RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 LOC102724159A0A0B4J2E5 919 aa15.99■□□□□ 0.15
COL6A3-211ENST00000491233 ZEB2O60315 1214 aa15.99■□□□□ 0.15
COL6A3-211ENST00000491233 CABYRO75952 493 aa15.99■□□□□ 0.15
COL6A3-211ENST00000491233 RPS6P62753 249 aaKnown RBP15.99■□□□□ 0.15
COL6A3-211ENST00000491233 PWP2Q15269 919 aaKnown RBP15.99■□□□□ 0.15
COL6A3-211ENST00000491233 IMMTQ16891 758 aaKnown RBP15.99■□□□□ 0.15
COL6A3-211ENST00000491233 USH1GQ495M9 461 aa15.99■□□□□ 0.15
COL6A3-211ENST00000491233 UBA5Q9GZZ9 404 aa15.99■□□□□ 0.15
COL6A3-211ENST00000491233 IL25Q9H293 177 aa15.99■□□□□ 0.15
COL6A3-211ENST00000491233 KAT14Q9H8E8 782 aa15.99■□□□□ 0.15
COL6A3-211ENST00000491233 Q9Y3F1 56 aa15.99■□□□□ 0.15
COL6A3-211ENST00000491233 TNKSO95271 1327 aa15.98■□□□□ 0.15
COL6A3-211ENST00000491233 CD4P01730 458 aa15.98■□□□□ 0.15
COL6A3-211ENST00000491233 PDE4AP27815 886 aa15.98■□□□□ 0.15
COL6A3-211ENST00000491233 PPIGQ13427 754 aaKnown RBP eCLIP15.98■□□□□ 0.15
COL6A3-211ENST00000491233 ITGA7Q13683 1181 aa15.98■□□□□ 0.15
COL6A3-211ENST00000491233 CDC37Q16543 378 aaPredicted RBP15.98■□□□□ 0.15
COL6A3-211ENST00000491233 DUSP28Q4G0W2 176 aa15.98■□□□□ 0.15
COL6A3-211ENST00000491233 CCDC178Q5BJE1 867 aa15.98■□□□□ 0.15
COL6A3-211ENST00000491233 ENAHQ8N8S7 591 aaPredicted RBP15.98■□□□□ 0.15
COL6A3-211ENST00000491233 SLC43A3Q8NBI5 491 aa15.98■□□□□ 0.15
COL6A3-211ENST00000491233 GBF1Q92538 1859 aa15.98■□□□□ 0.15
COL6A3-211ENST00000491233 ZSCAN10Q96SZ4 725 aaPredicted RBP15.98■□□□□ 0.15
COL6A3-211ENST00000491233 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.98■□□□□ 0.15
COL6A3-211ENST00000491233 TTYH1Q9H313 450 aaPredicted RBP15.98■□□□□ 0.15
COL6A3-211ENST00000491233 SUPT16HQ9Y5B9 1047 aaKnown RBP15.98■□□□□ 0.15
COL6A3-211ENST00000491233 KIAA1217Q5T5P2 1943 aa15.98■□□□□ 0.15
COL6A3-211ENST00000491233 GRIN2DO15399 1336 aa15.97■□□□□ 0.15
COL6A3-211ENST00000491233 GSPT1P15170 499 aaKnown RBP15.97■□□□□ 0.15
COL6A3-211ENST00000491233 CSF2RAP15509 400 aa15.97■□□□□ 0.15
COL6A3-211ENST00000491233 PSMC6P62333 389 aa15.97■□□□□ 0.15
COL6A3-211ENST00000491233 PDE4DQ08499 809 aa15.97■□□□□ 0.15
COL6A3-211ENST00000491233 TTC22Q5TAA0 569 aa15.97■□□□□ 0.15
COL6A3-211ENST00000491233 TMEM199Q8N511 208 aa15.97■□□□□ 0.15
COL6A3-211ENST00000491233 ANKS1AQ92625 1134 aa15.97■□□□□ 0.15
COL6A3-211ENST00000491233 MPHOSPH6Q99547 160 aaKnown RBP15.97■□□□□ 0.15
COL6A3-211ENST00000491233 CDX2Q99626 313 aaPredicted RBP15.97■□□□□ 0.15
COL6A3-211ENST00000491233 WDR11Q9BZH6 1224 aa15.97■□□□□ 0.15
COL6A3-211ENST00000491233 KRT23Q9C075 422 aa15.97■□□□□ 0.15
COL6A3-211ENST00000491233 SEMA6BQ9H3T3 888 aa15.97■□□□□ 0.15
COL6A3-211ENST00000491233 CTNNA3Q9UI47 895 aa15.97■□□□□ 0.15
COL6A3-211ENST00000491233 SCN10AQ9Y5Y9 1956 aa15.96■□□□□ 0.15
COL6A3-211ENST00000491233 RBM47A0AV96 593 aaKnown RBP15.96■□□□□ 0.15
COL6A3-211ENST00000491233 EDNRBP24530 442 aa15.96■□□□□ 0.15
COL6A3-211ENST00000491233 CYP2C18P33260 490 aa15.96■□□□□ 0.15
COL6A3-211ENST00000491233 ASPRV1Q53RT3 343 aa15.96■□□□□ 0.15
COL6A3-211ENST00000491233 OR6J1Q8NGC5 347 aa15.96■□□□□ 0.15
COL6A3-211ENST00000491233 UBAC1Q9BSL1 405 aa15.96■□□□□ 0.15
COL6A3-211ENST00000491233 CNNM2Q9H8M5 875 aa15.96■□□□□ 0.15
COL6A3-211ENST00000491233 ZSWIM5Q9P217 1185 aa15.96■□□□□ 0.15
COL6A3-211ENST00000491233 TANC1Q9C0D5 1861 aa15.96■□□□□ 0.15
COL6A3-211ENST00000491233 ABCB11O95342 1321 aa15.95■□□□□ 0.14
COL6A3-211ENST00000491233 UMODL1Q5DID0 1318 aa15.95■□□□□ 0.14
COL6A3-211ENST00000491233 RAD50Q92878 1312 aa15.95■□□□□ 0.14
COL6A3-211ENST00000491233 TMEM265A0A087WTH1 108 aa15.95■□□□□ 0.14
COL6A3-211ENST00000491233 DLL1O00548 723 aa15.95■□□□□ 0.14
COL6A3-211ENST00000491233 DHX16O60231 1041 aaKnown RBP15.95■□□□□ 0.14
COL6A3-211ENST00000491233 B4GALT4O60513 344 aa15.95■□□□□ 0.14
COL6A3-211ENST00000491233 ACRP10323 421 aa15.95■□□□□ 0.14
COL6A3-211ENST00000491233 PPP2R5BQ15173 497 aa15.95■□□□□ 0.14
COL6A3-211ENST00000491233 TMEM240Q5SV17 173 aa15.95■□□□□ 0.14
COL6A3-211ENST00000491233 PSRC1Q6PGN9 363 aaPredicted RBP15.95■□□□□ 0.14
COL6A3-211ENST00000491233 C16orf59Q7L2K0 433 aa15.95■□□□□ 0.14
COL6A3-211ENST00000491233 DNERQ8NFT8 737 aa15.95■□□□□ 0.14
COL6A3-211ENST00000491233 MYLIPQ8WY64 445 aa15.95■□□□□ 0.14
COL6A3-211ENST00000491233 HIPK3Q9H422 1215 aa15.95■□□□□ 0.14
COL6A3-211ENST00000491233 POLR3EQ9NVU0 708 aa15.95■□□□□ 0.14
COL6A3-211ENST00000491233 LAMA2P24043 3122 aaKnown RBP15.94■□□□□ 0.14
COL6A3-211ENST00000491233 HSFX4A0A1B0GTS1 333 aaPredicted RBP15.94■□□□□ 0.14
COL6A3-211ENST00000491233 HSFX3A0A1B0GWH4 333 aaPredicted RBP15.94■□□□□ 0.14
COL6A3-211ENST00000491233 MYL3P08590 195 aa15.94■□□□□ 0.14
COL6A3-211ENST00000491233 PARP1P09874 1014 aaKnown RBP15.94■□□□□ 0.14
COL6A3-211ENST00000491233 DNAJB2P25686 324 aa15.94■□□□□ 0.14
COL6A3-211ENST00000491233 CPT1AP50416 773 aa15.94■□□□□ 0.14
COL6A3-211ENST00000491233 QRICH1Q2TAL8 776 aa15.94■□□□□ 0.14
COL6A3-211ENST00000491233 ADGRF4Q8IZF3 695 aa15.94■□□□□ 0.14
COL6A3-211ENST00000491233 SCFD2Q8WU76 684 aa15.94■□□□□ 0.14
COL6A3-211ENST00000491233 NOC4LQ9BVI4 516 aaKnown RBP15.94■□□□□ 0.14
COL6A3-211ENST00000491233 SEZ6LQ9BYH1 1024 aa15.94■□□□□ 0.14
COL6A3-211ENST00000491233 TRPV6Q9H1D0 765 aa15.94■□□□□ 0.14
COL6A3-211ENST00000491233 SCN5AQ14524 2016 aa15.94■□□□□ 0.14
COL6A3-211ENST00000491233 B4DLN1 442 aa15.93■□□□□ 0.14
COL6A3-211ENST00000491233 MRPL12P52815 198 aaKnown RBP15.93■□□□□ 0.14
COL6A3-211ENST00000491233 IRX6P78412 446 aaPredicted RBP15.93■□□□□ 0.14
COL6A3-211ENST00000491233 PURAQ00577 322 aaKnown RBP15.93■□□□□ 0.14
COL6A3-211ENST00000491233 IFIT1BQ5T764 474 aaKnown RBP15.93■□□□□ 0.14
COL6A3-211ENST00000491233 RASIP1Q5U651 963 aa15.93■□□□□ 0.14
COL6A3-211ENST00000491233 ZNF365Q70YC5 407 aa15.93■□□□□ 0.14
COL6A3-211ENST00000491233 RGS22Q8NE09 1264 aa15.93■□□□□ 0.14
COL6A3-211ENST00000491233 TBC1D5Q92609 795 aa15.93■□□□□ 0.14
COL6A3-211ENST00000491233 COPS5Q92905 334 aa15.93■□□□□ 0.14
COL6A3-211ENST00000491233 IL23AQ9NPF7 189 aa15.93■□□□□ 0.14
COL6A3-211ENST00000491233 NKRFO15226 690 aaKnown RBP eCLIP15.92■□□□□ 0.14
COL6A3-211ENST00000491233 CCL23P55773 120 aa15.92■□□□□ 0.14
COL6A3-211ENST00000491233 SEC23AQ15436 765 aa15.92■□□□□ 0.14
COL6A3-211ENST00000491233 CYB5R4Q7L1T6 521 aa15.92■□□□□ 0.14
COL6A3-211ENST00000491233 FBXO11Q86XK2 927 aa15.92■□□□□ 0.14
COL6A3-211ENST00000491233 PHF6Q8IWS0 365 aaKnown RBP eCLIP15.92■□□□□ 0.14
COL6A3-211ENST00000491233 MAFAQ8NHW3 353 aaPredicted RBP15.92■□□□□ 0.14
COL6A3-211ENST00000491233 SYTL5Q8TDW5 730 aaPredicted RBP15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms