□□□□□ -1.12
LIMA1-204ENST00000549064 PIEZO1Q92508 2521 aa8.04□□□□□ -1.12
LIMA1-204ENST00000549064 LRRC37A2A6NM11 1700 aa8.04□□□□□ -1.12
LIMA1-204ENST00000549064 FAM86C2PA6NEL3 165 aa8.04□□□□□ -1.12
LIMA1-204ENST00000549064 SLC15A5A6NIM6 579 aa8.04□□□□□ -1.12
LIMA1-204ENST00000549064 EYA2O00167 538 aa8.04□□□□□ -1.12
LIMA1-204ENST00000549064 IGHA2P01877 340 aa8.04□□□□□ -1.12
LIMA1-204ENST00000549064 NR3C2P08235 984 aa8.04□□□□□ -1.12
LIMA1-204ENST00000549064 CLTBP09497 229 aa8.04□□□□□ -1.12
LIMA1-204ENST00000549064 ERCC5P28715 1186 aaPredicted RBP8.04□□□□□ -1.12
LIMA1-204ENST00000549064 GGCXP38435 758 aa8.04□□□□□ -1.12
LIMA1-204ENST00000549064 RPIAP49247 311 aa8.04□□□□□ -1.12
LIMA1-204ENST00000549064 FPGSQ05932 587 aa8.04□□□□□ -1.12
LIMA1-204ENST00000549064 EXOSC9Q06265 439 aaKnown RBP8.04□□□□□ -1.12
LIMA1-204ENST00000549064 LRRC41Q15345 812 aa8.04□□□□□ -1.12
LIMA1-204ENST00000549064 TLR1Q15399 786 aa8.04□□□□□ -1.12
LIMA1-204ENST00000549064 NAALADL2Q58DX5 795 aa8.04□□□□□ -1.12
LIMA1-204ENST00000549064 CCDC129Q6ZRS4 1044 aa8.04□□□□□ -1.12
LIMA1-204ENST00000549064 MICALL1Q8N3F8 863 aa8.04□□□□□ -1.12
LIMA1-204ENST00000549064 STAG2Q8N3U4 1231 aa8.04□□□□□ -1.12
LIMA1-204ENST00000549064 ZNF384Q8TF68 577 aa8.04□□□□□ -1.12
LIMA1-204ENST00000549064 CITED4Q96RK1 184 aa8.04□□□□□ -1.12
LIMA1-204ENST00000549064 DUSP9Q99956 384 aaKnown RBP8.04□□□□□ -1.12
LIMA1-204ENST00000549064 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.04□□□□□ -1.12
LIMA1-204ENST00000549064 WDR18Q9BV38 432 aa8.04□□□□□ -1.12
LIMA1-204ENST00000549064 C11orf16Q9NQ32 467 aa8.04□□□□□ -1.12
LIMA1-204ENST00000549064 ABCF2Q9UG63 623 aa8.04□□□□□ -1.12
LIMA1-204ENST00000549064 PARP2Q9UGN5 583 aa8.04□□□□□ -1.12
LIMA1-204ENST00000549064 DENND2AQ9ULE3 1009 aa8.04□□□□□ -1.12
LIMA1-204ENST00000549064 TACC3Q9Y6A5 838 aa8.04□□□□□ -1.12
LIMA1-204ENST00000549064 WDFY4Q6ZS81 3184 aa8.04□□□□□ -1.12
LIMA1-204ENST00000549064 ZNF236Q9UL36 1845 aa8.03□□□□□ -1.12
LIMA1-204ENST00000549064 GPR75-ASB3A0A0A6YYF3 556 aa8.03□□□□□ -1.12
LIMA1-204ENST00000549064 KIAA0355O15063 1070 aa8.03□□□□□ -1.12
LIMA1-204ENST00000549064 SIAH2O43255 324 aa8.03□□□□□ -1.12
LIMA1-204ENST00000549064 PQBP1O60828 265 aaKnown RBP8.03□□□□□ -1.12
LIMA1-204ENST00000549064 PRPF40AO75400 957 aaKnown RBP8.03□□□□□ -1.12
LIMA1-204ENST00000549064 GDF11O95390 407 aa8.03□□□□□ -1.12
LIMA1-204ENST00000549064 HOXC6P09630 235 aa8.03□□□□□ -1.12
LIMA1-204ENST00000549064 ADORA1P30542 326 aa8.03□□□□□ -1.12
LIMA1-204ENST00000549064 RFX5P48382 616 aaPredicted RBP8.03□□□□□ -1.12
LIMA1-204ENST00000549064 GRB14Q14449 540 aa8.03□□□□□ -1.12
LIMA1-204ENST00000549064 ATP2B3Q16720 1220 aa8.03□□□□□ -1.12
LIMA1-204ENST00000549064 FAM47AQ5JRC9 791 aa8.03□□□□□ -1.12
LIMA1-204ENST00000549064 TMEM31Q5JXX7 168 aa8.03□□□□□ -1.12
LIMA1-204ENST00000549064 PRAMEF19Q5SWL8 479 aa8.03□□□□□ -1.12
LIMA1-204ENST00000549064 ATG9AQ7Z3C6 839 aa8.03□□□□□ -1.12
LIMA1-204ENST00000549064 XAGE2Q96GT9 111 aa8.03□□□□□ -1.12
LIMA1-204ENST00000549064 DMRTB1Q96MA1 342 aa8.03□□□□□ -1.12
LIMA1-204ENST00000549064 DRC1Q96MC2 740 aa8.03□□□□□ -1.12
LIMA1-204ENST00000549064 FAM129BQ96TA1 746 aa8.03□□□□□ -1.12
LIMA1-204ENST00000549064 DNAJC18Q9H819 358 aa8.03□□□□□ -1.12
LIMA1-204ENST00000549064 GNL3LQ9NVN8 582 aaKnown RBP8.03□□□□□ -1.12
LIMA1-204ENST00000549064 ZNFX1Q9P2E3 1918 aaKnown RBP8.02□□□□□ -1.13
LIMA1-204ENST00000549064 FOCADQ5VW36 1801 aa8.02□□□□□ -1.13
LIMA1-204ENST00000549064 C19orf81C9J6K1 198 aa8.02□□□□□ -1.13
LIMA1-204ENST00000549064 SCAMP3O14828 347 aaKnown RBP8.02□□□□□ -1.13
LIMA1-204ENST00000549064 SEPT4O43236 478 aa8.02□□□□□ -1.13
LIMA1-204ENST00000549064 GLRX3O76003 335 aaKnown RBP8.02□□□□□ -1.13
LIMA1-204ENST00000549064 CD2BP2O95400 341 aaKnown RBP8.02□□□□□ -1.13
LIMA1-204ENST00000549064 CCNA1P78396 465 aa8.02□□□□□ -1.13
LIMA1-204ENST00000549064 MECOMQ03112 1051 aa8.02□□□□□ -1.13
LIMA1-204ENST00000549064 RASGRF1Q13972 1273 aa8.02□□□□□ -1.13
LIMA1-204ENST00000549064 ZYXQ15942 572 aaKnown RBP8.02□□□□□ -1.13
LIMA1-204ENST00000549064 C1orf53Q5VUE5 145 aa8.02□□□□□ -1.13
LIMA1-204ENST00000549064 C16orf59Q7L2K0 433 aa8.02□□□□□ -1.13
LIMA1-204ENST00000549064 MYO19Q96H55 970 aa8.02□□□□□ -1.13
LIMA1-204ENST00000549064 SIL1Q9H173 461 aa8.02□□□□□ -1.13
LIMA1-204ENST00000549064 NKX2-4Q9H2Z4 354 aa8.02□□□□□ -1.13
LIMA1-204ENST00000549064 TMEM39AQ9NV64 488 aa8.02□□□□□ -1.13
LIMA1-204ENST00000549064 BTBD7Q9P203 1132 aa8.02□□□□□ -1.13
LIMA1-204ENST00000549064 POLIQ9UNA4 740 aa8.02□□□□□ -1.13
LIMA1-204ENST00000549064 RABGAP1Q9Y3P9 1069 aa8.02□□□□□ -1.13
LIMA1-204ENST00000549064 PRRC2BQ5JSZ5 2229 aaKnown RBP8.01□□□□□ -1.13
LIMA1-204ENST00000549064 ASNSP08243 561 aa8.01□□□□□ -1.13
LIMA1-204ENST00000549064 ACRP10323 421 aa8.01□□□□□ -1.13
LIMA1-204ENST00000549064 NR5A1Q13285 461 aa8.01□□□□□ -1.13
LIMA1-204ENST00000549064 TMEM240Q5SV17 173 aa8.01□□□□□ -1.13
LIMA1-204ENST00000549064 PPP1R18Q6NYC8 613 aa8.01□□□□□ -1.13
LIMA1-204ENST00000549064 DPP9Q86TI2 863 aa8.01□□□□□ -1.13
LIMA1-204ENST00000549064 ZGPATQ8N5A5 531 aaKnown RBP8.01□□□□□ -1.13
LIMA1-204ENST00000549064 TMEM87AQ8NBN3 555 aa8.01□□□□□ -1.13
LIMA1-204ENST00000549064 NIF3L1Q9GZT8 377 aa8.01□□□□□ -1.13
LIMA1-204ENST00000549064 MRS2Q9HD23 443 aa8.01□□□□□ -1.13
LIMA1-204ENST00000549064 CHD7Q9P2D1 2997 aa8.01□□□□□ -1.13
LIMA1-204ENST00000549064 HERC5Q9UII4 1024 aaKnown RBP8.01□□□□□ -1.13
LIMA1-204ENST00000549064 ZNF232Q9UNY5 417 aa8.01□□□□□ -1.13
LIMA1-204ENST00000549064 PHF24Q9UPV7 400 aa8.01□□□□□ -1.13
LIMA1-204ENST00000549064 YBX2Q9Y2T7 364 aaKnown RBP8.01□□□□□ -1.13
LIMA1-204ENST00000549064 CHD9Q3L8U1 2897 aa8.01□□□□□ -1.13
LIMA1-204ENST00000549064 IL16Q14005 1332 aa8.01□□□□□ -1.13
LIMA1-204ENST00000549064 A0A1W2PQ45 241 aaPredicted RBP8□□□□□ -1.13
LIMA1-204ENST00000549064 A0A1W2PQY0 241 aa8□□□□□ -1.13
LIMA1-204ENST00000549064 SERTM1A2A2V5 107 aa8□□□□□ -1.13
LIMA1-204ENST00000549064 EML1O00423 815 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms