RNA–Protein interactions for RNA: ENST00000488848.1

USP11-209, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 2

Gene USP11, Length 904 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-209ENST00000488848 CEP131Q9UPN4 1083 aa12.22□□□□□ -0.45
USP11-209ENST00000488848 LCTP09848 1927 aa12.21□□□□□ -0.45
USP11-209ENST00000488848 LOC102724159A0A0B4J2E5 919 aa12.21□□□□□ -0.45
USP11-209ENST00000488848 FAM205CA6NFA0 338 aa12.21□□□□□ -0.45
USP11-209ENST00000488848 TMEM88BA6NKF7 163 aa12.21□□□□□ -0.45
USP11-209ENST00000488848 FAM155AB1AL88 458 aaPredicted RBP12.21□□□□□ -0.45
USP11-209ENST00000488848 CNMDO75829 334 aa12.21□□□□□ -0.45
USP11-209ENST00000488848 MBD3O95983 291 aa12.21□□□□□ -0.45
USP11-209ENST00000488848 OSBPP22059 807 aa12.21□□□□□ -0.45
USP11-209ENST00000488848 GCLCP48506 637 aaPredicted RBP12.21□□□□□ -0.45
USP11-209ENST00000488848 IRX3P78415 501 aaPredicted RBP12.21□□□□□ -0.45
USP11-209ENST00000488848 ATP2C1P98194 919 aaPredicted RBP12.21□□□□□ -0.45
USP11-209ENST00000488848 PWP2Q15269 919 aaKnown RBP12.21□□□□□ -0.45
USP11-209ENST00000488848 KLHL40Q2TBA0 621 aa12.21□□□□□ -0.45
USP11-209ENST00000488848 SKOR2Q2VWA4 1001 aaPredicted RBP12.21□□□□□ -0.45
USP11-209ENST00000488848 TTC38Q5R3I4 469 aa12.21□□□□□ -0.45
USP11-209ENST00000488848 PIK3AP1Q6ZUJ8 805 aa12.21□□□□□ -0.45
USP11-209ENST00000488848 NEK8Q86SG6 692 aa12.21□□□□□ -0.45
USP11-209ENST00000488848 C4orf32Q8N8J7 132 aa12.21□□□□□ -0.45
USP11-209ENST00000488848 ZNF579Q8NAF0 562 aaKnown RBP12.21□□□□□ -0.45
USP11-209ENST00000488848 ZNF784Q8NCA9 323 aaPredicted RBP12.21□□□□□ -0.45
USP11-209ENST00000488848 SPATA32Q96LK8 384 aa12.21□□□□□ -0.45
USP11-209ENST00000488848 AGBL1Q96MI9 1066 aa12.21□□□□□ -0.45
USP11-209ENST00000488848 P2RX7Q99572 595 aaKnown RBP12.21□□□□□ -0.45
USP11-209ENST00000488848 FBXO40Q9UH90 709 aa12.21□□□□□ -0.45
USP11-209ENST00000488848 ISY1Q9ULR0 285 aaKnown RBP12.21□□□□□ -0.45
USP11-209ENST00000488848 CCL15-CCL14A0A0B4J2E2 113 aa12.2□□□□□ -0.46
USP11-209ENST00000488848 RASSF10A6NK89 507 aa12.2□□□□□ -0.46
USP11-209ENST00000488848 BTBD19C9JJ37 291 aa12.2□□□□□ -0.46
USP11-209ENST00000488848 GCOM1H8Y6P7 765 aaPredicted RBP12.2□□□□□ -0.46
USP11-209ENST00000488848 SPTLC2O15270 562 aa12.2□□□□□ -0.46
USP11-209ENST00000488848 SLC25A27O95847 323 aa12.2□□□□□ -0.46
USP11-209ENST00000488848 POLR2MP0CAP2 368 aa12.2□□□□□ -0.46
USP11-209ENST00000488848 PTPREP23469 700 aa12.2□□□□□ -0.46
USP11-209ENST00000488848 STAT3P40763 770 aa12.2□□□□□ -0.46
USP11-209ENST00000488848 C1QTNF8P60827 252 aa12.2□□□□□ -0.46
USP11-209ENST00000488848 SF3A1Q15459 793 aaKnown RBP12.2□□□□□ -0.46
USP11-209ENST00000488848 CCL15Q16663 113 aa12.2□□□□□ -0.46
USP11-209ENST00000488848 NOM1Q5C9Z4 860 aaKnown RBP12.2□□□□□ -0.46
USP11-209ENST00000488848 AXDND1Q5T1B0 1012 aaPredicted RBP12.2□□□□□ -0.46
USP11-209ENST00000488848 ADALQ6DHV7 355 aa12.2□□□□□ -0.46
USP11-209ENST00000488848 XRRA1Q6P2D8 792 aa12.2□□□□□ -0.46
USP11-209ENST00000488848 GADL1Q6ZQY3 521 aa12.2□□□□□ -0.46
USP11-209ENST00000488848 REM2Q8IYK8 340 aaPredicted RBP12.2□□□□□ -0.46
USP11-209ENST00000488848 FERMT2Q96AC1 680 aa12.2□□□□□ -0.46
USP11-209ENST00000488848 CHAMP1Q96JM3 812 aa12.2□□□□□ -0.46
USP11-209ENST00000488848 ANO3Q9BYT9 981 aa12.2□□□□□ -0.46
USP11-209ENST00000488848 SPATC1LQ9H0A9 340 aa12.2□□□□□ -0.46
USP11-209ENST00000488848 CLIC4Q9Y696 253 aa12.2□□□□□ -0.46
USP11-209ENST00000488848 PFASO15067 1338 aa12.19□□□□□ -0.46
USP11-209ENST00000488848 FIBPO43427 364 aa12.19□□□□□ -0.46
USP11-209ENST00000488848 USH1GQ495M9 461 aa12.19□□□□□ -0.46
USP11-209ENST00000488848 SNRNP48Q6IEG0 339 aaKnown RBP12.19□□□□□ -0.46
USP11-209ENST00000488848 CCDC174Q6PII3 467 aa12.19□□□□□ -0.46
USP11-209ENST00000488848 USP17L6PQ6QN14 398 aa12.19□□□□□ -0.46
USP11-209ENST00000488848 RASGRP4Q8TDF6 673 aa12.19□□□□□ -0.46
USP11-209ENST00000488848 TBCKQ8TEA7 893 aa12.19□□□□□ -0.46
USP11-209ENST00000488848 PARK7Q99497 189 aaKnown RBP12.19□□□□□ -0.46
USP11-209ENST00000488848 PTPN18Q99952 460 aa12.19□□□□□ -0.46
USP11-209ENST00000488848 FTOQ9C0B1 505 aaKnown RBP eCLIP12.19□□□□□ -0.46
USP11-209ENST00000488848 ACAD9Q9H845 621 aa12.19□□□□□ -0.46
USP11-209ENST00000488848 RAVER2Q9HCJ3 691 aaKnown RBP12.19□□□□□ -0.46
USP11-209ENST00000488848 CREBZFQ9NS37 354 aa12.19□□□□□ -0.46
USP11-209ENST00000488848 RNF146Q9NTX7 359 aa12.19□□□□□ -0.46
USP11-209ENST00000488848 BTBD7Q9P203 1132 aa12.19□□□□□ -0.46
USP11-209ENST00000488848 RBPJLQ9UBG7 517 aa12.19□□□□□ -0.46
USP11-209ENST00000488848 PCDHB6Q9Y5E3 794 aa12.19□□□□□ -0.46
USP11-209ENST00000488848 SRPRBQ9Y5M8 271 aaKnown RBP12.19□□□□□ -0.46
USP11-209ENST00000488848 LRRC37A2A6NM11 1700 aa12.18□□□□□ -0.46
USP11-209ENST00000488848 SPDYE3A6NKU9 549 aa12.18□□□□□ -0.46
USP11-209ENST00000488848 NFIBO00712 420 aa12.18□□□□□ -0.46
USP11-209ENST00000488848 WNT7AO00755 349 aa12.18□□□□□ -0.46
USP11-209ENST00000488848 TBX3O15119 743 aa12.18□□□□□ -0.46
USP11-209ENST00000488848 TM4SF4P48230 202 aa12.18□□□□□ -0.46
USP11-209ENST00000488848 ZNF157P51786 506 aaPredicted RBP12.18□□□□□ -0.46
USP11-209ENST00000488848 SNAP25P60880 206 aa12.18□□□□□ -0.46
USP11-209ENST00000488848 STK38Q15208 465 aa12.18□□□□□ -0.46
USP11-209ENST00000488848 UBE2SQ16763 222 aa12.18□□□□□ -0.46
USP11-209ENST00000488848 FAM110CQ1W6H9 321 aa12.18□□□□□ -0.46
USP11-209ENST00000488848 INF2Q27J81 1249 aa12.18□□□□□ -0.46
USP11-209ENST00000488848 Q4G0T1 1027 aa12.18□□□□□ -0.46
USP11-209ENST00000488848 NIPA1Q7RTP0 329 aa12.18□□□□□ -0.46
USP11-209ENST00000488848 SYTL5Q8TDW5 730 aaPredicted RBP12.18□□□□□ -0.46
USP11-209ENST00000488848 LENG9Q96B70 501 aa12.18□□□□□ -0.46
USP11-209ENST00000488848 PGBD1Q96JS3 809 aa12.18□□□□□ -0.46
USP11-209ENST00000488848 TRERF1Q96PN7 1200 aa12.18□□□□□ -0.46
USP11-209ENST00000488848 MTMR9Q96QG7 549 aa12.18□□□□□ -0.46
USP11-209ENST00000488848 CFHR5Q9BXR6 569 aa12.18□□□□□ -0.46
USP11-209ENST00000488848 MROH8Q9H579 483 aa12.18□□□□□ -0.46
USP11-209ENST00000488848 EHMT1Q9H9B1 1298 aa12.18□□□□□ -0.46
USP11-209ENST00000488848 TFIP11Q9UBB9 837 aaKnown RBP12.18□□□□□ -0.46
USP11-209ENST00000488848 BIN2Q9UBW5 565 aaPredicted RBP12.18□□□□□ -0.46
USP11-209ENST00000488848 FBXO2Q9UK22 296 aaPredicted RBP12.18□□□□□ -0.46
USP11-209ENST00000488848 RIPK3Q9Y572 518 aa12.18□□□□□ -0.46
USP11-209ENST00000488848 PDHXO00330 501 aa12.17□□□□□ -0.46
USP11-209ENST00000488848 CUTAO60888 179 aa12.17□□□□□ -0.46
USP11-209ENST00000488848 PRPF40AO75400 957 aaKnown RBP12.17□□□□□ -0.46
USP11-209ENST00000488848 BCRP11274 1271 aa12.17□□□□□ -0.46
USP11-209ENST00000488848 CMA1P23946 247 aa12.17□□□□□ -0.46
USP11-209ENST00000488848 RPS6P62753 249 aaKnown RBP12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms