RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 CERS3Q8IU89 383 aa14.03□□□□□ -0.16
RNF4-222ENST00000541204 CTAGE4Q8IX94 777 aa14.03□□□□□ -0.16
RNF4-222ENST00000541204 TMEM260Q9NX78 707 aa14.03□□□□□ -0.16
RNF4-222ENST00000541204 M0R2N6 131 aa14.02□□□□□ -0.16
RNF4-222ENST00000541204 N4BP1O75113 896 aaKnown RBP14.02□□□□□ -0.16
RNF4-222ENST00000541204 LMAN1P49257 510 aa14.02□□□□□ -0.16
RNF4-222ENST00000541204 ZFPM1Q8IX07 1006 aa14.02□□□□□ -0.16
RNF4-222ENST00000541204 NOA1Q8NC60 698 aaKnown RBP14.02□□□□□ -0.16
RNF4-222ENST00000541204 COA7Q96BR5 231 aa14.02□□□□□ -0.16
RNF4-222ENST00000541204 VPS18Q9P253 973 aa14.02□□□□□ -0.16
RNF4-222ENST00000541204 GUCA1BQ9UMX6 200 aa14.02□□□□□ -0.16
RNF4-222ENST00000541204 L1RE1Q9UN81 338 aa14.02□□□□□ -0.16
RNF4-222ENST00000541204 ERLIN1O75477 346 aa14.02□□□□□ -0.17
RNF4-222ENST00000541204 TRIM14Q14142 442 aa14.02□□□□□ -0.17
RNF4-222ENST00000541204 SOGA3Q5TF21 947 aa14.02□□□□□ -0.17
RNF4-222ENST00000541204 PES1O00541 588 aaKnown RBP14.01□□□□□ -0.17
RNF4-222ENST00000541204 WHAMMP3Q1A5X7 153 aa14.01□□□□□ -0.17
RNF4-222ENST00000541204 SHROOM1Q2M3G4 852 aaPredicted RBP14.01□□□□□ -0.17
RNF4-222ENST00000541204 CDC42EP5Q6NZY7 148 aa14.01□□□□□ -0.17
RNF4-222ENST00000541204 EXOC4Q96A65 974 aa14.01□□□□□ -0.17
RNF4-222ENST00000541204 MTMR4Q9NYA4 1195 aa14.01□□□□□ -0.17
RNF4-222ENST00000541204 MYO6Q9UM54 1294 aa14.01□□□□□ -0.17
RNF4-222ENST00000541204 TFR2Q9UP52 801 aa14.01□□□□□ -0.17
RNF4-222ENST00000541204 REXO2Q9Y3B8 237 aaKnown RBP14.01□□□□□ -0.17
RNF4-222ENST00000541204 BRWD3Q6RI45 1802 aa14.01□□□□□ -0.17
RNF4-222ENST00000541204 A0A0U1RQG5 324 aaPredicted RBP14.01□□□□□ -0.17
RNF4-222ENST00000541204 TTC26A0AVF1 554 aa14.01□□□□□ -0.17
RNF4-222ENST00000541204 TULP2O00295 520 aa14.01□□□□□ -0.17
RNF4-222ENST00000541204 NDUFA10O95299 355 aa14.01□□□□□ -0.17
RNF4-222ENST00000541204 PDHBP11177 359 aa14.01□□□□□ -0.17
RNF4-222ENST00000541204 ALDH1B1P30837 517 aa14.01□□□□□ -0.17
RNF4-222ENST00000541204 SLC16A2P36021 539 aa14.01□□□□□ -0.17
RNF4-222ENST00000541204 PMS1P54277 932 aaKnown RBP14.01□□□□□ -0.17
RNF4-222ENST00000541204 RAD51AP2Q09MP3 1159 aa14.01□□□□□ -0.17
RNF4-222ENST00000541204 ZSCAN26Q16670 478 aa14.01□□□□□ -0.17
RNF4-222ENST00000541204 IRF2BP1Q8IU81 584 aa14.01□□□□□ -0.17
RNF4-222ENST00000541204 AKT1S1Q96B36 256 aa14.01□□□□□ -0.17
RNF4-222ENST00000541204 SPZ1Q9BXG8 430 aa14.01□□□□□ -0.17
RNF4-222ENST00000541204 RMND1Q9NWS8 449 aa14.01□□□□□ -0.17
RNF4-222ENST00000541204 MYO1AQ9UBC5 1043 aa14.01□□□□□ -0.17
RNF4-222ENST00000541204 SERPINB13Q9UIV8 391 aa14.01□□□□□ -0.17
RNF4-222ENST00000541204 EPN1Q9Y6I3 576 aaPredicted RBP14.01□□□□□ -0.17
RNF4-222ENST00000541204 DDX60LQ5H9U9 1706 aaKnown RBP14.01□□□□□ -0.17
RNF4-222ENST00000541204 ENC1O14682 589 aa14□□□□□ -0.17
RNF4-222ENST00000541204 CHRNA5P30532 468 aa14□□□□□ -0.17
RNF4-222ENST00000541204 PDE6BP35913 854 aa14□□□□□ -0.17
RNF4-222ENST00000541204 LONP1P36776 959 aaKnown RBP14□□□□□ -0.17
RNF4-222ENST00000541204 UBA7P41226 1012 aa14□□□□□ -0.17
RNF4-222ENST00000541204 AMPD2Q01433 879 aa14□□□□□ -0.17
RNF4-222ENST00000541204 LZTS2Q9BRK4 669 aa14□□□□□ -0.17
RNF4-222ENST00000541204 PYM1Q9BRP8 204 aaKnown RBP14□□□□□ -0.17
RNF4-222ENST00000541204 CAPN2P17655 700 aa14□□□□□ -0.17
RNF4-222ENST00000541204 ARL6IP4Q66PJ3 421 aaKnown RBP14□□□□□ -0.17
RNF4-222ENST00000541204 TTBK2Q6IQ55 1244 aa14□□□□□ -0.17
RNF4-222ENST00000541204 TMC4Q7Z404 712 aa14□□□□□ -0.17
RNF4-222ENST00000541204 TEKT1Q969V4 418 aa14□□□□□ -0.17
RNF4-222ENST00000541204 UIMC1Q96RL1 719 aa14□□□□□ -0.17
RNF4-222ENST00000541204 ZMYND12Q9H0C1 365 aa14□□□□□ -0.17
RNF4-222ENST00000541204 C6orf50Q9HD87 102 aa14□□□□□ -0.17
RNF4-222ENST00000541204 H7C1D1 291 aa14□□□□□ -0.17
RNF4-222ENST00000541204 TUBB4BP68371 445 aa14□□□□□ -0.17
RNF4-222ENST00000541204 CASP8Q14790 479 aa14□□□□□ -0.17
RNF4-222ENST00000541204 C2CD5Q86YS7 1000 aa14□□□□□ -0.17
RNF4-222ENST00000541204 MB21D1Q8N884 522 aa14□□□□□ -0.17
RNF4-222ENST00000541204 TBCKQ8TEA7 893 aa14□□□□□ -0.17
RNF4-222ENST00000541204 MASTLQ96GX5 879 aa14□□□□□ -0.17
RNF4-222ENST00000541204 DISC1Q9NRI5 854 aa14□□□□□ -0.17
RNF4-222ENST00000541204 HDAC6Q9UBN7 1215 aa14□□□□□ -0.17
RNF4-222ENST00000541204 TECP42680 631 aa13.99□□□□□ -0.17
RNF4-222ENST00000541204 NONOQ15233 471 aaKnown RBP eCLIP13.99□□□□□ -0.176e-7■■■□□ 19.2
RNF4-222ENST00000541204 MUM1L1Q5H9M0 696 aa13.99□□□□□ -0.17
RNF4-222ENST00000541204 APOBEC3HQ6NTF7 200 aaKnown RBP13.99□□□□□ -0.17
RNF4-222ENST00000541204 KCTD1Q719H9 257 aa13.99□□□□□ -0.17
RNF4-222ENST00000541204 ZSCAN29Q8IWY8 852 aaPredicted RBP13.99□□□□□ -0.17
RNF4-222ENST00000541204 ADSSL1Q8N142 457 aa13.99□□□□□ -0.17
RNF4-222ENST00000541204 EEF2KMTQ96G04 330 aa13.99□□□□□ -0.17
RNF4-222ENST00000541204 TMEM51Q9NW97 253 aa13.99□□□□□ -0.17
RNF4-222ENST00000541204 RNF216Q9NWF9 866 aaPredicted RBP13.99□□□□□ -0.17
RNF4-222ENST00000541204 EIF3JO75822 258 aaKnown RBP13.99□□□□□ -0.17
RNF4-222ENST00000541204 GABPAQ06546 454 aa13.99□□□□□ -0.17
RNF4-222ENST00000541204 CCDC96Q2M329 555 aa13.99□□□□□ -0.17
RNF4-222ENST00000541204 NAALADL2Q58DX5 795 aa13.99□□□□□ -0.17
RNF4-222ENST00000541204 OR8K1Q8NGG5 319 aa13.99□□□□□ -0.17
RNF4-222ENST00000541204 PSD3Q9NYI0 1048 aa13.99□□□□□ -0.17
RNF4-222ENST00000541204 FAN1Q9Y2M0 1017 aa13.99□□□□□ -0.17
RNF4-222ENST00000541204 LUC7L2Q9Y383 392 aaKnown RBP13.99□□□□□ -0.17
RNF4-222ENST00000541204 GNA11P29992 359 aa13.98□□□□□ -0.17
RNF4-222ENST00000541204 CRKP46108 304 aa13.98□□□□□ -0.17
RNF4-222ENST00000541204 REXO1Q8N1G1 1221 aaKnown RBP13.98□□□□□ -0.17
RNF4-222ENST00000541204 DAGLBQ8NCG7 672 aa13.98□□□□□ -0.17
RNF4-222ENST00000541204 PHACTR2O75167 634 aa13.98□□□□□ -0.17
RNF4-222ENST00000541204 SHMT1P34896 483 aa13.98□□□□□ -0.17
RNF4-222ENST00000541204 GALNT17Q6IS24 598 aa13.98□□□□□ -0.17
RNF4-222ENST00000541204 WDR59Q6PJI9 974 aa13.98□□□□□ -0.17
RNF4-222ENST00000541204 LRRC15Q8TF66 581 aa13.98□□□□□ -0.17
RNF4-222ENST00000541204 CCDC102AQ96A19 550 aa13.98□□□□□ -0.17
RNF4-222ENST00000541204 UTRNP46939 3433 aa13.97□□□□□ -0.17
RNF4-222ENST00000541204 LRRIQ3A6PVS8 624 aaPredicted RBP13.97□□□□□ -0.17
RNF4-222ENST00000541204 LGALS16A8MUM7 142 aa13.97□□□□□ -0.17
RNF4-222ENST00000541204 SRGAP2O75044 1071 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms