RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 CABP7Q86V35 215 aa15.31■□□□□ 0.04
VPS33A-208ENST00000543633 CAGE1Q8TC20 777 aa15.31■□□□□ 0.04
VPS33A-208ENST00000543633 BBXQ8WY36 941 aaPredicted RBP15.31■□□□□ 0.04
VPS33A-208ENST00000543633 ANKRD2Q9GZV1 360 aa15.31■□□□□ 0.04
VPS33A-208ENST00000543633 HDAC6Q9UBN7 1215 aa15.31■□□□□ 0.04
VPS33A-208ENST00000543633 FAM184BQ9ULE4 1060 aa15.31■□□□□ 0.04
VPS33A-208ENST00000543633 SNX12Q9UMY4 172 aa15.31■□□□□ 0.04
VPS33A-208ENST00000543633 LY75O60449 1722 aa15.3■□□□□ 0.04
VPS33A-208ENST00000543633 OR52Z1P0C646 297 aa15.3■□□□□ 0.04
VPS33A-208ENST00000543633 IDEP14735 1019 aa15.3■□□□□ 0.04
VPS33A-208ENST00000543633 VEGFAP15692 232 aaPredicted RBP15.3■□□□□ 0.04
VPS33A-208ENST00000543633 MTIF2P46199 727 aaKnown RBP15.3■□□□□ 0.04
VPS33A-208ENST00000543633 MIIPQ5JXC2 388 aa15.3■□□□□ 0.04
VPS33A-208ENST00000543633 C12orf60Q5U649 245 aa15.3■□□□□ 0.04
VPS33A-208ENST00000543633 SPZ1Q9BXG8 430 aa15.3■□□□□ 0.04
VPS33A-208ENST00000543633 LACRTQ9GZZ8 138 aa15.3■□□□□ 0.04
VPS33A-208ENST00000543633 FAM107BQ9H098 131 aa15.3■□□□□ 0.04
VPS33A-208ENST00000543633 AGPAT5Q9NUQ2 364 aa15.3■□□□□ 0.04
VPS33A-208ENST00000543633 MAD2L2Q9UI95 211 aa15.3■□□□□ 0.04
VPS33A-208ENST00000543633 PLAGL2Q9UPG8 496 aa15.3■□□□□ 0.04
VPS33A-208ENST00000543633 FGFR1OPO95684 399 aaKnown RBP15.29■□□□□ 0.04
VPS33A-208ENST00000543633 TCP1P17987 556 aaKnown RBP15.29■□□□□ 0.04
VPS33A-208ENST00000543633 PLCG1P19174 1290 aa15.29■□□□□ 0.04
VPS33A-208ENST00000543633 TNFRSF8P28908 595 aa15.29■□□□□ 0.04
VPS33A-208ENST00000543633 ZNF772Q68DY9 489 aaPredicted RBP15.29■□□□□ 0.04
VPS33A-208ENST00000543633 AENQ8WTP8 325 aaKnown RBP15.29■□□□□ 0.04
VPS33A-208ENST00000543633 GPKOWQ92917 476 aaPredicted RBP eCLIP15.29■□□□□ 0.04
VPS33A-208ENST00000543633 NOC4LQ9BVI4 516 aaKnown RBP15.29■□□□□ 0.04
VPS33A-208ENST00000543633 SELENOOQ9BVL4 669 aa15.29■□□□□ 0.04
VPS33A-208ENST00000543633 EDEM3Q9BZQ6 932 aa15.29■□□□□ 0.04
VPS33A-208ENST00000543633 SH2D4AQ9H788 454 aa15.29■□□□□ 0.04
VPS33A-208ENST00000543633 EFCC1Q9HA90 598 aa15.29■□□□□ 0.04
VPS33A-208ENST00000543633 BAZ2BQ9UIF8 2168 aaKnown RBP15.29■□□□□ 0.04
VPS33A-208ENST00000543633 RCCD1A6NED2 376 aa15.29■□□□□ 0.04
VPS33A-208ENST00000543633 HIBADHP31937 336 aaKnown RBP15.29■□□□□ 0.04
VPS33A-208ENST00000543633 MAGEA9P43362 315 aa15.29■□□□□ 0.04
VPS33A-208ENST00000543633 PDE4DQ08499 809 aa15.29■□□□□ 0.04
VPS33A-208ENST00000543633 INF2Q27J81 1249 aa15.29■□□□□ 0.04
VPS33A-208ENST00000543633 TYW1BQ6NUM6 668 aa15.29■□□□□ 0.04
VPS33A-208ENST00000543633 GBP6Q6ZN66 633 aa15.29■□□□□ 0.04
VPS33A-208ENST00000543633 LINC00116Q8NCU8 138 aa15.29■□□□□ 0.04
VPS33A-208ENST00000543633 CCDC42Q96M95 316 aa15.29■□□□□ 0.04
VPS33A-208ENST00000543633 TRERF1Q96PN7 1200 aa15.29■□□□□ 0.04
VPS33A-208ENST00000543633 ZMYND12Q9H0C1 365 aa15.29■□□□□ 0.04
VPS33A-208ENST00000543633 STK17AQ9UEE5 414 aa15.29■□□□□ 0.04
VPS33A-208ENST00000543633 DDX60LQ5H9U9 1706 aaKnown RBP15.28■□□□□ 0.04
VPS33A-208ENST00000543633 PALM3A6NDB9 673 aaPredicted RBP15.28■□□□□ 0.04
VPS33A-208ENST00000543633 PP2D1A8MPX8 630 aa15.28■□□□□ 0.04
VPS33A-208ENST00000543633 CYP2D6P10635 497 aa15.28■□□□□ 0.04
VPS33A-208ENST00000543633 SMARCA1P28370 1054 aa15.28■□□□□ 0.04
VPS33A-208ENST00000543633 KCNQ4P56696 695 aa15.28■□□□□ 0.04
VPS33A-208ENST00000543633 TFAP4Q01664 338 aa15.28■□□□□ 0.04
VPS33A-208ENST00000543633 ERFEQ4G0M1 354 aa15.28■□□□□ 0.04
VPS33A-208ENST00000543633 ANKRD40Q6AI12 368 aa15.28■□□□□ 0.04
VPS33A-208ENST00000543633 CENPPQ6IPU0 288 aa15.28■□□□□ 0.04
VPS33A-208ENST00000543633 CCDC84Q86UT8 332 aaPredicted RBP15.28■□□□□ 0.04
VPS33A-208ENST00000543633 ALS2CR12Q96Q35 445 aa15.28■□□□□ 0.04
VPS33A-208ENST00000543633 LCMT1Q9UIC8 334 aa15.28■□□□□ 0.04
VPS33A-208ENST00000543633 A0A0U1RQG5 324 aaPredicted RBP15.27■□□□□ 0.04
VPS33A-208ENST00000543633 PVALEFA0A1B0GWK0 134 aa15.27■□□□□ 0.04
VPS33A-208ENST00000543633 A6NNZ2 444 aa15.27■□□□□ 0.04
VPS33A-208ENST00000543633 ASIC1P78348 528 aa15.27■□□□□ 0.04
VPS33A-208ENST00000543633 NONOQ15233 471 aaKnown RBP eCLIP15.27■□□□□ 0.04
VPS33A-208ENST00000543633 TUBB8Q3ZCM7 444 aa15.27■□□□□ 0.04
VPS33A-208ENST00000543633 CERS3Q8IU89 383 aa15.27■□□□□ 0.04
VPS33A-208ENST00000543633 RASGRP4Q8TDF6 673 aa15.27■□□□□ 0.04
VPS33A-208ENST00000543633 CAPZA3Q96KX2 299 aa15.27■□□□□ 0.04
VPS33A-208ENST00000543633 IL17RBQ9NRM6 502 aa15.27■□□□□ 0.04
VPS33A-208ENST00000543633 MCM9Q9NXL9 1143 aa15.27■□□□□ 0.04
VPS33A-208ENST00000543633 TSKSQ9UJT2 592 aa15.27■□□□□ 0.04
VPS33A-208ENST00000543633 SIK3Q9Y2K2 1263 aa15.27■□□□□ 0.04
VPS33A-208ENST00000543633 HYOU1Q9Y4L1 999 aa15.27■□□□□ 0.04
VPS33A-208ENST00000543633 PJA2O43164 708 aa15.27■□□□□ 0.03
VPS33A-208ENST00000543633 SRGAP2O75044 1071 aa15.27■□□□□ 0.03
VPS33A-208ENST00000543633 CORO7P57737 925 aa15.27■□□□□ 0.03
VPS33A-208ENST00000543633 NNTQ13423 1086 aa15.27■□□□□ 0.03
VPS33A-208ENST00000543633 KRT27Q7Z3Y8 459 aa15.27■□□□□ 0.03
VPS33A-208ENST00000543633 HEATR3Q7Z4Q2 680 aa15.27■□□□□ 0.03
VPS33A-208ENST00000543633 C10orf67Q8IYJ2 551 aa15.27■□□□□ 0.03
VPS33A-208ENST00000543633 STAG2Q8N3U4 1231 aa15.27■□□□□ 0.03
VPS33A-208ENST00000543633 FAM76AQ8TAV0 307 aa15.27■□□□□ 0.03
VPS33A-208ENST00000543633 TRIM34Q9BYJ4 488 aa15.27■□□□□ 0.03
VPS33A-208ENST00000543633 IFIH1Q9BYX4 1025 aaKnown RBP15.27■□□□□ 0.03
VPS33A-208ENST00000543633 JADE2Q9NQC1 790 aa15.27■□□□□ 0.03
VPS33A-208ENST00000543633 ESYT2A0FGR8 921 aa15.26■□□□□ 0.03
VPS33A-208ENST00000543633 GOLGA6BA6NDN3 693 aa15.26■□□□□ 0.03
VPS33A-208ENST00000543633 GOLGA8KD6RF30 607 aa15.26■□□□□ 0.03
VPS33A-208ENST00000543633 hCG_1984214I3L0E3 225 aa15.26■□□□□ 0.03
VPS33A-208ENST00000543633 PDE2AO00408 941 aaPredicted RBP15.26■□□□□ 0.03
VPS33A-208ENST00000543633 PHACTR2O75167 634 aa15.26■□□□□ 0.03
VPS33A-208ENST00000543633 GNA11P29992 359 aa15.26■□□□□ 0.03
VPS33A-208ENST00000543633 EVX2Q03828 476 aa15.26■□□□□ 0.03
VPS33A-208ENST00000543633 MAN2A1Q16706 1144 aa15.26■□□□□ 0.03
VPS33A-208ENST00000543633 EMBQ6PCB8 327 aa15.26■□□□□ 0.03
VPS33A-208ENST00000543633 CREG2Q8IUH2 290 aa15.26■□□□□ 0.03
VPS33A-208ENST00000543633 ZNF713Q8N859 430 aaPredicted RBP15.26■□□□□ 0.03
VPS33A-208ENST00000543633 LRRC15Q8TF66 581 aa15.26■□□□□ 0.03
VPS33A-208ENST00000543633 CALML4Q96GE6 196 aa15.26■□□□□ 0.03
VPS33A-208ENST00000543633 PCMTD1Q96MG8 357 aaPredicted RBP15.26■□□□□ 0.03
VPS33A-208ENST00000543633 RNF14Q9UBS8 474 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms