RNA–Protein interactions for RNA: ENST00000491319.2

SMPD4-220, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 593 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-220ENST00000491319 KIAA1211Q6ZU35 1233 aa18.44■□□□□ 0.54
SMPD4-220ENST00000491319 BUD13Q9BRD0 619 aaKnown RBP eCLIP18.44■□□□□ 0.542e-7■□□□□ 10
SMPD4-220ENST00000491319 IL25Q9H293 177 aa18.44■□□□□ 0.54
SMPD4-220ENST00000491319 SEMA6BQ9H3T3 888 aa18.44■□□□□ 0.54
SMPD4-220ENST00000491319 HIP1O00291 1037 aa18.43■□□□□ 0.54
SMPD4-220ENST00000491319 DLL1O00548 723 aa18.43■□□□□ 0.54
SMPD4-220ENST00000491319 CD4P01730 458 aa18.43■□□□□ 0.54
SMPD4-220ENST00000491319 USH1GQ495M9 461 aa18.43■□□□□ 0.54
SMPD4-220ENST00000491319 GPATCH4Q5T3I0 446 aaKnown RBP18.43■□□□□ 0.54
SMPD4-220ENST00000491319 RNF207Q6ZRF8 634 aa18.43■□□□□ 0.54
SMPD4-220ENST00000491319 IQCA1Q86XH1 822 aa18.43■□□□□ 0.54
SMPD4-220ENST00000491319 DGKHQ86XP1 1220 aa18.43■□□□□ 0.54
SMPD4-220ENST00000491319 SLC43A3Q8NBI5 491 aa18.43■□□□□ 0.54
SMPD4-220ENST00000491319 PNMA1Q8ND90 353 aa18.43■□□□□ 0.54
SMPD4-220ENST00000491319 CDX2Q99626 313 aaPredicted RBP18.43■□□□□ 0.54
SMPD4-220ENST00000491319 DSCC1Q9BVC3 393 aa18.43■□□□□ 0.54
SMPD4-220ENST00000491319 Q9Y3F1 56 aa18.43■□□□□ 0.54
SMPD4-220ENST00000491319 TANC1Q9C0D5 1861 aa18.43■□□□□ 0.54
SMPD4-220ENST00000491319 GRIN2DO15399 1336 aa18.43■□□□□ 0.54
SMPD4-220ENST00000491319 MYH7BA7E2Y1 1941 aa18.43■□□□□ 0.54
SMPD4-220ENST00000491319 CABYRO75952 493 aa18.42■□□□□ 0.54
SMPD4-220ENST00000491319 CSF2RAP15509 400 aa18.42■□□□□ 0.54
SMPD4-220ENST00000491319 PSMC6P62333 389 aa18.42■□□□□ 0.54
SMPD4-220ENST00000491319 RPS6P62753 249 aaKnown RBP18.42■□□□□ 0.54
SMPD4-220ENST00000491319 PPIGQ13427 754 aaKnown RBP eCLIP18.42■□□□□ 0.547e-8■■□□□ 12.6
SMPD4-220ENST00000491319 ITGA7Q13683 1181 aa18.42■□□□□ 0.54
SMPD4-220ENST00000491319 DUSP28Q4G0W2 176 aa18.42■□□□□ 0.54
SMPD4-220ENST00000491319 UBA5Q9GZZ9 404 aa18.42■□□□□ 0.54
SMPD4-220ENST00000491319 PNMA2Q9UL42 364 aa18.42■□□□□ 0.54
SMPD4-220ENST00000491319 BAZ2BQ9UIF8 2168 aaKnown RBP18.42■□□□□ 0.54
SMPD4-220ENST00000491319 LOC102724159A0A0B4J2E5 919 aa18.41■□□□□ 0.54
SMPD4-220ENST00000491319 ZEB2O60315 1214 aa18.41■□□□□ 0.54
SMPD4-220ENST00000491319 PDE4AP27815 886 aa18.41■□□□□ 0.54
SMPD4-220ENST00000491319 CYP2C18P33260 490 aa18.41■□□□□ 0.54
SMPD4-220ENST00000491319 PWP2Q15269 919 aaKnown RBP18.41■□□□□ 0.54
SMPD4-220ENST00000491319 CDC37Q16543 378 aaPredicted RBP18.41■□□□□ 0.54
SMPD4-220ENST00000491319 IMMTQ16891 758 aaKnown RBP18.41■□□□□ 0.54
SMPD4-220ENST00000491319 C16orf59Q7L2K0 433 aa18.41■□□□□ 0.54
SMPD4-220ENST00000491319 ENAHQ8N8S7 591 aaPredicted RBP18.41■□□□□ 0.54
SMPD4-220ENST00000491319 ZSCAN10Q96SZ4 725 aaPredicted RBP18.41■□□□□ 0.54
SMPD4-220ENST00000491319 WDR11Q9BZH6 1224 aa18.41■□□□□ 0.54
SMPD4-220ENST00000491319 KAT14Q9H8E8 782 aa18.41■□□□□ 0.54
SMPD4-220ENST00000491319 TNKSO95271 1327 aa18.41■□□□□ 0.54
SMPD4-220ENST00000491319 UMODL1Q5DID0 1318 aa18.41■□□□□ 0.54
SMPD4-220ENST00000491319 TRIP12Q14669 1992 aaPredicted RBP18.41■□□□□ 0.54
SMPD4-220ENST00000491319 A0A0C4DFX4 3053 aa18.4■□□□□ 0.54
SMPD4-220ENST00000491319 B4GALT4O60513 344 aa18.4■□□□□ 0.54
SMPD4-220ENST00000491319 ACRP10323 421 aa18.4■□□□□ 0.54
SMPD4-220ENST00000491319 GSPT1P15170 499 aaKnown RBP18.4■□□□□ 0.54
SMPD4-220ENST00000491319 NT5C2P49902 561 aa18.4■□□□□ 0.54
SMPD4-220ENST00000491319 PDE4DQ08499 809 aa18.4■□□□□ 0.54
SMPD4-220ENST00000491319 CCDC178Q5BJE1 867 aa18.4■□□□□ 0.54
SMPD4-220ENST00000491319 TMEM240Q5SV17 173 aa18.4■□□□□ 0.54
SMPD4-220ENST00000491319 TMEM199Q8N511 208 aa18.4■□□□□ 0.54
SMPD4-220ENST00000491319 MYLIPQ8WY64 445 aa18.4■□□□□ 0.54
SMPD4-220ENST00000491319 ZSWIM5Q9P217 1185 aa18.4■□□□□ 0.54
SMPD4-220ENST00000491319 CUL9Q8IWT3 2517 aa18.4■□□□□ 0.54
SMPD4-220ENST00000491319 RBM47A0AV96 593 aaKnown RBP18.39■□□□□ 0.53
SMPD4-220ENST00000491319 EDNRBP24530 442 aa18.39■□□□□ 0.53
SMPD4-220ENST00000491319 DNAJB2P25686 324 aa18.39■□□□□ 0.53
SMPD4-220ENST00000491319 DNERQ8NFT8 737 aa18.39■□□□□ 0.53
SMPD4-220ENST00000491319 OR6J1Q8NGC5 347 aa18.39■□□□□ 0.53
SMPD4-220ENST00000491319 ANKS1AQ92625 1134 aa18.39■□□□□ 0.53
SMPD4-220ENST00000491319 TRPV6Q9H1D0 765 aa18.39■□□□□ 0.53
SMPD4-220ENST00000491319 HIPK3Q9H422 1215 aa18.39■□□□□ 0.53
SMPD4-220ENST00000491319 SUPT16HQ9Y5B9 1047 aaKnown RBP18.39■□□□□ 0.53
SMPD4-220ENST00000491319 TMEM265A0A087WTH1 108 aa18.38■□□□□ 0.53
SMPD4-220ENST00000491319 HSFX4A0A1B0GTS1 333 aaPredicted RBP18.38■□□□□ 0.53
SMPD4-220ENST00000491319 HSFX3A0A1B0GWH4 333 aaPredicted RBP18.38■□□□□ 0.53
SMPD4-220ENST00000491319 PPP2R5BQ15173 497 aa18.38■□□□□ 0.53
SMPD4-220ENST00000491319 ASPRV1Q53RT3 343 aa18.38■□□□□ 0.53
SMPD4-220ENST00000491319 TTC22Q5TAA0 569 aa18.38■□□□□ 0.53
SMPD4-220ENST00000491319 PSRC1Q6PGN9 363 aaPredicted RBP18.38■□□□□ 0.53
SMPD4-220ENST00000491319 ZNF365Q70YC5 407 aa18.38■□□□□ 0.53
SMPD4-220ENST00000491319 ADGRF4Q8IZF3 695 aa18.38■□□□□ 0.53
SMPD4-220ENST00000491319 KRT23Q9C075 422 aa18.38■□□□□ 0.53
SMPD4-220ENST00000491319 CTNNA3Q9UI47 895 aa18.38■□□□□ 0.53
SMPD4-220ENST00000491319 PRUNE2Q8WUY3 3088 aa18.37■□□□□ 0.53
SMPD4-220ENST00000491319 MYL3P08590 195 aa18.37■□□□□ 0.53
SMPD4-220ENST00000491319 CPT1AP50416 773 aa18.37■□□□□ 0.53
SMPD4-220ENST00000491319 PURAQ00577 322 aaKnown RBP18.37■□□□□ 0.53
SMPD4-220ENST00000491319 QRICH1Q2TAL8 776 aa18.37■□□□□ 0.53
SMPD4-220ENST00000491319 RASIP1Q5U651 963 aa18.37■□□□□ 0.53
SMPD4-220ENST00000491319 PHF6Q8IWS0 365 aaKnown RBP eCLIP18.37■□□□□ 0.53
SMPD4-220ENST00000491319 MAFAQ8NHW3 353 aaPredicted RBP18.37■□□□□ 0.53
SMPD4-220ENST00000491319 SCFD2Q8WU76 684 aa18.37■□□□□ 0.53
SMPD4-220ENST00000491319 TBC1D5Q92609 795 aa18.37■□□□□ 0.53
SMPD4-220ENST00000491319 COPS5Q92905 334 aa18.37■□□□□ 0.53
SMPD4-220ENST00000491319 MPHOSPH6Q99547 160 aaKnown RBP18.37■□□□□ 0.53
SMPD4-220ENST00000491319 UBAC1Q9BSL1 405 aa18.37■□□□□ 0.53
SMPD4-220ENST00000491319 NOC4LQ9BVI4 516 aaKnown RBP18.37■□□□□ 0.53
SMPD4-220ENST00000491319 WNT8AQ9H1J5 351 aa18.37■□□□□ 0.53
SMPD4-220ENST00000491319 IL23AQ9NPF7 189 aa18.37■□□□□ 0.53
SMPD4-220ENST00000491319 POLR3EQ9NVU0 708 aa18.37■□□□□ 0.53
SMPD4-220ENST00000491319 ABCB11O95342 1321 aa18.37■□□□□ 0.53
SMPD4-220ENST00000491319 GRXCR1A8MXD5 290 aa18.36■□□□□ 0.53
SMPD4-220ENST00000491319 DHX16O60231 1041 aaKnown RBP18.36■□□□□ 0.53
SMPD4-220ENST00000491319 PARP1P09874 1014 aaKnown RBP18.36■□□□□ 0.53
SMPD4-220ENST00000491319 CCL23P55773 120 aa18.36■□□□□ 0.53
SMPD4-220ENST00000491319 SEZ6LQ9BYH1 1024 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms