RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 LGALS16A8MUM7 142 aa11.07□□□□□ -0.64
SS18-205ENST00000542420 H0YIN7 160 aa11.07□□□□□ -0.64
SS18-205ENST00000542420 RIMBP2O15034 1052 aa11.07□□□□□ -0.64
SS18-205ENST00000542420 FGFR1OPO95684 399 aaKnown RBP11.07□□□□□ -0.64
SS18-205ENST00000542420 MMP10P09238 476 aa11.07□□□□□ -0.64
SS18-205ENST00000542420 PLCG1P19174 1290 aa11.07□□□□□ -0.64
SS18-205ENST00000542420 FIGNQ5HY92 759 aa11.07□□□□□ -0.64
SS18-205ENST00000542420 DACT2Q5SW24 774 aa11.07□□□□□ -0.64
SS18-205ENST00000542420 KLHL10Q6JEL2 608 aa11.07□□□□□ -0.64
SS18-205ENST00000542420 ZNF662Q6ZS27 426 aa11.07□□□□□ -0.64
SS18-205ENST00000542420 ARHGAP27Q6ZUM4 889 aa11.07□□□□□ -0.64
SS18-205ENST00000542420 RASGRP2Q7LDG7 609 aa11.07□□□□□ -0.64
SS18-205ENST00000542420 GMCL1P1Q8NEA9 526 aa11.07□□□□□ -0.64
SS18-205ENST00000542420 ZNF397Q8NF99 534 aaPredicted RBP11.07□□□□□ -0.64
SS18-205ENST00000542420 MBOAT7Q96N66 472 aa11.07□□□□□ -0.64
SS18-205ENST00000542420 VPS33BQ9H267 617 aa11.07□□□□□ -0.64
SS18-205ENST00000542420 BLZF1Q9H2G9 400 aa11.07□□□□□ -0.64
SS18-205ENST00000542420 EXOC1Q9NV70 894 aa11.07□□□□□ -0.64
SS18-205ENST00000542420 CYP3A7-CYP3A51PA0A087WV96 503 aa11.06□□□□□ -0.64
SS18-205ENST00000542420 N4BP3O15049 544 aa11.06□□□□□ -0.64
SS18-205ENST00000542420 CYP3A7P24462 503 aa11.06□□□□□ -0.64
SS18-205ENST00000542420 DNM2P50570 870 aa11.06□□□□□ -0.64
SS18-205ENST00000542420 USP11P51784 963 aa11.06□□□□□ -0.64
SS18-205ENST00000542420 SLC20A2Q08357 652 aa11.06□□□□□ -0.64
SS18-205ENST00000542420 PICALMQ13492 652 aa11.06□□□□□ -0.64
SS18-205ENST00000542420 TMEM119Q4V9L6 283 aa11.06□□□□□ -0.64
SS18-205ENST00000542420 TTI2Q6NXR4 508 aa11.06□□□□□ -0.64
SS18-205ENST00000542420 TMEM179Q6ZVK1 233 aa11.06□□□□□ -0.64
SS18-205ENST00000542420 UNC13DQ70J99 1090 aa11.06□□□□□ -0.64
SS18-205ENST00000542420 ADGRF4Q8IZF3 695 aa11.06□□□□□ -0.64
SS18-205ENST00000542420 ZNF592Q92610 1267 aa11.06□□□□□ -0.64
SS18-205ENST00000542420 GMCL1Q96IK5 515 aa11.06□□□□□ -0.64
SS18-205ENST00000542420 MAGEC2Q9UBF1 373 aaPredicted RBP11.06□□□□□ -0.64
SS18-205ENST00000542420 ATF5Q9Y2D1 282 aaPredicted RBP11.06□□□□□ -0.64
SS18-205ENST00000542420 IRX5P78411 483 aaPredicted RBP11.06□□□□□ -0.64
SS18-205ENST00000542420 SYT10Q6XYQ8 523 aa11.06□□□□□ -0.64
SS18-205ENST00000542420 SV2BQ7L1I2 683 aa11.06□□□□□ -0.64
SS18-205ENST00000542420 C2CD5Q86YS7 1000 aa11.06□□□□□ -0.64
SS18-205ENST00000542420 P2RX5Q93086 422 aa11.06□□□□□ -0.64
SS18-205ENST00000542420 MMTAG2Q9BU76 263 aaKnown RBP11.06□□□□□ -0.64
SS18-205ENST00000542420 NT5C3AQ9H0P0 336 aa11.06□□□□□ -0.64
SS18-205ENST00000542420 TBX3O15119 743 aa11.05□□□□□ -0.64
SS18-205ENST00000542420 TEX33O43247 280 aa11.05□□□□□ -0.64
SS18-205ENST00000542420 APBA3O96018 575 aa11.05□□□□□ -0.64
SS18-205ENST00000542420 MMP14P50281 582 aa11.05□□□□□ -0.64
SS18-205ENST00000542420 STX17P56962 302 aa11.05□□□□□ -0.64
SS18-205ENST00000542420 RBL2Q08999 1139 aa11.05□□□□□ -0.64
SS18-205ENST00000542420 CYP26C1Q6V0L0 522 aa11.05□□□□□ -0.64
SS18-205ENST00000542420 ZNF507Q8TCN5 953 aa11.05□□□□□ -0.64
SS18-205ENST00000542420 LRWD1Q9UFC0 647 aa11.05□□□□□ -0.64
SS18-205ENST00000542420 A0A1W2PQJ5 194 aa11.04□□□□□ -0.64
SS18-205ENST00000542420 GYPCP04921 128 aa11.04□□□□□ -0.64
SS18-205ENST00000542420 CASP1P29466 404 aa11.04□□□□□ -0.64
SS18-205ENST00000542420 KRT79Q5XKE5 535 aa11.04□□□□□ -0.64
SS18-205ENST00000542420 BTNL9Q6UXG8 535 aa11.04□□□□□ -0.64
SS18-205ENST00000542420 ZSCAN29Q8IWY8 852 aaPredicted RBP11.04□□□□□ -0.64
SS18-205ENST00000542420 LRRC47Q8N1G4 583 aaKnown RBP11.04□□□□□ -0.64
SS18-205ENST00000542420 GUF1Q8N442 669 aaKnown RBP11.04□□□□□ -0.64
SS18-205ENST00000542420 BIN2Q9UBW5 565 aaPredicted RBP11.04□□□□□ -0.64
SS18-205ENST00000542420 ZNF215Q9UL58 517 aaPredicted RBP11.04□□□□□ -0.64
SS18-205ENST00000542420 GDAQ9Y2T3 454 aa11.04□□□□□ -0.64
SS18-205ENST00000542420 ADGRG1Q9Y653 693 aa11.04□□□□□ -0.64
SS18-205ENST00000542420 EFCAB8A8MWE9 144 aa11.04□□□□□ -0.64
SS18-205ENST00000542420 ECE2O60344 883 aa11.04□□□□□ -0.64
SS18-205ENST00000542420 FOSP01100 380 aaPredicted RBP11.04□□□□□ -0.64
SS18-205ENST00000542420 CASQ1P31415 396 aa11.04□□□□□ -0.64
SS18-205ENST00000542420 CDK17Q00537 523 aa11.04□□□□□ -0.64
SS18-205ENST00000542420 LRRC63Q05C16 580 aa11.04□□□□□ -0.64
SS18-205ENST00000542420 PDE4DQ08499 809 aa11.04□□□□□ -0.64
SS18-205ENST00000542420 GRB10Q13322 594 aa11.04□□□□□ -0.64
SS18-205ENST00000542420 IRF2BP1Q8IU81 584 aa11.04□□□□□ -0.64
SS18-205ENST00000542420 SMYD4Q8IYR2 804 aaPredicted RBP11.04□□□□□ -0.64
SS18-205ENST00000542420 MB21D1Q8N884 522 aa11.04□□□□□ -0.64
SS18-205ENST00000542420 C7orf43Q8WVR3 580 aa11.04□□□□□ -0.64
SS18-205ENST00000542420 LARP4BQ92615 738 aaKnown RBP11.04□□□□□ -0.64
SS18-205ENST00000542420 CDK5RAP3Q96JB5 506 aa11.04□□□□□ -0.64
SS18-205ENST00000542420 UBA5Q9GZZ9 404 aa11.04□□□□□ -0.64
SS18-205ENST00000542420 ABHD10Q9NUJ1 306 aa11.04□□□□□ -0.64
SS18-205ENST00000542420 FRMPD2Q68DX3 1309 aaPredicted RBP11.03□□□□□ -0.64
SS18-205ENST00000542420 ADKP55263 362 aaKnown RBP11.03□□□□□ -0.64
SS18-205ENST00000542420 MAP3K9P80192 1104 aa11.03□□□□□ -0.64
SS18-205ENST00000542420 EHHADHQ08426 723 aa11.03□□□□□ -0.64
SS18-205ENST00000542420 DOK7Q18PE1 504 aa11.03□□□□□ -0.64
SS18-205ENST00000542420 CERKLQ49MI3 558 aaPredicted RBP11.03□□□□□ -0.64
SS18-205ENST00000542420 JAKMIP3Q5VZ66 844 aa11.03□□□□□ -0.64
SS18-205ENST00000542420 CENPPQ6IPU0 288 aa11.03□□□□□ -0.64
SS18-205ENST00000542420 SLFN12Q8IYM2 578 aa11.03□□□□□ -0.64
SS18-205ENST00000542420 CNKSR2Q8WXI2 1034 aa11.03□□□□□ -0.64
SS18-205ENST00000542420 RAD54LQ92698 747 aa11.03□□□□□ -0.64
SS18-205ENST00000542420 TRIM47Q96LD4 638 aa11.03□□□□□ -0.64
SS18-205ENST00000542420 DNAJC7Q99615 494 aa11.03□□□□□ -0.64
SS18-205ENST00000542420 HERC5Q9UII4 1024 aaKnown RBP11.03□□□□□ -0.64
SS18-205ENST00000542420 CAPN11Q9UMQ6 739 aa11.03□□□□□ -0.64
SS18-205ENST00000542420 CHRM1P11229 460 aaPredicted RBP11.03□□□□□ -0.64
SS18-205ENST00000542420 TECP42680 631 aa11.03□□□□□ -0.64
SS18-205ENST00000542420 ASIC1P78348 528 aa11.03□□□□□ -0.64
SS18-205ENST00000542420 CCDC96Q2M329 555 aa11.03□□□□□ -0.64
SS18-205ENST00000542420 FKBP1CQ5VVH2 108 aa11.03□□□□□ -0.64
SS18-205ENST00000542420 STAMQ92783 540 aa11.03□□□□□ -0.64
SS18-205ENST00000542420 PNMA5Q96PV4 448 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms