RNA–Protein interactions for RNA: ENST00000503492.5

PCDH1-204, Transcript of protocadherin 1, humanhuman

TSL 5 BASIC

Gene PCDH1, Length 2,373 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-204ENST00000503492 RBL2Q08999 1139 aa25.26■■□□□ 1.63
PCDH1-204ENST00000503492 KCNJ12Q14500 433 aa25.26■■□□□ 1.63
PCDH1-204ENST00000503492 HSP90AA2PQ14568 343 aaPredicted RBP25.26■■□□□ 1.63
PCDH1-204ENST00000503492 REXO1L1PQ8IX06 675 aa25.26■■□□□ 1.63
PCDH1-204ENST00000503492 PNMA5Q96PV4 448 aa25.26■■□□□ 1.63
PCDH1-204ENST00000503492 H7C1D1 291 aa25.26■■□□□ 1.63
PCDH1-204ENST00000503492 CDC37Q16543 378 aaPredicted RBP25.26■■□□□ 1.63
PCDH1-204ENST00000503492 TMEM266Q2M3C6 531 aa25.26■■□□□ 1.63
PCDH1-204ENST00000503492 POTEMA6NI47 508 aa25.25■■□□□ 1.63
PCDH1-204ENST00000503492 F5H6K3 240 aa25.25■■□□□ 1.63
PCDH1-204ENST00000503492 KLRC3Q07444 240 aa25.25■■□□□ 1.63
PCDH1-204ENST00000503492 RRP1BQ14684 758 aaKnown RBP25.25■■□□□ 1.63
PCDH1-204ENST00000503492 IRF2BP1Q8IU81 584 aa25.25■■□□□ 1.63
PCDH1-204ENST00000503492 VPS16Q9H269 839 aa25.25■■□□□ 1.63
PCDH1-204ENST00000503492 BLOC1S4Q9NUP1 217 aa25.25■■□□□ 1.63
PCDH1-204ENST00000503492 TAB2Q9NYJ8 693 aa25.25■■□□□ 1.63
PCDH1-204ENST00000503492 PCDHA1Q9Y5I3 950 aa25.25■■□□□ 1.63
PCDH1-204ENST00000503492 PSME4Q14997 1843 aa25.25■■□□□ 1.63
PCDH1-204ENST00000503492 N4BP3O15049 544 aa25.25■■□□□ 1.63
PCDH1-204ENST00000503492 PDIA5Q14554 519 aa25.25■■□□□ 1.63
PCDH1-204ENST00000503492 DDX25Q9UHL0 483 aaKnown RBP25.25■■□□□ 1.63
PCDH1-204ENST00000503492 ARFGEF1Q9Y6D6 1849 aa25.24■■□□□ 1.63
PCDH1-204ENST00000503492 USP17L15C9J2P7 530 aa25.24■■□□□ 1.63
PCDH1-204ENST00000503492 USP17L13C9JLJ4 530 aa25.24■■□□□ 1.63
PCDH1-204ENST00000503492 USP17L11C9JVI0 530 aa25.24■■□□□ 1.63
PCDH1-204ENST00000503492 USP17L18D6R9N7 530 aa25.24■■□□□ 1.63
PCDH1-204ENST00000503492 USP17L22D6RA61 530 aa25.24■■□□□ 1.63
PCDH1-204ENST00000503492 USP17L17D6RBQ6 530 aa25.24■■□□□ 1.63
PCDH1-204ENST00000503492 USP17L19D6RCP7 530 aa25.24■■□□□ 1.63
PCDH1-204ENST00000503492 USP17L20D6RJB6 530 aa25.24■■□□□ 1.63
PCDH1-204ENST00000503492 ASIC1P78348 528 aa25.24■■□□□ 1.63
PCDH1-204ENST00000503492 PDE4DQ08499 809 aa25.24■■□□□ 1.63
PCDH1-204ENST00000503492 USP17L24Q0WX57 530 aa25.24■■□□□ 1.63
PCDH1-204ENST00000503492 STIM1Q13586 685 aa25.24■■□□□ 1.63
PCDH1-204ENST00000503492 USP17L6PQ6QN14 398 aa25.24■■□□□ 1.63
PCDH1-204ENST00000503492 SYT10Q6XYQ8 523 aa25.24■■□□□ 1.63
PCDH1-204ENST00000503492 PPFIBP1Q86W92 1011 aa25.24■■□□□ 1.63
PCDH1-204ENST00000503492 HAS1Q92839 578 aa25.24■■□□□ 1.63
PCDH1-204ENST00000503492 PANX2Q96RD6 677 aa25.24■■□□□ 1.63
PCDH1-204ENST00000503492 CSRNP1Q96S65 589 aa25.24■■□□□ 1.63
PCDH1-204ENST00000503492 NUP88Q99567 741 aaPredicted RBP25.24■■□□□ 1.63
PCDH1-204ENST00000503492 COL2A1P02458 1487 aaPredicted RBP25.24■■□□□ 1.63
PCDH1-204ENST00000503492 GH2P01242 217 aa25.24■■□□□ 1.63
PCDH1-204ENST00000503492 AMPD3Q01432 767 aa25.24■■□□□ 1.63
PCDH1-204ENST00000503492 TTLL6Q8N841 843 aa25.24■■□□□ 1.63
PCDH1-204ENST00000503492 GMCL1P1Q8NEA9 526 aa25.24■■□□□ 1.63
PCDH1-204ENST00000503492 CPLX3Q8WVH0 158 aa25.24■■□□□ 1.63
PCDH1-204ENST00000503492 NUDT12Q9BQG2 462 aa25.24■■□□□ 1.63
PCDH1-204ENST00000503492 EXOC1Q9NV70 894 aa25.24■■□□□ 1.63
PCDH1-204ENST00000503492 PPP2R2CQ9Y2T4 447 aa25.24■■□□□ 1.63
PCDH1-204ENST00000503492 ITIH6Q6UXX5 1313 aa25.24■■□□□ 1.63
PCDH1-204ENST00000503492 PSMA7O14818 248 aa25.23■■□□□ 1.63
PCDH1-204ENST00000503492 NDUFB10O96000 172 aa25.23■■□□□ 1.63
PCDH1-204ENST00000503492 CREBRFQ8IUR6 639 aa25.23■■□□□ 1.63
PCDH1-204ENST00000503492 CCDC93Q567U6 631 aa25.23■■□□□ 1.63
PCDH1-204ENST00000503492 RBM26Q5T8P6 1007 aaKnown RBP25.23■■□□□ 1.63
PCDH1-204ENST00000503492 TTI2Q6NXR4 508 aa25.23■■□□□ 1.63
PCDH1-204ENST00000503492 RSBN1LQ6PCB5 846 aaPredicted RBP25.23■■□□□ 1.63
PCDH1-204ENST00000503492 ANKRD20A12PQ8NF67 263 aa25.23■■□□□ 1.63
PCDH1-204ENST00000503492 RAB34Q9BZG1 259 aa25.23■■□□□ 1.63
PCDH1-204ENST00000503492 STK17AQ9UEE5 414 aa25.23■■□□□ 1.63
PCDH1-204ENST00000503492 ZSCAN12O43309 604 aa25.22■■□□□ 1.63
PCDH1-204ENST00000503492 STK4Q13043 487 aa25.22■■□□□ 1.63
PCDH1-204ENST00000503492 TOGARAM2Q6ZUX3 1019 aa25.22■■□□□ 1.63
PCDH1-204ENST00000503492 CCDC47Q96A33 483 aaKnown RBP25.22■■□□□ 1.63
PCDH1-204ENST00000503492 GMCL1Q96IK5 515 aa25.22■■□□□ 1.63
PCDH1-204ENST00000503492 TUBB4AP04350 444 aa25.22■■□□□ 1.63
PCDH1-204ENST00000503492 GYPCP04921 128 aa25.22■■□□□ 1.63
PCDH1-204ENST00000503492 SNAP25P60880 206 aa25.22■■□□□ 1.63
PCDH1-204ENST00000503492 MCM6Q14566 821 aa25.22■■□□□ 1.63
PCDH1-204ENST00000503492 TRIM65Q6PJ69 517 aa25.22■■□□□ 1.63
PCDH1-204ENST00000503492 SV2BQ7L1I2 683 aa25.22■■□□□ 1.63
PCDH1-204ENST00000503492 SNX29Q8TEQ0 813 aa25.22■■□□□ 1.63
PCDH1-204ENST00000503492 GJA10Q969M2 543 aa25.22■■□□□ 1.63
PCDH1-204ENST00000503492 DHTKD1Q96HY7 919 aaPredicted RBP25.22■■□□□ 1.63
PCDH1-204ENST00000503492 GLT8D2Q9H1C3 349 aa25.22■■□□□ 1.63
PCDH1-204ENST00000503492 SPDYE2BA6NHP3 402 aa25.21■■□□□ 1.63
PCDH1-204ENST00000503492 TCP10L2B9ZVM9 353 aa25.21■■□□□ 1.63
PCDH1-204ENST00000503492 MFAP3LO75121 409 aa25.21■■□□□ 1.63
PCDH1-204ENST00000503492 RAD17O75943 681 aa25.21■■□□□ 1.63
PCDH1-204ENST00000503492 SPDYE6P0CI01 402 aa25.21■■□□□ 1.63
PCDH1-204ENST00000503492 FCER1AP12319 257 aa25.21■■□□□ 1.63
PCDH1-204ENST00000503492 GCFC2P16383 781 aaKnown RBP25.21■■□□□ 1.63
PCDH1-204ENST00000503492 CASP14P31944 242 aa25.21■■□□□ 1.63
PCDH1-204ENST00000503492 ETF1P62495 437 aaKnown RBP25.21■■□□□ 1.63
PCDH1-204ENST00000503492 CDK5RAP3Q96JB5 506 aa25.21■■□□□ 1.63
PCDH1-204ENST00000503492 TRIM47Q96LD4 638 aa25.21■■□□□ 1.63
PCDH1-204ENST00000503492 SRRTQ9BXP5 876 aaKnown RBP25.21■■□□□ 1.63
PCDH1-204ENST00000503492 PSMD14O00487 310 aa25.2■■□□□ 1.63
PCDH1-204ENST00000503492 RTKN2Q8IZC4 609 aa25.2■■□□□ 1.63
PCDH1-204ENST00000503492 LARP4BQ92615 738 aaKnown RBP25.2■■□□□ 1.63
PCDH1-204ENST00000503492 GMLQ99445 158 aa25.2■■□□□ 1.63
PCDH1-204ENST00000503492 DUSP9Q99956 384 aaKnown RBP25.2■■□□□ 1.63
PCDH1-204ENST00000503492 THAP9Q9H5L6 903 aa25.2■■□□□ 1.63
PCDH1-204ENST00000503492 COL4A5P29400 1685 aa25.2■■□□□ 1.62
PCDH1-204ENST00000503492 CLRN2A0PK11 232 aa25.2■■□□□ 1.62
PCDH1-204ENST00000503492 MYMKA6NI61 221 aa25.2■■□□□ 1.62
PCDH1-204ENST00000503492 FXR1P51114 621 aaKnown RBP eCLIP25.2■■□□□ 1.62
PCDH1-204ENST00000503492 GRIPAP1Q4V328 841 aa25.2■■□□□ 1.62
PCDH1-204ENST00000503492 KRT79Q5XKE5 535 aa25.2■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms