RNA–Protein interactions for RNA: ENST00000529828.5

PTPRC-213, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best)

Gene PTPRC, Length 2,336 nt, Biotype non stop decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-213ENST00000529828 PRDM1O75626 825 aa4.23□□□□□ -1.73
PTPRC-213ENST00000529828 SMPD1P17405 629 aa4.23□□□□□ -1.73
PTPRC-213ENST00000529828 COPB2P35606 906 aa4.23□□□□□ -1.73
PTPRC-213ENST00000529828 SNAP25P60880 206 aa4.23□□□□□ -1.73
PTPRC-213ENST00000529828 TNFAIP2Q03169 654 aa4.23□□□□□ -1.73
PTPRC-213ENST00000529828 KLRC3Q07444 240 aa4.23□□□□□ -1.73
PTPRC-213ENST00000529828 TTF1Q15361 905 aaPredicted RBP4.23□□□□□ -1.73
PTPRC-213ENST00000529828 FSCN1Q16658 493 aaKnown RBP4.23□□□□□ -1.73
PTPRC-213ENST00000529828 AAK1Q2M2I8 961 aa4.23□□□□□ -1.73
PTPRC-213ENST00000529828 TMEM67Q5HYA8 995 aa4.23□□□□□ -1.73
PTPRC-213ENST00000529828 ZKSCAN2Q63HK3 967 aa4.23□□□□□ -1.73
PTPRC-213ENST00000529828 AMOTL1Q8IY63 956 aa4.23□□□□□ -1.73
PTPRC-213ENST00000529828 FTSJ3Q8IY81 847 aaKnown RBP4.23□□□□□ -1.73
PTPRC-213ENST00000529828 MSL3Q8N5Y2 521 aaKnown RBP4.23□□□□□ -1.73
PTPRC-213ENST00000529828 CCDC17Q96LX7 622 aa4.23□□□□□ -1.73
PTPRC-213ENST00000529828 BOLA2Q9H3K6 86 aa4.23□□□□□ -1.73
PTPRC-213ENST00000529828 ABHD16BQ9H3Z7 469 aa4.23□□□□□ -1.73
PTPRC-213ENST00000529828 KANSL2Q9H9L4 492 aa4.23□□□□□ -1.73
PTPRC-213ENST00000529828 CD320Q9NPF0 282 aa4.23□□□□□ -1.73
PTPRC-213ENST00000529828 MTUS1Q9ULD2 1270 aa4.23□□□□□ -1.73
PTPRC-213ENST00000529828 PCDHA11Q9Y5I1 949 aa4.23□□□□□ -1.73
PTPRC-213ENST00000529828 MYH8P13535 1937 aa4.23□□□□□ -1.73
PTPRC-213ENST00000529828 BAZ2AQ9UIF9 1905 aaKnown RBP4.23□□□□□ -1.73
PTPRC-213ENST00000529828 LRRC37A2A6NM11 1700 aa4.23□□□□□ -1.73
PTPRC-213ENST00000529828 SOWAHBA6NEL2 793 aa4.22□□□□□ -1.73
PTPRC-213ENST00000529828 GOLGA8CPA6NN73 597 aa4.22□□□□□ -1.73
PTPRC-213ENST00000529828 TLL1O43897 1013 aa4.22□□□□□ -1.73
PTPRC-213ENST00000529828 RASA1P20936 1047 aa4.22□□□□□ -1.73
PTPRC-213ENST00000529828 ADD2P35612 726 aa4.22□□□□□ -1.73
PTPRC-213ENST00000529828 CHMP4BP1P59074 171 aa4.22□□□□□ -1.73
PTPRC-213ENST00000529828 GRB10Q13322 594 aa4.22□□□□□ -1.73
PTPRC-213ENST00000529828 FAM47CQ5HY64 1035 aa4.22□□□□□ -1.73
PTPRC-213ENST00000529828 CTR9Q6PD62 1173 aa4.22□□□□□ -1.73
PTPRC-213ENST00000529828 RASGRP2Q7LDG7 609 aa4.22□□□□□ -1.73
PTPRC-213ENST00000529828 SLC43A3Q8NBI5 491 aa4.22□□□□□ -1.73
PTPRC-213ENST00000529828 RHPN1Q8TCX5 695 aa4.22□□□□□ -1.73
PTPRC-213ENST00000529828 TMC2Q8TDI7 906 aa4.22□□□□□ -1.73
PTPRC-213ENST00000529828 GDPD5Q8WTR4 605 aa4.22□□□□□ -1.73
PTPRC-213ENST00000529828 AGBL1Q96MI9 1066 aa4.22□□□□□ -1.73
PTPRC-213ENST00000529828 PURBQ96QR8 312 aaKnown RBP4.22□□□□□ -1.73
PTPRC-213ENST00000529828 UIMC1Q96RL1 719 aa4.22□□□□□ -1.73
PTPRC-213ENST00000529828 SLC4A5Q9BY07 1137 aa4.22□□□□□ -1.73
PTPRC-213ENST00000529828 AP5M1Q9H0R1 490 aa4.22□□□□□ -1.73
PTPRC-213ENST00000529828 SLC38A10Q9HBR0 1119 aa4.22□□□□□ -1.73
PTPRC-213ENST00000529828 ATP8A2Q9NTI2 1148 aa4.22□□□□□ -1.73
PTPRC-213ENST00000529828 PAG1Q9NWQ8 432 aa4.22□□□□□ -1.73
PTPRC-213ENST00000529828 CLIP2Q9UDT6 1046 aa4.22□□□□□ -1.73
PTPRC-213ENST00000529828 LCHNA4D1U4 455 aa4.22□□□□□ -1.73
PTPRC-213ENST00000529828 C2orf72A6NCS6 295 aa4.22□□□□□ -1.73
PTPRC-213ENST00000529828 MINDY4BA8MYZ0 360 aa4.22□□□□□ -1.73
PTPRC-213ENST00000529828 IFIT2P09913 472 aaKnown RBP4.22□□□□□ -1.73
PTPRC-213ENST00000529828 TAP1Q03518 808 aa4.22□□□□□ -1.73
PTPRC-213ENST00000529828 IKQ13123 557 aaPredicted RBP4.22□□□□□ -1.73
PTPRC-213ENST00000529828 ERC1Q8IUD2 1116 aa4.22□□□□□ -1.73
PTPRC-213ENST00000529828 RPUSD2Q8IZ73 545 aaKnown RBP4.22□□□□□ -1.73
PTPRC-213ENST00000529828 PRPF38AQ8NAV1 312 aaKnown RBP4.22□□□□□ -1.73
PTPRC-213ENST00000529828 HLA-CQ95604 372 aa4.22□□□□□ -1.73
PTPRC-213ENST00000529828 DDRGK1Q96HY6 314 aa4.22□□□□□ -1.73
PTPRC-213ENST00000529828 FTOQ9C0B1 505 aaKnown RBP eCLIP4.22□□□□□ -1.73
PTPRC-213ENST00000529828 PUS7LQ9H0K6 701 aaKnown RBP4.22□□□□□ -1.73
PTPRC-213ENST00000529828 ALDH8A1Q9H2A2 487 aaPredicted RBP4.22□□□□□ -1.73
PTPRC-213ENST00000529828 ACAD9Q9H845 621 aa4.22□□□□□ -1.73
PTPRC-213ENST00000529828 MKNK2Q9HBH9 465 aa4.22□□□□□ -1.73
PTPRC-213ENST00000529828 A1CFQ9NQ94 594 aaKnown RBP4.22□□□□□ -1.73
PTPRC-213ENST00000529828 RNF146Q9NTX7 359 aa4.22□□□□□ -1.73
PTPRC-213ENST00000529828 MTMR7Q9Y216 660 aa4.22□□□□□ -1.73
PTPRC-213ENST00000529828 GNEQ9Y223 722 aaKnown RBP4.22□□□□□ -1.73
PTPRC-213ENST00000529828 COG6Q9Y2V7 657 aa4.22□□□□□ -1.73
PTPRC-213ENST00000529828 CABYRO75952 493 aa4.21□□□□□ -1.74
PTPRC-213ENST00000529828 MYL3P08590 195 aa4.21□□□□□ -1.74
PTPRC-213ENST00000529828 ALAS1P13196 640 aa4.21□□□□□ -1.74
PTPRC-213ENST00000529828 TMED8Q6PL24 325 aaPredicted RBP4.21□□□□□ -1.74
PTPRC-213ENST00000529828 THSD4Q6ZMP0 1018 aa4.21□□□□□ -1.74
PTPRC-213ENST00000529828 CLASRPQ8N2M8 674 aaKnown RBP4.21□□□□□ -1.74
PTPRC-213ENST00000529828 FAM133AQ8N9E0 248 aa4.21□□□□□ -1.74
PTPRC-213ENST00000529828 CHST13Q8NET6 341 aa4.21□□□□□ -1.74
PTPRC-213ENST00000529828 PANK1Q8TE04 598 aa4.21□□□□□ -1.74
PTPRC-213ENST00000529828 ANKS1AQ92625 1134 aa4.21□□□□□ -1.74
PTPRC-213ENST00000529828 CEP95Q96GE4 821 aa4.21□□□□□ -1.74
PTPRC-213ENST00000529828 FBXO40Q9UH90 709 aa4.21□□□□□ -1.74
PTPRC-213ENST00000529828 COG5Q9UP83 839 aa4.21□□□□□ -1.74
PTPRC-213ENST00000529828 TNKSO95271 1327 aa4.21□□□□□ -1.74
PTPRC-213ENST00000529828 ZBED9Q6R2W3 1325 aa4.21□□□□□ -1.74
PTPRC-213ENST00000529828 SCN5AQ14524 2016 aa4.21□□□□□ -1.74
PTPRC-213ENST00000529828 COL4A4P53420 1690 aaPredicted RBP4.21□□□□□ -1.74
PTPRC-213ENST00000529828 TMEM232C9JQI7 657 aa4.21□□□□□ -1.74
PTPRC-213ENST00000529828 RIOK3O14730 519 aaKnown RBP4.21□□□□□ -1.74
PTPRC-213ENST00000529828 ATP2A1O14983 1001 aa4.21□□□□□ -1.74
PTPRC-213ENST00000529828 ZEB2O60315 1214 aa4.21□□□□□ -1.74
PTPRC-213ENST00000529828 LPXNO60711 386 aa4.21□□□□□ -1.74
PTPRC-213ENST00000529828 IL9P15248 144 aa4.21□□□□□ -1.74
PTPRC-213ENST00000529828 SSTR3P32745 418 aaPredicted RBP4.21□□□□□ -1.74
PTPRC-213ENST00000529828 PSEN2P49810 448 aa4.21□□□□□ -1.74
PTPRC-213ENST00000529828 MUM1L1Q5H9M0 696 aa4.21□□□□□ -1.74
PTPRC-213ENST00000529828 SLFN13Q68D06 897 aa4.21□□□□□ -1.74
PTPRC-213ENST00000529828 TAPT1Q6NXT6 567 aa4.21□□□□□ -1.74
PTPRC-213ENST00000529828 FAM117BQ6P1L5 589 aa4.21□□□□□ -1.74
PTPRC-213ENST00000529828 NSMFQ6X4W1 530 aa4.21□□□□□ -1.74
PTPRC-213ENST00000529828 KIAA1211Q6ZU35 1233 aa4.21□□□□□ -1.74
PTPRC-213ENST00000529828 KCTD1Q719H9 257 aa4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms