RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 SMARCA5O60264 1052 aaPredicted RBP5.21□□□□□ -1.58
NUP54-208ENST00000508604 ZBTB7AO95365 584 aa5.21□□□□□ -1.58
NUP54-208ENST00000508604 ACRP10323 421 aa5.21□□□□□ -1.58
NUP54-208ENST00000508604 AXDND1Q5T1B0 1012 aaPredicted RBP5.21□□□□□ -1.58
NUP54-208ENST00000508604 EEF1DP3Q658K8 133 aa5.21□□□□□ -1.58
NUP54-208ENST00000508604 TSPAN17Q96FV3 270 aa5.21□□□□□ -1.58
NUP54-208ENST00000508604 ZDHHC15Q96MV8 337 aa5.21□□□□□ -1.58
NUP54-208ENST00000508604 SMPD4Q9NXE4 827 aa5.21□□□□□ -1.58
NUP54-208ENST00000508604 NOBOXO60393 691 aa5.2□□□□□ -1.58
NUP54-208ENST00000508604 GLI4P10075 376 aa5.2□□□□□ -1.58
NUP54-208ENST00000508604 IFNGR1P15260 489 aa5.2□□□□□ -1.58
NUP54-208ENST00000508604 MC3RP41968 323 aa5.2□□□□□ -1.58
NUP54-208ENST00000508604 LZTR1Q8N653 840 aa5.2□□□□□ -1.58
NUP54-208ENST00000508604 USP33Q8TEY7 942 aa5.2□□□□□ -1.58
NUP54-208ENST00000508604 LNPKQ9C0E8 428 aa5.2□□□□□ -1.58
NUP54-208ENST00000508604 FAM86C1Q9NVL1 165 aa5.2□□□□□ -1.58
NUP54-208ENST00000508604 PMLP29590 882 aa5.19□□□□□ -1.58
NUP54-208ENST00000508604 RCSD1Q6JBY9 416 aa5.19□□□□□ -1.58
NUP54-208ENST00000508604 PPFIBP1Q86W92 1011 aa5.19□□□□□ -1.58
NUP54-208ENST00000508604 NETO2Q8NC67 525 aa5.19□□□□□ -1.58
NUP54-208ENST00000508604 SMARCC2Q8TAQ2 1214 aa5.19□□□□□ -1.58
NUP54-208ENST00000508604 BCL2L13Q9BXK5 485 aa5.19□□□□□ -1.58
NUP54-208ENST00000508604 ITGB3P05106 788 aa5.18□□□□□ -1.58
NUP54-208ENST00000508604 GUCY2CP25092 1073 aa5.18□□□□□ -1.58
NUP54-208ENST00000508604 SEPHS1P49903 392 aa5.18□□□□□ -1.58
NUP54-208ENST00000508604 ADAM17P78536 824 aa5.18□□□□□ -1.58
NUP54-208ENST00000508604 PPP2R5DQ14738 602 aa5.18□□□□□ -1.58
NUP54-208ENST00000508604 FAM124AQ86V42 546 aa5.18□□□□□ -1.58
NUP54-208ENST00000508604 CPA5Q8WXQ8 436 aa5.18□□□□□ -1.58
NUP54-208ENST00000508604 ZBTB8AQ96BR9 441 aa5.18□□□□□ -1.58
NUP54-208ENST00000508604 GBP3Q9H0R5 595 aa5.18□□□□□ -1.58
NUP54-208ENST00000508604 PCDH18Q9HCL0 1135 aa5.18□□□□□ -1.58
NUP54-208ENST00000508604 SRRDQ9UH36 339 aa5.18□□□□□ -1.58
NUP54-208ENST00000508604 PLA2G2DQ9UNK4 145 aa5.18□□□□□ -1.58
NUP54-208ENST00000508604 ZNF451Q9Y4E5 1061 aa5.18□□□□□ -1.58
NUP54-208ENST00000508604 CACNB2Q08289 660 aaPredicted RBP5.18□□□□□ -1.58
NUP54-208ENST00000508604 KIAA2012Q0VF49 1180 aa5.18□□□□□ -1.58
NUP54-208ENST00000508604 UNC5AQ6ZN44 842 aa5.18□□□□□ -1.58
NUP54-208ENST00000508604 TMEM87AQ8NBN3 555 aa5.18□□□□□ -1.58
NUP54-208ENST00000508604 LOXL4Q96JB6 756 aa5.18□□□□□ -1.58
NUP54-208ENST00000508604 RXFP1Q9HBX9 757 aa5.18□□□□□ -1.58
NUP54-208ENST00000508604 WHRNQ9P202 907 aa5.18□□□□□ -1.58
NUP54-208ENST00000508604 RWDD3Q9Y3V2 267 aa5.18□□□□□ -1.58
NUP54-208ENST00000508604 DUSP10Q9Y6W6 482 aa5.18□□□□□ -1.58
NUP54-208ENST00000508604 TRBV23OR9-2A0A075B6M9 112 aa5.17□□□□□ -1.58
NUP54-208ENST00000508604 ZXDAP98168 799 aa5.17□□□□□ -1.58
NUP54-208ENST00000508604 DLX2Q07687 328 aaPredicted RBP5.17□□□□□ -1.58
NUP54-208ENST00000508604 CPZQ66K79 652 aa5.17□□□□□ -1.58
NUP54-208ENST00000508604 ADAT2Q7Z6V5 191 aaKnown RBP5.17□□□□□ -1.58
NUP54-208ENST00000508604 CHST13Q8NET6 341 aa5.17□□□□□ -1.58
NUP54-208ENST00000508604 GIPC2Q8TF65 315 aa5.17□□□□□ -1.58
NUP54-208ENST00000508604 BCAS3Q9H6U6 928 aa5.17□□□□□ -1.58
NUP54-208ENST00000508604 SLC12A7Q9Y666 1083 aa5.17□□□□□ -1.58
NUP54-208ENST00000508604 CYP2C8P10632 490 aa5.16□□□□□ -1.58
NUP54-208ENST00000508604 MRPL58Q14197 206 aaKnown RBP5.16□□□□□ -1.58
NUP54-208ENST00000508604 HEATR6Q6AI08 1181 aaKnown RBP5.16□□□□□ -1.58
NUP54-208ENST00000508604 BORAQ6PGQ7 559 aa5.16□□□□□ -1.58
NUP54-208ENST00000508604 ZNF761Q86XN6 746 aaPredicted RBP5.16□□□□□ -1.58
NUP54-208ENST00000508604 TTC9BQ8N6N2 239 aa5.16□□□□□ -1.58
NUP54-208ENST00000508604 SAMD11Q96NU1 681 aa5.16□□□□□ -1.58
NUP54-208ENST00000508604 CRBNQ96SW2 442 aa5.16□□□□□ -1.58
NUP54-208ENST00000508604 ZNF214Q9UL59 606 aaPredicted RBP5.16□□□□□ -1.58
NUP54-208ENST00000508604 AURKAO14965 403 aa5.15□□□□□ -1.58
NUP54-208ENST00000508604 PPM1BO75688 479 aa5.15□□□□□ -1.58
NUP54-208ENST00000508604 PAMP19021 973 aa5.15□□□□□ -1.58
NUP54-208ENST00000508604 LGI4Q8N135 537 aa5.15□□□□□ -1.58
NUP54-208ENST00000508604 RBBP8NLQ8NC74 664 aaPredicted RBP5.15□□□□□ -1.58
NUP54-208ENST00000508604 ADCY4Q8NFM4 1077 aa5.15□□□□□ -1.58
NUP54-208ENST00000508604 ADAMTS17Q8TE56 1095 aa5.15□□□□□ -1.58
NUP54-208ENST00000508604 NOX5Q96PH1 765 aa5.15□□□□□ -1.58
NUP54-208ENST00000508604 BACE2Q9Y5Z0 518 aa5.15□□□□□ -1.58
NUP54-208ENST00000508604 STXBP3O00186 592 aa5.15□□□□□ -1.59
NUP54-208ENST00000508604 PLATP00750 562 aa5.15□□□□□ -1.59
NUP54-208ENST00000508604 TNFRSF1AP19438 455 aa5.15□□□□□ -1.59
NUP54-208ENST00000508604 AMPD2Q01433 879 aa5.15□□□□□ -1.59
NUP54-208ENST00000508604 SMAD4Q13485 552 aaKnown RBP5.15□□□□□ -1.59
NUP54-208ENST00000508604 ZYXQ15942 572 aaKnown RBP5.15□□□□□ -1.59
NUP54-208ENST00000508604 DPY19L1Q2PZI1 675 aa5.15□□□□□ -1.59
NUP54-208ENST00000508604 GNPTABQ3T906 1256 aa5.15□□□□□ -1.59
NUP54-208ENST00000508604 WWC2Q6AWC2 1192 aa5.15□□□□□ -1.59
NUP54-208ENST00000508604 DDX11Q96FC9 970 aa5.15□□□□□ -1.59
NUP54-208ENST00000508604 SPATA6Q9NWH7 488 aaPredicted RBP5.15□□□□□ -1.59
NUP54-208ENST00000508604 ZNF536O15090 1300 aa5.14□□□□□ -1.59
NUP54-208ENST00000508604 NPHP3-ACAD11A0A0J9YXS1 232 aa5.14□□□□□ -1.59
NUP54-208ENST00000508604 C2orf71A6NGG8 1288 aa5.14□□□□□ -1.59
NUP54-208ENST00000508604 NPHS1O60500 1241 aa5.14□□□□□ -1.59
NUP54-208ENST00000508604 ZNF76P36508 570 aa5.14□□□□□ -1.59
NUP54-208ENST00000508604 RGL3Q3MIN7 710 aa5.14□□□□□ -1.59
NUP54-208ENST00000508604 CPNE8Q86YQ8 564 aa5.14□□□□□ -1.59
NUP54-208ENST00000508604 HAUS7Q99871 368 aa5.14□□□□□ -1.59
NUP54-208ENST00000508604 AP5M1Q9H0R1 490 aa5.14□□□□□ -1.59
NUP54-208ENST00000508604 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP5.14□□□□□ -1.593e-6■■■■□ 20.6
NUP54-208ENST00000508604 GULP1Q9UBP9 304 aa5.14□□□□□ -1.59
NUP54-208ENST00000508604 AKAP8O43823 692 aaKnown RBP5.13□□□□□ -1.59
NUP54-208ENST00000508604 VAMP4O75379 141 aa5.13□□□□□ -1.59
NUP54-208ENST00000508604 GLB1LQ6UWU2 654 aa5.13□□□□□ -1.59
NUP54-208ENST00000508604 ZC3H18Q86VM9 953 aaKnown RBP5.13□□□□□ -1.59
NUP54-208ENST00000508604 DCP2Q8IU60 420 aaKnown RBP5.13□□□□□ -1.59
NUP54-208ENST00000508604 LINC00482Q8N8I6 264 aa5.13□□□□□ -1.59
NUP54-208ENST00000508604 C8orf49Q96NF6 230 aa5.13□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms