RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 BARHL2Q9NY43 387 aa15.14■□□□□ 0.01
PTPN1-202ENST00000541713 FAN1Q9Y2M0 1017 aa15.14■□□□□ 0.01
PTPN1-202ENST00000541713 STAT3P40763 770 aa15.13■□□□□ 0.01
PTPN1-202ENST00000541713 CALCRLQ16602 461 aa15.13■□□□□ 0.01
PTPN1-202ENST00000541713 KCNK18Q7Z418 384 aa15.13■□□□□ 0.01
PTPN1-202ENST00000541713 KIAA0825Q8IV33 1275 aa15.13■□□□□ 0.01
PTPN1-202ENST00000541713 CALML4Q96GE6 196 aa15.13■□□□□ 0.01
PTPN1-202ENST00000541713 USP21Q9UK80 565 aa15.13■□□□□ 0.01
PTPN1-202ENST00000541713 LRP6O75581 1613 aa15.13■□□□□ 0.01
PTPN1-202ENST00000541713 UBR2Q8IWV8 1755 aa15.13■□□□□ 0.01
PTPN1-202ENST00000541713 ZRANB2O95218 330 aaKnown RBP eCLIP15.13■□□□□ 0.013e-6■■■■■ 27.8
PTPN1-202ENST00000541713 ARHGAP25P42331 645 aa15.13■□□□□ 0.01
PTPN1-202ENST00000541713 NEK8Q86SG6 692 aa15.13■□□□□ 0.01
PTPN1-202ENST00000541713 FCHSD1Q86WN1 690 aa15.13■□□□□ 0.01
PTPN1-202ENST00000541713 CCDC148Q8NFR7 591 aa15.13■□□□□ 0.01
PTPN1-202ENST00000541713 CCDC47Q96A33 483 aaKnown RBP15.13■□□□□ 0.01
PTPN1-202ENST00000541713 GGA1Q9UJY5 639 aa15.13■□□□□ 0.01
PTPN1-202ENST00000541713 MOCS3O95396 460 aa15.13■□□□□ 0.01
PTPN1-202ENST00000541713 GRM4Q14833 912 aa15.13■□□□□ 0.01
PTPN1-202ENST00000541713 EZH2Q15910 746 aaKnown RBP15.13■□□□□ 0.01
PTPN1-202ENST00000541713 CACNA2D4Q7Z3S7 1137 aa15.13■□□□□ 0.01
PTPN1-202ENST00000541713 SPICE1Q8N0Z3 855 aa15.13■□□□□ 0.01
PTPN1-202ENST00000541713 FUT8Q9BYC5 575 aa15.13■□□□□ 0.01
PTPN1-202ENST00000541713 POLLQ9UGP5 575 aa15.13■□□□□ 0.01
PTPN1-202ENST00000541713 DISP2A7MBM2 1401 aa15.12■□□□□ 0.01
PTPN1-202ENST00000541713 DGKHQ86XP1 1220 aa15.12■□□□□ 0.01
PTPN1-202ENST00000541713 RABGGTAQ92696 567 aa15.12■□□□□ 0.01
PTPN1-202ENST00000541713 TRIM9Q9C026 710 aa15.12■□□□□ 0.01
PTPN1-202ENST00000541713 NHEJ1Q9H9Q4 299 aaPredicted RBP15.12■□□□□ 0.01
PTPN1-202ENST00000541713 DBNDD1Q9H9R9 158 aa15.12■□□□□ 0.01
PTPN1-202ENST00000541713 TTF2Q9UNY4 1162 aaKnown RBP15.12■□□□□ 0.01
PTPN1-202ENST00000541713 CICQ96RK0 1608 aaPredicted RBP15.12■□□□□ 0.01
PTPN1-202ENST00000541713 H7C1D1 291 aa15.12■□□□□ 0.01
PTPN1-202ENST00000541713 TRAF5O00463 557 aa15.12■□□□□ 0.01
PTPN1-202ENST00000541713 KIF20AO95235 890 aa15.12■□□□□ 0.01
PTPN1-202ENST00000541713 PBX1P40424 430 aa15.12■□□□□ 0.01
PTPN1-202ENST00000541713 KCNJ6P48051 423 aa15.12■□□□□ 0.01
PTPN1-202ENST00000541713 SPAG1Q07617 926 aa15.12■□□□□ 0.01
PTPN1-202ENST00000541713 DUSP9Q99956 384 aaKnown RBP15.12■□□□□ 0.01
PTPN1-202ENST00000541713 LRRC4BQ9NT99 713 aa15.12■□□□□ 0.01
PTPN1-202ENST00000541713 LIMA1Q9UHB6 759 aaKnown RBP15.12■□□□□ 0.01
PTPN1-202ENST00000541713 PACSIN2Q9UNF0 486 aaPredicted RBP15.12■□□□□ 0.01
PTPN1-202ENST00000541713 MYMKA6NI61 221 aa15.12■□□□□ 0.01
PTPN1-202ENST00000541713 UBXN2AP68543 259 aa15.12■□□□□ 0.01
PTPN1-202ENST00000541713 TBC1D10BQ4KMP7 808 aaPredicted RBP15.12■□□□□ 0.01
PTPN1-202ENST00000541713 PRR5LQ6MZQ0 368 aa15.12■□□□□ 0.01
PTPN1-202ENST00000541713 WDR59Q6PJI9 974 aa15.12■□□□□ 0.01
PTPN1-202ENST00000541713 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.12■□□□□ 0.01
PTPN1-202ENST00000541713 RSRC2Q7L4I2 434 aaKnown RBP15.12■□□□□ 0.01
PTPN1-202ENST00000541713 P2RX5Q93086 422 aa15.12■□□□□ 0.01
PTPN1-202ENST00000541713 CDCA7Q9BWT1 371 aaPredicted RBP15.12■□□□□ 0.01
PTPN1-202ENST00000541713 GOLPH3Q9H4A6 298 aa15.12■□□□□ 0.01
PTPN1-202ENST00000541713 BCAS3Q9H6U6 928 aa15.12■□□□□ 0.01
PTPN1-202ENST00000541713 USP17L10C9JJH3 530 aa15.11■□□□□ 0.01
PTPN1-202ENST00000541713 E9PMD0 336 aa15.11■□□□□ 0.01
PTPN1-202ENST00000541713 HERVK_113P62684 666 aa15.11■□□□□ 0.01
PTPN1-202ENST00000541713 CYP4A11Q02928 519 aa15.11■□□□□ 0.01
PTPN1-202ENST00000541713 CCDC40Q4G0X9 1142 aa15.11■□□□□ 0.01
PTPN1-202ENST00000541713 KCND1Q9NSA2 647 aa15.11■□□□□ 0.01
PTPN1-202ENST00000541713 KLRC4O43908 158 aa15.11■□□□□ 0.01
PTPN1-202ENST00000541713 SERPINB2P05120 415 aa15.11■□□□□ 0.01
PTPN1-202ENST00000541713 LDHCP07864 332 aa15.11■□□□□ 0.01
PTPN1-202ENST00000541713 GRAPQ13588 217 aa15.11■□□□□ 0.01
PTPN1-202ENST00000541713 HSP90B2PQ58FF3 399 aa15.11■□□□□ 0.01
PTPN1-202ENST00000541713 SV2BQ7L1I2 683 aa15.11■□□□□ 0.01
PTPN1-202ENST00000541713 GRAPLQ8TC17 118 aaPredicted RBP15.11■□□□□ 0.01
PTPN1-202ENST00000541713 FLT1P17948 1338 aa15.11■□□□□ 0.01
PTPN1-202ENST00000541713 GNAQP50148 359 aa15.11■□□□□ 0.01
PTPN1-202ENST00000541713 SPA17Q15506 151 aa15.11■□□□□ 0.01
PTPN1-202ENST00000541713 ZYXQ15942 572 aaKnown RBP15.11■□□□□ 0.01
PTPN1-202ENST00000541713 ZFPM1Q8IX07 1006 aa15.11■□□□□ 0.01
PTPN1-202ENST00000541713 CEP112Q8N8E3 955 aa15.11■□□□□ 0.01
PTPN1-202ENST00000541713 FGFBP2Q9BYJ0 223 aa15.11■□□□□ 0.01
PTPN1-202ENST00000541713 USP40Q9NVE5 1235 aa15.11■□□□□ 0.01
PTPN1-202ENST00000541713 SFI1A8K8P3 1242 aa15.1■□□□□ 0.01
PTPN1-202ENST00000541713 LGALS16A8MUM7 142 aa15.1■□□□□ 0.01
PTPN1-202ENST00000541713 CAPN2P17655 700 aa15.1■□□□□ 0.01
PTPN1-202ENST00000541713 ADAM21Q9UKJ8 722 aa15.1■□□□□ 0.01
PTPN1-202ENST00000541713 MYH8P13535 1937 aa15.1■□□□□ 0.01
PTPN1-202ENST00000541713 VGLL3A8MV65 326 aa15.1■□□□□ 0.01
PTPN1-202ENST00000541713 GDF11O95390 407 aa15.1■□□□□ 0.01
PTPN1-202ENST00000541713 NFIAQ12857 509 aa15.1■□□□□ 0.01
PTPN1-202ENST00000541713 TCERG1LQ5VWI1 586 aa15.1■□□□□ 0.01
PTPN1-202ENST00000541713 KIAA0895Q8NCT3 520 aa15.1■□□□□ 0.01
PTPN1-202ENST00000541713 RTFDC1Q9BY42 306 aaPredicted RBP15.1■□□□□ 0.01
PTPN1-202ENST00000541713 SEMA6BQ9H3T3 888 aa15.1■□□□□ 0.01
PTPN1-202ENST00000541713 DDX4Q9NQI0 724 aaKnown RBP15.1■□□□□ 0.01
PTPN1-202ENST00000541713 MYH3P11055 1940 aa15.1■□□□□ 0.01
PTPN1-202ENST00000541713 RASSF7Q02833 373 aa15.09■□□□□ 0.01
PTPN1-202ENST00000541713 GFPT1Q06210 699 aaPredicted RBP15.09■□□□□ 0.01
PTPN1-202ENST00000541713 PLS1Q14651 629 aa15.09■□□□□ 0.01
PTPN1-202ENST00000541713 TTI2Q6NXR4 508 aa15.09■□□□□ 0.01
PTPN1-202ENST00000541713 IKZF4Q9H2S9 585 aa15.09■□□□□ 0.01
PTPN1-202ENST00000541713 PKD2L1Q9P0L9 805 aa15.09■□□□□ 0.01
PTPN1-202ENST00000541713 SAR1BQ9Y6B6 198 aa15.09■□□□□ 0.01
PTPN1-202ENST00000541713 TRIM37O94972 964 aa15.09■□□□□ 0.01
PTPN1-202ENST00000541713 GNA11P29992 359 aa15.09■□□□□ 0.01
PTPN1-202ENST00000541713 EIF4A3P38919 411 aaKnown RBP15.09■□□□□ 0.01
PTPN1-202ENST00000541713 TRAPPC10P48553 1259 aa15.09■□□□□ 0.01
PTPN1-202ENST00000541713 HDAC7Q8WUI4 952 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms