RNA–Protein interactions for RNA: ENST00000524023.1

HDAC9-228, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,199 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-228ENST00000524023 MCM6Q14566 821 aa12.38□□□□□ -0.43
HDAC9-228ENST00000524023 COBLL1Q53SF7 1204 aa12.38□□□□□ -0.43
HDAC9-228ENST00000524023 MIIPQ5JXC2 388 aa12.38□□□□□ -0.43
HDAC9-228ENST00000524023 CEP95Q96GE4 821 aa12.38□□□□□ -0.43
HDAC9-228ENST00000524023 PIGSQ96S52 555 aa12.38□□□□□ -0.43
HDAC9-228ENST00000524023 VAT1LQ9HCJ6 419 aa12.38□□□□□ -0.43
HDAC9-228ENST00000524023 CD209Q9NNX6 404 aa12.38□□□□□ -0.43
HDAC9-228ENST00000524023 ATP1A1P05023 1023 aaKnown RBP12.37□□□□□ -0.43
HDAC9-228ENST00000524023 RFC4P35249 363 aa12.37□□□□□ -0.43
HDAC9-228ENST00000524023 GPSM2P81274 684 aa12.37□□□□□ -0.43
HDAC9-228ENST00000524023 VPS72Q15906 364 aa12.37□□□□□ -0.43
HDAC9-228ENST00000524023 CNNM4Q6P4Q7 775 aa12.37□□□□□ -0.43
HDAC9-228ENST00000524023 KIAA1328Q86T90 577 aa12.37□□□□□ -0.43
HDAC9-228ENST00000524023 POTEDQ86YR6 584 aa12.37□□□□□ -0.43
HDAC9-228ENST00000524023 ZSCAN29Q8IWY8 852 aaPredicted RBP12.37□□□□□ -0.43
HDAC9-228ENST00000524023 CCDC170Q8IYT3 715 aa12.37□□□□□ -0.43
HDAC9-228ENST00000524023 REXO1Q8N1G1 1221 aaKnown RBP12.37□□□□□ -0.43
HDAC9-228ENST00000524023 CALML4Q96GE6 196 aa12.37□□□□□ -0.43
HDAC9-228ENST00000524023 NOC4LQ9BVI4 516 aaKnown RBP12.37□□□□□ -0.43
HDAC9-228ENST00000524023 GBP3Q9H0R5 595 aa12.37□□□□□ -0.43
HDAC9-228ENST00000524023 NHEJ1Q9H9Q4 299 aaPredicted RBP12.37□□□□□ -0.43
HDAC9-228ENST00000524023 SUGCTQ9HAC7 445 aa12.37□□□□□ -0.43
HDAC9-228ENST00000524023 PDE11AQ9HCR9 933 aa12.37□□□□□ -0.43
HDAC9-228ENST00000524023 ZNHIT6Q9NWK9 470 aaKnown RBP12.37□□□□□ -0.43
HDAC9-228ENST00000524023 CALCOCO1Q9P1Z2 691 aa12.37□□□□□ -0.43
HDAC9-228ENST00000524023 HDAC6Q9UBN7 1215 aa12.37□□□□□ -0.43
HDAC9-228ENST00000524023 BIN2Q9UBW5 565 aaPredicted RBP12.37□□□□□ -0.43
HDAC9-228ENST00000524023 ESYT2A0FGR8 921 aa12.37□□□□□ -0.43
HDAC9-228ENST00000524023 EIF3CLB5ME19 914 aaKnown RBP12.37□□□□□ -0.43
HDAC9-228ENST00000524023 KRT86O43790 486 aa12.37□□□□□ -0.43
HDAC9-228ENST00000524023 PLCG2P16885 1265 aa12.37□□□□□ -0.43
HDAC9-228ENST00000524023 NOVP48745 357 aa12.37□□□□□ -0.43
HDAC9-228ENST00000524023 GPS2Q13227 327 aa12.37□□□□□ -0.43
HDAC9-228ENST00000524023 FIGNQ5HY92 759 aa12.37□□□□□ -0.43
HDAC9-228ENST00000524023 PAPD7Q5XG87 772 aaKnown RBP12.37□□□□□ -0.43
HDAC9-228ENST00000524023 WDR93Q6P2C0 686 aa12.37□□□□□ -0.43
HDAC9-228ENST00000524023 CNBD1Q8NA66 436 aa12.37□□□□□ -0.43
HDAC9-228ENST00000524023 KIAA0895Q8NCT3 520 aa12.37□□□□□ -0.43
HDAC9-228ENST00000524023 EHBP1Q8NDI1 1231 aa12.37□□□□□ -0.43
HDAC9-228ENST00000524023 JAKMIP2Q96AA8 810 aa12.37□□□□□ -0.43
HDAC9-228ENST00000524023 ERGIC2Q96RQ1 377 aa12.37□□□□□ -0.43
HDAC9-228ENST00000524023 EIF3CQ99613 913 aaKnown RBP12.37□□□□□ -0.43
HDAC9-228ENST00000524023 SEMA6BQ9H3T3 888 aa12.37□□□□□ -0.43
HDAC9-228ENST00000524023 SAR1BQ9Y6B6 198 aa12.37□□□□□ -0.43
HDAC9-228ENST00000524023 A0A1W2PQJ5 194 aa12.36□□□□□ -0.43
HDAC9-228ENST00000524023 RCCD1A6NED2 376 aa12.36□□□□□ -0.43
HDAC9-228ENST00000524023 USP17L5A8MUK1 530 aa12.36□□□□□ -0.43
HDAC9-228ENST00000524023 NKRFO15226 690 aaKnown RBP eCLIP12.36□□□□□ -0.43
HDAC9-228ENST00000524023 IL1R1P14778 569 aa12.36□□□□□ -0.43
HDAC9-228ENST00000524023 TXKP42681 527 aa12.36□□□□□ -0.43
HDAC9-228ENST00000524023 GYS2P54840 703 aa12.36□□□□□ -0.43
HDAC9-228ENST00000524023 RHBDL3P58872 404 aa12.36□□□□□ -0.43
HDAC9-228ENST00000524023 TRAPPC3LQ5T215 181 aa12.36□□□□□ -0.43
HDAC9-228ENST00000524023 CENPPQ6IPU0 288 aa12.36□□□□□ -0.43
HDAC9-228ENST00000524023 SV2BQ7L1I2 683 aa12.36□□□□□ -0.43
HDAC9-228ENST00000524023 TXLNBQ8N3L3 684 aa12.36□□□□□ -0.43
HDAC9-228ENST00000524023 NEK11Q8NG66 645 aa12.36□□□□□ -0.43
HDAC9-228ENST00000524023 HPS3Q969F9 1004 aa12.36□□□□□ -0.43
HDAC9-228ENST00000524023 PCMTD1Q96MG8 357 aaPredicted RBP12.36□□□□□ -0.43
HDAC9-228ENST00000524023 MTMR9Q96QG7 549 aa12.36□□□□□ -0.43
HDAC9-228ENST00000524023 LACRTQ9GZZ8 138 aa12.36□□□□□ -0.43
HDAC9-228ENST00000524023 UBA5Q9GZZ9 404 aa12.36□□□□□ -0.43
HDAC9-228ENST00000524023 RIOX1Q9H6W3 641 aa12.36□□□□□ -0.43
HDAC9-228ENST00000524023 TMEM260Q9NX78 707 aa12.36□□□□□ -0.43
HDAC9-228ENST00000524023 ADAM21Q9UKJ8 722 aa12.36□□□□□ -0.43
HDAC9-228ENST00000524023 NHSQ6T4R5 1651 aa12.36□□□□□ -0.43
HDAC9-228ENST00000524023 UFL1O94874 794 aa12.36□□□□□ -0.43
HDAC9-228ENST00000524023 CDK17Q00537 523 aa12.36□□□□□ -0.43
HDAC9-228ENST00000524023 GRB10Q13322 594 aa12.36□□□□□ -0.43
HDAC9-228ENST00000524023 FAM163AQ96GL9 167 aaPredicted RBP12.36□□□□□ -0.43
HDAC9-228ENST00000524023 MMS19Q96T76 1030 aa12.36□□□□□ -0.43
HDAC9-228ENST00000524023 SLC39A2Q9NP94 309 aa12.36□□□□□ -0.43
HDAC9-228ENST00000524023 BLOC1S4Q9NUP1 217 aa12.36□□□□□ -0.43
HDAC9-228ENST00000524023 LRWD1Q9UFC0 647 aa12.36□□□□□ -0.43
HDAC9-228ENST00000524023 MYMKA6NI61 221 aa12.35□□□□□ -0.43
HDAC9-228ENST00000524023 hCG_1984214I3L0E3 225 aa12.35□□□□□ -0.43
HDAC9-228ENST00000524023 EIF3JO75822 258 aaKnown RBP12.35□□□□□ -0.43
HDAC9-228ENST00000524023 IPO7O95373 1038 aaKnown RBP12.35□□□□□ -0.43
HDAC9-228ENST00000524023 ATP2B4P23634 1241 aa12.35□□□□□ -0.43
HDAC9-228ENST00000524023 USP14P54578 494 aa12.35□□□□□ -0.43
HDAC9-228ENST00000524023 CASP8Q14790 479 aa12.35□□□□□ -0.43
HDAC9-228ENST00000524023 FKBP15Q5T1M5 1219 aa12.35□□□□□ -0.43
HDAC9-228ENST00000524023 ZNF713Q8N859 430 aaPredicted RBP12.35□□□□□ -0.43
HDAC9-228ENST00000524023 EXOC4Q96A65 974 aa12.35□□□□□ -0.43
HDAC9-228ENST00000524023 PNMA5Q96PV4 448 aa12.35□□□□□ -0.43
HDAC9-228ENST00000524023 PSD3Q9NYI0 1048 aa12.35□□□□□ -0.43
HDAC9-228ENST00000524023 STK17AQ9UEE5 414 aa12.35□□□□□ -0.43
HDAC9-228ENST00000524023 LY75O60449 1722 aa12.35□□□□□ -0.43
HDAC9-228ENST00000524023 FOCADQ5VW36 1801 aa12.35□□□□□ -0.43
HDAC9-228ENST00000524023 PVALEFA0A1B0GWK0 134 aa12.35□□□□□ -0.43
HDAC9-228ENST00000524023 SRGAP2O75044 1071 aa12.35□□□□□ -0.43
HDAC9-228ENST00000524023 PDHBP11177 359 aa12.35□□□□□ -0.43
HDAC9-228ENST00000524023 FXR2P51116 673 aaKnown RBP eCLIP12.35□□□□□ -0.43
HDAC9-228ENST00000524023 HNRNPH2P55795 449 aaKnown RBP12.35□□□□□ -0.43
HDAC9-228ENST00000524023 CALCRLQ16602 461 aa12.35□□□□□ -0.43
HDAC9-228ENST00000524023 UNC13DQ70J99 1090 aa12.35□□□□□ -0.43
HDAC9-228ENST00000524023 RPGRQ92834 1020 aaKnown RBP12.35□□□□□ -0.43
HDAC9-228ENST00000524023 IQCDQ96DY2 449 aa12.35□□□□□ -0.43
HDAC9-228ENST00000524023 PURBQ96QR8 312 aaKnown RBP12.35□□□□□ -0.43
HDAC9-228ENST00000524023 GGA1Q9UJY5 639 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms