RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	NBPF6	Q5VWK0	638 aa		4.36	□□□□□ -1.71
CD44-238	ENST00000534296	PAQR3	Q6TCH7	311 aa		4.36	□□□□□ -1.71
CD44-238	ENST00000534296	TMC6	Q7Z403	805 aa		4.36	□□□□□ -1.71
CD44-238	ENST00000534296	NLGN2	Q8NFZ4	835 aa		4.36	□□□□□ -1.71
CD44-238	ENST00000534296	NBPF4	Q96M43	638 aa		4.36	□□□□□ -1.71
CD44-238	ENST00000534296	HIRIP3	Q9BW71	556 aa	Predicted RBP	4.36	□□□□□ -1.71
CD44-238	ENST00000534296	NKX2-4	Q9H2Z4	354 aa		4.36	□□□□□ -1.71
CD44-238	ENST00000534296	IRAK3	Q9Y616	596 aa		4.36	□□□□□ -1.71
CD44-238	ENST00000534296	NPIPB6	E9PJ23	425 aa		4.35	□□□□□ -1.71
CD44-238	ENST00000534296	NUAK1	O60285	661 aa		4.35	□□□□□ -1.71
CD44-238	ENST00000534296	C1QTNF9	P0C862	333 aa		4.35	□□□□□ -1.71
CD44-238	ENST00000534296	PFKL	P17858	780 aa		4.35	□□□□□ -1.71
CD44-238	ENST00000534296	TACR1	P25103	407 aa		4.35	□□□□□ -1.71
CD44-238	ENST00000534296	VIPR1	P32241	457 aa		4.35	□□□□□ -1.71
CD44-238	ENST00000534296	GTF2A2	P52657	109 aa		4.35	□□□□□ -1.71
CD44-238	ENST00000534296	MVK	Q03426	396 aa		4.35	□□□□□ -1.71
CD44-238	ENST00000534296	RAB33A	Q14088	237 aa		4.35	□□□□□ -1.71
CD44-238	ENST00000534296	TARBP2	Q15633	366 aa	Known RBP	4.35	□□□□□ -1.71
CD44-238	ENST00000534296	ZNF385B	Q569K4	471 aa		4.35	□□□□□ -1.71
CD44-238	ENST00000534296	E4F1	Q66K89	784 aa	Predicted RBP	4.35	□□□□□ -1.71
CD44-238	ENST00000534296	ZNF227	Q86WZ6	799 aa		4.35	□□□□□ -1.71
CD44-238	ENST00000534296	TMEM151B	Q8IW70	566 aa		4.35	□□□□□ -1.71
CD44-238	ENST00000534296	TMEM52	Q8NDY8	209 aa		4.35	□□□□□ -1.71
CD44-238	ENST00000534296	BTN2A2	Q8WVV5	523 aa		4.35	□□□□□ -1.71
CD44-238	ENST00000534296	ARMC5	Q96C12	935 aa		4.35	□□□□□ -1.71
CD44-238	ENST00000534296	MMP19	Q99542	508 aa		4.35	□□□□□ -1.71
CD44-238	ENST00000534296	ST7	Q9NRC1	585 aa		4.35	□□□□□ -1.71
CD44-238	ENST00000534296	CLEC1B	Q9P126	229 aa		4.35	□□□□□ -1.71
CD44-238	ENST00000534296	CNOT6	Q9ULM6	557 aa	Known RBP	4.35	□□□□□ -1.71
CD44-238	ENST00000534296	MEFV	O15553	781 aa	Predicted RBP	4.34	□□□□□ -1.71
CD44-238	ENST00000534296	ITGAV	P06756	1048 aa		4.34	□□□□□ -1.71
CD44-238	ENST00000534296	THBD	P07204	575 aa		4.34	□□□□□ -1.71
CD44-238	ENST00000534296	DBH	P09172	617 aa		4.34	□□□□□ -1.71
CD44-238	ENST00000534296	PLS3	P13797	630 aa		4.34	□□□□□ -1.71
CD44-238	ENST00000534296	SDHB	P21912	280 aa		4.34	□□□□□ -1.71
CD44-238	ENST00000534296	ECI1	P42126	302 aa		4.34	□□□□□ -1.71
CD44-238	ENST00000534296	LINC00310	P59036	64 aa		4.34	□□□□□ -1.71
CD44-238	ENST00000534296	RPL11	P62913	178 aa	Known RBP	4.34	□□□□□ -1.71
CD44-238	ENST00000534296	FZD5	Q13467	585 aa		4.34	□□□□□ -1.71
CD44-238	ENST00000534296	HSP90AA2P	Q14568	343 aa	Predicted RBP	4.34	□□□□□ -1.71
CD44-238	ENST00000534296	CBX2	Q14781	532 aa	Predicted RBP	4.34	□□□□□ -1.71
CD44-238	ENST00000534296	SLC10A6	Q3KNW5	377 aa		4.34	□□□□□ -1.71
CD44-238	ENST00000534296	PLEKHN1	Q494U1	663 aa	Predicted RBP	4.34	□□□□□ -1.71
CD44-238	ENST00000534296	SOGA3	Q5TF21	947 aa		4.34	□□□□□ -1.71
CD44-238	ENST00000534296	RPTN	Q6XPR3	784 aa		4.34	□□□□□ -1.71
CD44-238	ENST00000534296	DPH6	Q7L8W6	267 aa		4.34	□□□□□ -1.71
CD44-238	ENST00000534296	CPNE8	Q86YQ8	564 aa		4.34	□□□□□ -1.71
CD44-238	ENST00000534296	DCP2	Q8IU60	420 aa	Known RBP	4.34	□□□□□ -1.71
CD44-238	ENST00000534296	LRRC56	Q8IYG6	542 aa	Predicted RBP	4.34	□□□□□ -1.71
CD44-238	ENST00000534296	LRRC47	Q8N1G4	583 aa	Known RBP	4.34	□□□□□ -1.71
CD44-238	ENST00000534296	NLGN1	Q8N2Q7	840 aa		4.34	□□□□□ -1.71
CD44-238	ENST00000534296	ZNF513	Q8N8E2	541 aa	Predicted RBP	4.34	□□□□□ -1.71
CD44-238	ENST00000534296	NETO2	Q8NC67	525 aa		4.34	□□□□□ -1.71
CD44-238	ENST00000534296	ST13P5	Q8NFI4	369 aa	Predicted RBP	4.34	□□□□□ -1.71
CD44-238	ENST00000534296	COPS5	Q92905	334 aa		4.34	□□□□□ -1.71
CD44-238	ENST00000534296	PEX11G	Q96HA9	241 aa		4.34	□□□□□ -1.71
CD44-238	ENST00000534296	SGSM3	Q96HU1	749 aa		4.34	□□□□□ -1.71
CD44-238	ENST00000534296	MRGPRX3	Q96LB0	322 aa		4.34	□□□□□ -1.71
CD44-238	ENST00000534296	SIGLEC10	Q96LC7	697 aa		4.34	□□□□□ -1.71
CD44-238	ENST00000534296	MCMBP	Q9BTE3	642 aa		4.34	□□□□□ -1.71
CD44-238	ENST00000534296	AP5M1	Q9H0R1	490 aa		4.34	□□□□□ -1.71
CD44-238	ENST00000534296	CD320	Q9NPF0	282 aa		4.34	□□□□□ -1.71
CD44-238	ENST00000534296	IGF2BP1	Q9NZI8	577 aa	Known RBP eCLIP	4.34	□□□□□ -1.71
CD44-238	ENST00000534296	KLHL14	Q9P2G3	628 aa		4.34	□□□□□ -1.71
CD44-238	ENST00000534296	SMG5	Q9UPR3	1016 aa	Known RBP	4.34	□□□□□ -1.71
CD44-238	ENST00000534296	FAN1	Q9Y2M0	1017 aa		4.34	□□□□□ -1.71
CD44-238	ENST00000534296	RWDD3	Q9Y3V2	267 aa		4.34	□□□□□ -1.71
CD44-238	ENST00000534296	MYOCOS	A0A1B0GUC4	107 aa		4.33	□□□□□ -1.72
CD44-238	ENST00000534296		F8W031	263 aa	Predicted RBP	4.33	□□□□□ -1.72
CD44-238	ENST00000534296	N4BP3	O15049	544 aa		4.33	□□□□□ -1.72
CD44-238	ENST00000534296	ZBTB7A	O95365	584 aa		4.33	□□□□□ -1.72
CD44-238	ENST00000534296	EFEMP2	O95967	443 aa		4.33	□□□□□ -1.72
CD44-238	ENST00000534296	APP	P05067	770 aa		4.33	□□□□□ -1.72
CD44-238	ENST00000534296	GTF2F1	P35269	517 aa	Known RBP eCLIP	4.33	□□□□□ -1.72
CD44-238	ENST00000534296	JAG1	P78504	1218 aa		4.33	□□□□□ -1.72
CD44-238	ENST00000534296	SLC9A5	Q14940	896 aa		4.33	□□□□□ -1.72
CD44-238	ENST00000534296	KIR3DS1	Q14943	382 aa		4.33	□□□□□ -1.72
CD44-238	ENST00000534296	ACBD5	Q5T8D3	534 aa	Predicted RBP	4.33	□□□□□ -1.72
CD44-238	ENST00000534296	WWC2	Q6AWC2	1192 aa		4.33	□□□□□ -1.72
CD44-238	ENST00000534296	MZB1	Q8WU39	189 aa		4.33	□□□□□ -1.72
CD44-238	ENST00000534296	KCTD13	Q8WZ19	329 aa		4.33	□□□□□ -1.72
CD44-238	ENST00000534296	DIO2	Q92813	273 aa		4.33	□□□□□ -1.72
CD44-238	ENST00000534296	IPO9	Q96P70	1041 aa	Known RBP	4.33	□□□□□ -1.72
CD44-238	ENST00000534296	GPRC5C	Q9NQ84	441 aa		4.33	□□□□□ -1.72
CD44-238	ENST00000534296	GULP1	Q9UBP9	304 aa		4.33	□□□□□ -1.72
CD44-238	ENST00000534296	MBD1	Q9UIS9	605 aa	Predicted RBP	4.33	□□□□□ -1.72
CD44-238	ENST00000534296	COA3	Q9Y2R0	106 aa	Predicted RBP	4.33	□□□□□ -1.72
CD44-238	ENST00000534296	C7orf72	A4D263	438 aa		4.32	□□□□□ -1.72
CD44-238	ENST00000534296	KLF4	O43474	513 aa		4.32	□□□□□ -1.72
CD44-238	ENST00000534296	FUCA1	P04066	466 aa		4.32	□□□□□ -1.72
CD44-238	ENST00000534296	SCG5	P05408	212 aa		4.32	□□□□□ -1.72
CD44-238	ENST00000534296	MSL3P1	P0C860	447 aa		4.32	□□□□□ -1.72
CD44-238	ENST00000534296	GLI4	P10075	376 aa		4.32	□□□□□ -1.72
CD44-238	ENST00000534296	LTBR	P36941	435 aa		4.32	□□□□□ -1.72
CD44-238	ENST00000534296	IFRD2	Q12894	506 aa	Predicted RBP	4.32	□□□□□ -1.72
CD44-238	ENST00000534296	CHRNA2	Q15822	529 aa		4.32	□□□□□ -1.72
CD44-238	ENST00000534296	TCERG1L	Q5VWI1	586 aa		4.32	□□□□□ -1.72
CD44-238	ENST00000534296	MRM1	Q6IN84	353 aa	Known RBP	4.32	□□□□□ -1.72
CD44-238	ENST00000534296	PPIL6	Q8IXY8	311 aa		4.32	□□□□□ -1.72
CD44-238	ENST00000534296	CELF2-AS1	Q8N7Q2	184 aa		4.32	□□□□□ -1.72

Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms