RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 ST13P5Q8NFI4 369 aaPredicted RBP9.87□□□□□ -0.83
SDCBP-208ENST00000520228 RCC1LQ96I51 464 aaKnown RBP9.87□□□□□ -0.83
SDCBP-208ENST00000520228 APBA2Q99767 749 aa9.87□□□□□ -0.83
SDCBP-208ENST00000520228 GBP3Q9H0R5 595 aa9.87□□□□□ -0.83
SDCBP-208ENST00000520228 EPN3Q9H201 632 aa9.87□□□□□ -0.83
SDCBP-208ENST00000520228 SNTG2Q9NY99 539 aa9.87□□□□□ -0.83
SDCBP-208ENST00000520228 GCC2Q8IWJ2 1684 aa9.87□□□□□ -0.83
SDCBP-208ENST00000520228 MED14O60244 1454 aa9.86□□□□□ -0.83
SDCBP-208ENST00000520228 ADAMTS4O75173 837 aa9.86□□□□□ -0.83
SDCBP-208ENST00000520228 NAT2P11245 290 aa9.86□□□□□ -0.83
SDCBP-208ENST00000520228 CTSKP43235 329 aa9.86□□□□□ -0.83
SDCBP-208ENST00000520228 LRP8Q14114 963 aa9.86□□□□□ -0.83
SDCBP-208ENST00000520228 VSIG10LQ86VR7 867 aa9.86□□□□□ -0.83
SDCBP-208ENST00000520228 ARHGEF39Q8N4T4 335 aa9.86□□□□□ -0.83
SDCBP-208ENST00000520228 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.86□□□□□ -0.83
SDCBP-208ENST00000520228 BRF1Q92994 677 aa9.86□□□□□ -0.83
SDCBP-208ENST00000520228 TCTN2Q96GX1 697 aa9.86□□□□□ -0.83
SDCBP-208ENST00000520228 DEPDC7Q96QD5 511 aa9.86□□□□□ -0.83
SDCBP-208ENST00000520228 SLC5A6Q9Y289 635 aa9.86□□□□□ -0.83
SDCBP-208ENST00000520228 SLIT1O75093 1534 aa9.86□□□□□ -0.83
SDCBP-208ENST00000520228 PPM1BO75688 479 aa9.85□□□□□ -0.83
SDCBP-208ENST00000520228 CD96P40200 585 aa9.85□□□□□ -0.83
SDCBP-208ENST00000520228 CLEC16AQ2KHT3 1053 aa9.85□□□□□ -0.83
SDCBP-208ENST00000520228 SLC10A6Q3KNW5 377 aa9.85□□□□□ -0.83
SDCBP-208ENST00000520228 NOL9Q5SY16 702 aaKnown RBP9.85□□□□□ -0.83
SDCBP-208ENST00000520228 FIBCD1Q8N539 461 aa9.85□□□□□ -0.83
SDCBP-208ENST00000520228 USHBP1Q8N6Y0 703 aa9.85□□□□□ -0.83
SDCBP-208ENST00000520228 ZNF669Q96BR6 464 aaPredicted RBP9.85□□□□□ -0.83
SDCBP-208ENST00000520228 DIS3Q9Y2L1 958 aaKnown RBP9.85□□□□□ -0.83
SDCBP-208ENST00000520228 PIK3C2BO00750 1634 aa9.85□□□□□ -0.83
SDCBP-208ENST00000520228 E9PCH4 1651 aa9.84□□□□□ -0.83
SDCBP-208ENST00000520228 RIMS2Q9UQ26 1411 aa9.84□□□□□ -0.83
SDCBP-208ENST00000520228 ADGRB3O60242 1522 aa9.84□□□□□ -0.83
SDCBP-208ENST00000520228 HYAL3O43820 417 aaPredicted RBP9.84□□□□□ -0.83
SDCBP-208ENST00000520228 CD8BP10966 210 aa9.84□□□□□ -0.83
SDCBP-208ENST00000520228 ADAT2Q7Z6V5 191 aaKnown RBP9.84□□□□□ -0.83
SDCBP-208ENST00000520228 SLC26A8Q96RN1 970 aa9.84□□□□□ -0.83
SDCBP-208ENST00000520228 CAPNS1P04632 268 aa9.83□□□□□ -0.84
SDCBP-208ENST00000520228 ZNF574Q6ZN55 896 aaPredicted RBP9.83□□□□□ -0.84
SDCBP-208ENST00000520228 ADCY4Q8NFM4 1077 aa9.83□□□□□ -0.84
SDCBP-208ENST00000520228 FBXO41Q8TF61 875 aa9.83□□□□□ -0.84
SDCBP-208ENST00000520228 SRPK1Q96SB4 655 aaKnown RBP9.83□□□□□ -0.84
SDCBP-208ENST00000520228 PIF1Q9H611 641 aa9.83□□□□□ -0.84
SDCBP-208ENST00000520228 NOL6Q9H6R4 1146 aaKnown RBP9.83□□□□□ -0.84
SDCBP-208ENST00000520228 ZSWIM4Q9H7M6 989 aa9.83□□□□□ -0.84
SDCBP-208ENST00000520228 PAK6Q9NQU5 681 aaPredicted RBP9.83□□□□□ -0.84
SDCBP-208ENST00000520228 LMCD1Q9NZU5 365 aa9.83□□□□□ -0.84
SDCBP-208ENST00000520228 CGGBP1Q9UFW8 167 aaPredicted RBP9.83□□□□□ -0.84
SDCBP-208ENST00000520228 DUSP13Q9UII6 198 aa9.83□□□□□ -0.84
SDCBP-208ENST00000520228 EMC9Q9Y3B6 208 aa9.83□□□□□ -0.84
SDCBP-208ENST00000520228 NEURL4Q96JN8 1562 aa9.83□□□□□ -0.84
SDCBP-208ENST00000520228 UBR1Q8IWV7 1749 aa9.82□□□□□ -0.84
SDCBP-208ENST00000520228 CCDC85CA6NKD9 419 aa9.82□□□□□ -0.84
SDCBP-208ENST00000520228 H0Y8X5 98 aa9.82□□□□□ -0.84
SDCBP-208ENST00000520228 GSNP06396 782 aa9.82□□□□□ -0.84
SDCBP-208ENST00000520228 BMS1Q14692 1282 aaKnown RBP9.82□□□□□ -0.84
SDCBP-208ENST00000520228 NFE2L2Q16236 605 aa9.82□□□□□ -0.84
SDCBP-208ENST00000520228 LINC00116Q8NCU8 138 aa9.82□□□□□ -0.84
SDCBP-208ENST00000520228 BVESQ8NE79 360 aa9.82□□□□□ -0.84
SDCBP-208ENST00000520228 MRGPRX3Q96LB0 322 aa9.82□□□□□ -0.84
SDCBP-208ENST00000520228 DSCC1Q9BVC3 393 aa9.82□□□□□ -0.84
SDCBP-208ENST00000520228 PCMTD2Q9NV79 361 aa9.82□□□□□ -0.84
SDCBP-208ENST00000520228 ZNF281Q9Y2X9 895 aa9.82□□□□□ -0.84
SDCBP-208ENST00000520228 CFAP65Q6ZU64 1925 aaKnown RBP9.82□□□□□ -0.84
SDCBP-208ENST00000520228 ZFYVE9O95405 1425 aa9.82□□□□□ -0.84
SDCBP-208ENST00000520228 PLEKHG1Q9ULL1 1385 aa9.81□□□□□ -0.84
SDCBP-208ENST00000520228 MEIS1O00470 390 aa9.81□□□□□ -0.84
SDCBP-208ENST00000520228 BMP8BP34820 402 aa9.81□□□□□ -0.84
SDCBP-208ENST00000520228 SV2CQ496J9 727 aa9.81□□□□□ -0.84
SDCBP-208ENST00000520228 ARTNQ5T4W7 220 aa9.81□□□□□ -0.84
SDCBP-208ENST00000520228 CRTC3Q6UUV7 619 aa9.81□□□□□ -0.84
SDCBP-208ENST00000520228 SPATC1Q76KD6 591 aa9.81□□□□□ -0.84
SDCBP-208ENST00000520228 CREG2Q8IUH2 290 aa9.81□□□□□ -0.84
SDCBP-208ENST00000520228 ZMYM5Q9UJ78 669 aa9.81□□□□□ -0.84
SDCBP-208ENST00000520228 PCDHA11Q9Y5I1 949 aa9.81□□□□□ -0.84
SDCBP-208ENST00000520228 TRPM2O94759 1503 aa9.81□□□□□ -0.84
SDCBP-208ENST00000520228 ITGAVP06756 1048 aa9.8□□□□□ -0.84
SDCBP-208ENST00000520228 TEKQ02763 1124 aa9.8□□□□□ -0.84
SDCBP-208ENST00000520228 IKZF1Q13422 519 aa9.8□□□□□ -0.84
SDCBP-208ENST00000520228 RNF111Q6ZNA4 994 aa9.8□□□□□ -0.84
SDCBP-208ENST00000520228 SGSM3Q96HU1 749 aa9.8□□□□□ -0.84
SDCBP-208ENST00000520228 LGR4Q9BXB1 951 aa9.8□□□□□ -0.84
SDCBP-208ENST00000520228 SUGT1Q9Y2Z0 365 aa9.8□□□□□ -0.84
SDCBP-208ENST00000520228 SF3B6Q9Y3B4 125 aaKnown RBP9.8□□□□□ -0.84
SDCBP-208ENST00000520228 TBX22Q9Y458 520 aa9.8□□□□□ -0.84
SDCBP-208ENST00000520228 LTBP4Q8N2S1 1624 aa9.8□□□□□ -0.84
SDCBP-208ENST00000520228 CCDC144AA2RUR9 1427 aa9.8□□□□□ -0.84
SDCBP-208ENST00000520228 RPGRIP1LQ68CZ1 1315 aa9.8□□□□□ -0.84
SDCBP-208ENST00000520228 TMEM131LA2VDJ0 1609 aa9.79□□□□□ -0.84
SDCBP-208ENST00000520228 WNT11O96014 354 aa9.79□□□□□ -0.84
SDCBP-208ENST00000520228 KCNA6P17658 529 aa9.79□□□□□ -0.84
SDCBP-208ENST00000520228 GRB10Q13322 594 aa9.79□□□□□ -0.84
SDCBP-208ENST00000520228 PPP2R5DQ14738 602 aa9.79□□□□□ -0.84
SDCBP-208ENST00000520228 RGL3Q3MIN7 710 aa9.79□□□□□ -0.84
SDCBP-208ENST00000520228 ANGEL2Q5VTE6 544 aaKnown RBP9.79□□□□□ -0.84
SDCBP-208ENST00000520228 ZNF227Q86WZ6 799 aa9.79□□□□□ -0.84
SDCBP-208ENST00000520228 TRIM59Q8IWR1 403 aa9.79□□□□□ -0.84
SDCBP-208ENST00000520228 LRRN4CLQ8ND94 238 aa9.79□□□□□ -0.84
SDCBP-208ENST00000520228 FLCNQ8NFG4 579 aa9.79□□□□□ -0.84
SDCBP-208ENST00000520228 ANGEL1Q9UNK9 670 aaKnown RBP9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 116 ms