RNA–Protein interactions for RNA: ENST00000533309.5

TRIM3-213, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 1,647 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-213ENST00000533309 SKOR2Q2VWA4 1001 aaPredicted RBP18.2■□□□□ 0.5
TRIM3-213ENST00000533309 AXDND1Q5T1B0 1012 aaPredicted RBP18.2■□□□□ 0.5
TRIM3-213ENST00000533309 SNRNP48Q6IEG0 339 aaKnown RBP18.2■□□□□ 0.5
TRIM3-213ENST00000533309 CRYGNQ8WXF5 182 aa18.2■□□□□ 0.5
TRIM3-213ENST00000533309 HOMER2Q9NSB8 354 aa18.2■□□□□ 0.5
TRIM3-213ENST00000533309 CEP131Q9UPN4 1083 aa18.2■□□□□ 0.5
TRIM3-213ENST00000533309 CCL15-CCL14A0A0B4J2E2 113 aa18.19■□□□□ 0.5
TRIM3-213ENST00000533309 PEX10O60683 326 aa18.19■□□□□ 0.5
TRIM3-213ENST00000533309 MBD3O95983 291 aa18.19■□□□□ 0.5
TRIM3-213ENST00000533309 MCM7P33993 719 aa18.19■□□□□ 0.5
TRIM3-213ENST00000533309 HSD17B4P51659 736 aa18.19■□□□□ 0.5
TRIM3-213ENST00000533309 HERVK_113P62684 666 aa18.19■□□□□ 0.5
TRIM3-213ENST00000533309 CCL15Q16663 113 aa18.19■□□□□ 0.5
TRIM3-213ENST00000533309 TPRNQ4KMQ1 711 aa18.19■□□□□ 0.5
TRIM3-213ENST00000533309 MCTP2Q6DN12 878 aa18.19■□□□□ 0.5
TRIM3-213ENST00000533309 RASAL3Q86YV0 1011 aa18.19■□□□□ 0.5
TRIM3-213ENST00000533309 MB21D1Q8N884 522 aa18.19■□□□□ 0.5
TRIM3-213ENST00000533309 TEX13BQ9BXU2 312 aa18.19■□□□□ 0.5
TRIM3-213ENST00000533309 BTBD7Q9P203 1132 aa18.19■□□□□ 0.5
TRIM3-213ENST00000533309 GCOM1H8Y6P7 765 aaPredicted RBP18.18■□□□□ 0.5
TRIM3-213ENST00000533309 TOMM70O94826 608 aa18.18■□□□□ 0.5
TRIM3-213ENST00000533309 BMP15O95972 392 aa18.18■□□□□ 0.5
TRIM3-213ENST00000533309 FOSP01100 380 aaPredicted RBP18.18■□□□□ 0.5
TRIM3-213ENST00000533309 POLR2MP0CAP2 368 aa18.18■□□□□ 0.5
TRIM3-213ENST00000533309 ATP2C1P98194 919 aaPredicted RBP18.18■□□□□ 0.5
TRIM3-213ENST00000533309 PABPC4Q13310 644 aaKnown RBP eCLIP18.18■□□□□ 0.5
TRIM3-213ENST00000533309 LETM2Q2VYF4 491 aa18.18■□□□□ 0.5
TRIM3-213ENST00000533309 C4orf32Q8N8J7 132 aa18.18■□□□□ 0.5
TRIM3-213ENST00000533309 TRERF1Q96PN7 1200 aa18.18■□□□□ 0.5
TRIM3-213ENST00000533309 RNF146Q9NTX7 359 aa18.18■□□□□ 0.5
TRIM3-213ENST00000533309 FBXO2Q9UK22 296 aaPredicted RBP18.18■□□□□ 0.5
TRIM3-213ENST00000533309 BTBD19C9JJ37 291 aa18.17■□□□□ 0.5
TRIM3-213ENST00000533309 CNMDO75829 334 aa18.17■□□□□ 0.5
TRIM3-213ENST00000533309 PTPREP23469 700 aa18.17■□□□□ 0.5
TRIM3-213ENST00000533309 PTGDRQ13258 359 aa18.17■□□□□ 0.5
TRIM3-213ENST00000533309 ADALQ6DHV7 355 aa18.17■□□□□ 0.5
TRIM3-213ENST00000533309 JMYQ8N9B5 988 aa18.17■□□□□ 0.5
TRIM3-213ENST00000533309 COL20A1Q9P218 1284 aa18.17■□□□□ 0.5
TRIM3-213ENST00000533309 TLL2Q9Y6L7 1015 aa18.17■□□□□ 0.5
TRIM3-213ENST00000533309 SPDYE3A6NKU9 549 aa18.16■□□□□ 0.5
TRIM3-213ENST00000533309 OSBPP22059 807 aa18.16■□□□□ 0.5
TRIM3-213ENST00000533309 SREBF1P36956 1147 aa18.16■□□□□ 0.5
TRIM3-213ENST00000533309 STAT3P40763 770 aa18.16■□□□□ 0.5
TRIM3-213ENST00000533309 ZNF157P51786 506 aaPredicted RBP18.16■□□□□ 0.5
TRIM3-213ENST00000533309 GRIN1Q05586 938 aa18.16■□□□□ 0.5
TRIM3-213ENST00000533309 RGMBQ6NW40 437 aa18.16■□□□□ 0.5
TRIM3-213ENST00000533309 FCHSD1Q86WN1 690 aa18.16■□□□□ 0.5
TRIM3-213ENST00000533309 MCF2L2Q86YR7 1114 aa18.16■□□□□ 0.5
TRIM3-213ENST00000533309 CLIC6Q96NY7 704 aa18.16■□□□□ 0.5
TRIM3-213ENST00000533309 TMEM60Q9H2L4 133 aa18.16■□□□□ 0.5
TRIM3-213ENST00000533309 SLC45A1Q9Y2W3 748 aa18.16■□□□□ 0.5
TRIM3-213ENST00000533309 A0A1W2PQ27 194 aa18.16■□□□□ 0.5
TRIM3-213ENST00000533309 A0A1W2PQ64 194 aa18.16■□□□□ 0.5
TRIM3-213ENST00000533309 A0A1W2PQD8 194 aa18.16■□□□□ 0.5
TRIM3-213ENST00000533309 GOLGA6L4A6NEF3 574 aa18.16■□□□□ 0.5
TRIM3-213ENST00000533309 CCNT1O60563 726 aaKnown RBP18.16■□□□□ 0.5
TRIM3-213ENST00000533309 TDP2O95551 362 aa18.16■□□□□ 0.5
TRIM3-213ENST00000533309 LIG1P18858 919 aa18.16■□□□□ 0.5
TRIM3-213ENST00000533309 ORC2Q13416 577 aaPredicted RBP18.16■□□□□ 0.5
TRIM3-213ENST00000533309 PLS1Q14651 629 aa18.16■□□□□ 0.5
TRIM3-213ENST00000533309 ANKRD23Q86SG2 305 aa18.16■□□□□ 0.5
TRIM3-213ENST00000533309 KRI1Q8N9T8 703 aaKnown RBP18.16■□□□□ 0.5
TRIM3-213ENST00000533309 PTPN18Q99952 460 aa18.16■□□□□ 0.5
TRIM3-213ENST00000533309 TXNRD2Q9NNW7 524 aa18.16■□□□□ 0.5
TRIM3-213ENST00000533309 SRPRBQ9Y5M8 271 aaKnown RBP18.16■□□□□ 0.5
TRIM3-213ENST00000533309 TESPA1A2RU30 521 aaPredicted RBP18.15■□□□□ 0.5
TRIM3-213ENST00000533309 PDHXO00330 501 aa18.15■□□□□ 0.5
TRIM3-213ENST00000533309 CUTAO60888 179 aa18.15■□□□□ 0.5
TRIM3-213ENST00000533309 CYP2C8P10632 490 aa18.15■□□□□ 0.5
TRIM3-213ENST00000533309 ARHGAP4P98171 946 aa18.15■□□□□ 0.5
TRIM3-213ENST00000533309 TKFCQ3LXA3 575 aa18.15■□□□□ 0.5
TRIM3-213ENST00000533309 PPP4R3AQ6IN85 833 aa18.15■□□□□ 0.5
TRIM3-213ENST00000533309 SLC30A10Q6XR72 485 aa18.15■□□□□ 0.5
TRIM3-213ENST00000533309 FAM43AQ8N2R8 423 aa18.15■□□□□ 0.5
TRIM3-213ENST00000533309 SAMD3Q8N6K7 520 aa18.15■□□□□ 0.5
TRIM3-213ENST00000533309 SPATC1LQ9H0A9 340 aa18.15■□□□□ 0.5
TRIM3-213ENST00000533309 GOLPH3LQ9H4A5 285 aa18.15■□□□□ 0.5
TRIM3-213ENST00000533309 RBPJLQ9UBG7 517 aa18.15■□□□□ 0.5
TRIM3-213ENST00000533309 SLC37A4O43826 429 aa18.14■□□□□ 0.49
TRIM3-213ENST00000533309 SLC10A3P09131 477 aa18.14■□□□□ 0.49
TRIM3-213ENST00000533309 USP11P51784 963 aa18.14■□□□□ 0.49
TRIM3-213ENST00000533309 RPS6P62753 249 aaKnown RBP18.14■□□□□ 0.49
TRIM3-213ENST00000533309 SHC4Q6S5L8 630 aa18.14■□□□□ 0.49
TRIM3-213ENST00000533309 RIOX2Q8IUF8 465 aa18.14■□□□□ 0.49
TRIM3-213ENST00000533309 ZNF784Q8NCA9 323 aaPredicted RBP18.14■□□□□ 0.49
TRIM3-213ENST00000533309 SYTL5Q8TDW5 730 aaPredicted RBP18.14■□□□□ 0.49
TRIM3-213ENST00000533309 PAGR1Q9BTK6 254 aa18.14■□□□□ 0.49
TRIM3-213ENST00000533309 ACAD9Q9H845 621 aa18.14■□□□□ 0.49
TRIM3-213ENST00000533309 MAP3K20Q9NYL2 800 aaKnown RBP18.14■□□□□ 0.49
TRIM3-213ENST00000533309 PNMA3Q9UL41 463 aa18.14■□□□□ 0.49
TRIM3-213ENST00000533309 RPTORQ8N122 1335 aa18.14■□□□□ 0.49
TRIM3-213ENST00000533309 NEMFO60524 1076 aa18.13■□□□□ 0.49
TRIM3-213ENST00000533309 IL17AQ16552 155 aa18.13■□□□□ 0.49
TRIM3-213ENST00000533309 POTEDQ86YR6 584 aa18.13■□□□□ 0.49
TRIM3-213ENST00000533309 CCAR1Q8IX12 1150 aaKnown RBP18.13■□□□□ 0.49
TRIM3-213ENST00000533309 MRPS27Q92552 414 aaKnown RBP18.13■□□□□ 0.49
TRIM3-213ENST00000533309 MBOAT7Q96N66 472 aa18.13■□□□□ 0.49
TRIM3-213ENST00000533309 TMEM63CQ9P1W3 806 aa18.13■□□□□ 0.49
TRIM3-213ENST00000533309 RABGAP1Q9Y3P9 1069 aa18.13■□□□□ 0.49
TRIM3-213ENST00000533309 FRMPD4Q14CM0 1322 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms