RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-210ENST00000541488 DIS3Q9Y2L1 958 aaKnown RBP6.48□□□□□ -1.37
PRKDC-210ENST00000541488 TBC1D8O95759 1140 aa6.47□□□□□ -1.37
PRKDC-210ENST00000541488 SSBP05455 408 aaKnown RBP eCLIP6.47□□□□□ -1.37
PRKDC-210ENST00000541488 ATF4P18848 351 aaPredicted RBP6.47□□□□□ -1.37
PRKDC-210ENST00000541488 CDR1P51861 262 aa6.47□□□□□ -1.37
PRKDC-210ENST00000541488 VMACQ2NL98 169 aa6.47□□□□□ -1.37
PRKDC-210ENST00000541488 CYP2R1Q6VVX0 501 aa6.47□□□□□ -1.37
PRKDC-210ENST00000541488 ADAM7Q9H2U9 754 aa6.47□□□□□ -1.37
PRKDC-210ENST00000541488 AKT3Q9Y243 479 aa6.47□□□□□ -1.37
PRKDC-210ENST00000541488 IRAK3Q9Y616 596 aa6.47□□□□□ -1.37
PRKDC-210ENST00000541488 A0A087WZG4 1122 aa6.46□□□□□ -1.38
PRKDC-210ENST00000541488 AURKAO14965 403 aa6.46□□□□□ -1.38
PRKDC-210ENST00000541488 SMAD7O15105 426 aaKnown RBP6.46□□□□□ -1.38
PRKDC-210ENST00000541488 KCNH1O95259 989 aa6.46□□□□□ -1.38
PRKDC-210ENST00000541488 RBM25P49756 843 aaKnown RBP6.46□□□□□ -1.38
PRKDC-210ENST00000541488 YBX1P67809 324 aaKnown RBP6.46□□□□□ -1.38
PRKDC-210ENST00000541488 AMPD2Q01433 879 aa6.46□□□□□ -1.38
PRKDC-210ENST00000541488 LARP1BQ659C4 914 aaKnown RBP6.46□□□□□ -1.38
PRKDC-210ENST00000541488 SUSD2Q9UGT4 822 aa6.46□□□□□ -1.38
PRKDC-210ENST00000541488 PLA2G2DQ9UNK4 145 aa6.46□□□□□ -1.38
PRKDC-210ENST00000541488 RWDD3Q9Y3V2 267 aa6.46□□□□□ -1.38
PRKDC-210ENST00000541488 C2orf71A6NGG8 1288 aa6.45□□□□□ -1.38
PRKDC-210ENST00000541488 B2RBV5 119 aa6.45□□□□□ -1.38
PRKDC-210ENST00000541488 N4BP3O15049 544 aa6.45□□□□□ -1.38
PRKDC-210ENST00000541488 L1CAMP32004 1257 aa6.45□□□□□ -1.38
PRKDC-210ENST00000541488 SEPHS1P49903 392 aa6.45□□□□□ -1.38
PRKDC-210ENST00000541488 CASP7P55210 303 aa6.45□□□□□ -1.38
PRKDC-210ENST00000541488 ZNF200P98182 395 aaPredicted RBP6.45□□□□□ -1.38
PRKDC-210ENST00000541488 PLEKHN1Q494U1 663 aaPredicted RBP6.45□□□□□ -1.38
PRKDC-210ENST00000541488 MZB1Q8WU39 189 aa6.45□□□□□ -1.38
PRKDC-210ENST00000541488 SIGLEC10Q96LC7 697 aa6.45□□□□□ -1.38
PRKDC-210ENST00000541488 TEPSINQ96N21 525 aa6.45□□□□□ -1.38
PRKDC-210ENST00000541488 BCAS3Q9H6U6 928 aa6.45□□□□□ -1.38
PRKDC-210ENST00000541488 BACE2Q9Y5Z0 518 aa6.45□□□□□ -1.38
PRKDC-210ENST00000541488 ZC3H12DA2A288 527 aaKnown RBP6.44□□□□□ -1.38
PRKDC-210ENST00000541488 ANKRD34BA5PLL1 514 aa6.44□□□□□ -1.38
PRKDC-210ENST00000541488 DBHP09172 617 aa6.44□□□□□ -1.38
PRKDC-210ENST00000541488 TCF3P15923 654 aa6.44□□□□□ -1.38
PRKDC-210ENST00000541488 PLP2Q04941 152 aa6.44□□□□□ -1.38
PRKDC-210ENST00000541488 OLFML2BQ68BL8 750 aa6.44□□□□□ -1.38
PRKDC-210ENST00000541488 ZC3H14Q6PJT7 736 aaKnown RBP6.44□□□□□ -1.38
PRKDC-210ENST00000541488 C6orf15Q6UXA7 325 aaPredicted RBP6.44□□□□□ -1.38
PRKDC-210ENST00000541488 LDHDQ86WU2 507 aa6.44□□□□□ -1.38
PRKDC-210ENST00000541488 SYT8Q8NBV8 401 aa6.44□□□□□ -1.38
PRKDC-210ENST00000541488 APBA2Q99767 749 aa6.44□□□□□ -1.38
PRKDC-210ENST00000541488 GPRC5CQ9NQ84 441 aa6.44□□□□□ -1.38
PRKDC-210ENST00000541488 GULP1Q9UBP9 304 aa6.44□□□□□ -1.38
PRKDC-210ENST00000541488 FBLN5Q9UBX5 448 aa6.44□□□□□ -1.38
PRKDC-210ENST00000541488 DBR1Q9UK59 544 aaKnown RBP6.44□□□□□ -1.38
PRKDC-210ENST00000541488 STRIP2Q9ULQ0 834 aa6.44□□□□□ -1.38
PRKDC-210ENST00000541488 F8W031 263 aaPredicted RBP6.43□□□□□ -1.38
PRKDC-210ENST00000541488 ABLIM1O14639 778 aa6.43□□□□□ -1.38
PRKDC-210ENST00000541488 ETFBP38117 255 aa6.43□□□□□ -1.38
PRKDC-210ENST00000541488 AFF3P51826 1226 aaKnown RBP6.43□□□□□ -1.38
PRKDC-210ENST00000541488 EEF1DP3Q658K8 133 aa6.43□□□□□ -1.38
PRKDC-210ENST00000541488 VPS37DQ86XT2 251 aa6.43□□□□□ -1.38
PRKDC-210ENST00000541488 IGDCC3Q8IVU1 814 aa6.43□□□□□ -1.38
PRKDC-210ENST00000541488 ARHGEF39Q8N4T4 335 aa6.43□□□□□ -1.38
PRKDC-210ENST00000541488 DACT3Q96B18 629 aaPredicted RBP6.43□□□□□ -1.38
PRKDC-210ENST00000541488 GPR20Q99678 358 aa6.43□□□□□ -1.38
PRKDC-210ENST00000541488 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.43□□□□□ -1.38
PRKDC-210ENST00000541488 BDH2Q9BUT1 245 aa6.43□□□□□ -1.38
PRKDC-210ENST00000541488 PDLIM7Q9NR12 457 aa6.43□□□□□ -1.38
PRKDC-210ENST00000541488 ACTR10Q9NZ32 417 aa6.43□□□□□ -1.38
PRKDC-210ENST00000541488 CLEC1BQ9P126 229 aa6.43□□□□□ -1.38
PRKDC-210ENST00000541488 HRKO00198 91 aa6.42□□□□□ -1.38
PRKDC-210ENST00000541488 BUB1BO60566 1050 aaPredicted RBP6.42□□□□□ -1.38
PRKDC-210ENST00000541488 LIMS1P48059 325 aa6.42□□□□□ -1.38
PRKDC-210ENST00000541488 ZXDAP98168 799 aa6.42□□□□□ -1.38
PRKDC-210ENST00000541488 TMEM62Q0P6H9 643 aa6.42□□□□□ -1.38
PRKDC-210ENST00000541488 SCRN1Q12765 414 aa6.42□□□□□ -1.38
PRKDC-210ENST00000541488 RCSD1Q6JBY9 416 aa6.42□□□□□ -1.38
PRKDC-210ENST00000541488 TMEFF1Q8IYR6 380 aa6.42□□□□□ -1.38
PRKDC-210ENST00000541488 ZNF513Q8N8E2 541 aaPredicted RBP6.42□□□□□ -1.38
PRKDC-210ENST00000541488 BVESQ8NE79 360 aa6.42□□□□□ -1.38
PRKDC-210ENST00000541488 EPB41L4AQ9HCS5 686 aaPredicted RBP6.42□□□□□ -1.38
PRKDC-210ENST00000541488 BTG4Q9NY30 223 aa6.42□□□□□ -1.38
PRKDC-210ENST00000541488 NPHP3-ACAD11A0A0J9YXS1 232 aa6.41□□□□□ -1.38
PRKDC-210ENST00000541488 NOP56O00567 594 aaKnown RBP6.41□□□□□ -1.38
PRKDC-210ENST00000541488 PPP1R11O60927 126 aaPredicted RBP6.41□□□□□ -1.38
PRKDC-210ENST00000541488 DDAH1O94760 285 aa6.41□□□□□ -1.38
PRKDC-210ENST00000541488 PAMP19021 973 aa6.41□□□□□ -1.38
PRKDC-210ENST00000541488 DNAJA1P31689 397 aaKnown RBP6.41□□□□□ -1.38
PRKDC-210ENST00000541488 PRR5P85299 388 aa6.41□□□□□ -1.38
PRKDC-210ENST00000541488 CNKSR3Q6P9H4 555 aa6.41□□□□□ -1.38
PRKDC-210ENST00000541488 PAQR3Q6TCH7 311 aa6.41□□□□□ -1.38
PRKDC-210ENST00000541488 HHIPL2Q6UWX4 724 aa6.41□□□□□ -1.38
PRKDC-210ENST00000541488 SP8Q8IXZ3 490 aa6.41□□□□□ -1.38
PRKDC-210ENST00000541488 MICAL1Q8TDZ2 1067 aa6.41□□□□□ -1.38
PRKDC-210ENST00000541488 USP33Q8TEY7 942 aa6.41□□□□□ -1.38
PRKDC-210ENST00000541488 RCC1LQ96I51 464 aaKnown RBP6.41□□□□□ -1.38
PRKDC-210ENST00000541488 PCDHA5Q9Y5H7 936 aa6.41□□□□□ -1.38
PRKDC-210ENST00000541488 TBX1O43435 398 aa6.4□□□□□ -1.38
PRKDC-210ENST00000541488 CYBBP04839 570 aa6.4□□□□□ -1.38
PRKDC-210ENST00000541488 PLS3P13797 630 aa6.4□□□□□ -1.38
PRKDC-210ENST00000541488 MC3RP41968 323 aa6.4□□□□□ -1.38
PRKDC-210ENST00000541488 MAPKAPK2P49137 400 aa6.4□□□□□ -1.38
PRKDC-210ENST00000541488 GRB10Q13322 594 aa6.4□□□□□ -1.38
PRKDC-210ENST00000541488 GNL2Q13823 731 aaKnown RBP6.4□□□□□ -1.38
PRKDC-210ENST00000541488 CBX2Q14781 532 aaPredicted RBP6.4□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms