RNA–Protein interactions for RNA: ENST00000488228.1

UBE4B-210, Transcript of ubiquitination factor E4B, humanhuman

TSL 3

Gene UBE4B, Length 560 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4B-210ENST00000488228 TNS4Q8IZW8 715 aa12.76□□□□□ -0.37
UBE4B-210ENST00000488228 FAM133AQ8N9E0 248 aa12.76□□□□□ -0.37
UBE4B-210ENST00000488228 TBC1D5Q92609 795 aa12.76□□□□□ -0.37
UBE4B-210ENST00000488228 MAML3Q96JK9 1138 aa12.76□□□□□ -0.37
UBE4B-210ENST00000488228 COL20A1Q9P218 1284 aa12.76□□□□□ -0.37
UBE4B-210ENST00000488228 LIMCH1Q9UPQ0 1083 aa12.76□□□□□ -0.37
UBE4B-210ENST00000488228 SOWAHBA6NEL2 793 aa12.75□□□□□ -0.37
UBE4B-210ENST00000488228 STXBP3O00186 592 aa12.75□□□□□ -0.37
UBE4B-210ENST00000488228 CTDNEP1O95476 244 aa12.75□□□□□ -0.37
UBE4B-210ENST00000488228 CFBP00751 764 aa12.75□□□□□ -0.37
UBE4B-210ENST00000488228 SCG2P13521 617 aa12.75□□□□□ -0.37
UBE4B-210ENST00000488228 HOXA13P31271 388 aaPredicted RBP12.75□□□□□ -0.37
UBE4B-210ENST00000488228 CYP2C19P33261 490 aa12.75□□□□□ -0.37
UBE4B-210ENST00000488228 NAPAP54920 295 aa12.75□□□□□ -0.37
UBE4B-210ENST00000488228 PKN1Q16512 942 aa12.75□□□□□ -0.37
UBE4B-210ENST00000488228 PFKFB3Q16875 520 aaPredicted RBP12.75□□□□□ -0.37
UBE4B-210ENST00000488228 CCDC83Q8IWF9 413 aa12.75□□□□□ -0.37
UBE4B-210ENST00000488228 RNF26Q9BY78 433 aaPredicted RBP12.75□□□□□ -0.37
UBE4B-210ENST00000488228 BIN2Q9UBW5 565 aaPredicted RBP12.75□□□□□ -0.37
UBE4B-210ENST00000488228 BRCA2P51587 3418 aa12.75□□□□□ -0.37
UBE4B-210ENST00000488228 STK36Q9NRP7 1315 aa12.74□□□□□ -0.37
UBE4B-210ENST00000488228 PRPF3O43395 683 aaKnown RBP12.74□□□□□ -0.37
UBE4B-210ENST00000488228 JAK2O60674 1132 aa12.74□□□□□ -0.37
UBE4B-210ENST00000488228 PRKAR2AP13861 404 aaKnown RBP12.74□□□□□ -0.37
UBE4B-210ENST00000488228 AKAP17AQ02040 695 aaKnown RBP12.74□□□□□ -0.37
UBE4B-210ENST00000488228 OLFML2BQ68BL8 750 aa12.74□□□□□ -0.37
UBE4B-210ENST00000488228 CPLX2Q6PUV4 134 aaKnown RBP12.74□□□□□ -0.37
UBE4B-210ENST00000488228 MCF2L2Q86YR7 1114 aa12.74□□□□□ -0.37
UBE4B-210ENST00000488228 TRIM22Q8IYM9 498 aa12.74□□□□□ -0.37
UBE4B-210ENST00000488228 SYTL5Q8TDW5 730 aaPredicted RBP12.74□□□□□ -0.37
UBE4B-210ENST00000488228 PXYLP1Q8TE99 480 aa12.74□□□□□ -0.37
UBE4B-210ENST00000488228 ARMC5Q96C12 935 aa12.74□□□□□ -0.37
UBE4B-210ENST00000488228 SHISA4Q96DD7 197 aa12.74□□□□□ -0.37
UBE4B-210ENST00000488228 ABHD8Q96I13 439 aa12.74□□□□□ -0.37
UBE4B-210ENST00000488228 ZNF333Q96JL9 665 aa12.74□□□□□ -0.37
UBE4B-210ENST00000488228 AIFM3Q96NN9 605 aa12.74□□□□□ -0.37
UBE4B-210ENST00000488228 SLC5A4Q9NY91 659 aa12.74□□□□□ -0.37
UBE4B-210ENST00000488228 CDKL5O76039 1030 aa12.73□□□□□ -0.37
UBE4B-210ENST00000488228 HSD17B4P51659 736 aa12.73□□□□□ -0.37
UBE4B-210ENST00000488228 GHRHRQ02643 423 aa12.73□□□□□ -0.37
UBE4B-210ENST00000488228 SSRP1Q08945 709 aaKnown RBP12.73□□□□□ -0.37
UBE4B-210ENST00000488228 TRAF1Q13077 416 aa12.73□□□□□ -0.37
UBE4B-210ENST00000488228 MTFR1Q15390 333 aa12.73□□□□□ -0.37
UBE4B-210ENST00000488228 UBE2SQ16763 222 aa12.73□□□□□ -0.37
UBE4B-210ENST00000488228 PPP1R18Q6NYC8 613 aa12.73□□□□□ -0.37
UBE4B-210ENST00000488228 NSUN7Q8NE18 718 aaKnown RBP12.73□□□□□ -0.37
UBE4B-210ENST00000488228 TINF2Q9BSI4 451 aa12.73□□□□□ -0.37
UBE4B-210ENST00000488228 SH2B1Q9NRF2 756 aaPredicted RBP12.73□□□□□ -0.37
UBE4B-210ENST00000488228 BARHL2Q9NY43 387 aa12.73□□□□□ -0.37
UBE4B-210ENST00000488228 VPS54Q9P1Q0 977 aa12.73□□□□□ -0.37
UBE4B-210ENST00000488228 RBM27Q9P2N5 1060 aaKnown RBP12.73□□□□□ -0.37
UBE4B-210ENST00000488228 GCOM1H8Y6P7 765 aaPredicted RBP12.72□□□□□ -0.37
UBE4B-210ENST00000488228 hCG_1984214I3L0E3 225 aa12.72□□□□□ -0.37
UBE4B-210ENST00000488228 DEXIO95424 95 aa12.72□□□□□ -0.37
UBE4B-210ENST00000488228 IGHA2P01877 340 aa12.72□□□□□ -0.37
UBE4B-210ENST00000488228 POLR2MP0CAP2 368 aa12.72□□□□□ -0.37
UBE4B-210ENST00000488228 ALDH5A1P51649 535 aaPredicted RBP12.72□□□□□ -0.37
UBE4B-210ENST00000488228 FOSBP53539 338 aa12.72□□□□□ -0.37
UBE4B-210ENST00000488228 CACNB2Q08289 660 aaPredicted RBP12.72□□□□□ -0.37
UBE4B-210ENST00000488228 MFSD14CQ5VZR4 134 aa12.72□□□□□ -0.37
UBE4B-210ENST00000488228 USP17L6PQ6QN14 398 aa12.72□□□□□ -0.37
UBE4B-210ENST00000488228 ARMCX2Q7L311 632 aa12.72□□□□□ -0.37
UBE4B-210ENST00000488228 FCHSD1Q86WN1 690 aa12.72□□□□□ -0.37
UBE4B-210ENST00000488228 TRMT44Q8IYL2 757 aaKnown RBP12.72□□□□□ -0.37
UBE4B-210ENST00000488228 ZNF713Q8N859 430 aaPredicted RBP12.72□□□□□ -0.37
UBE4B-210ENST00000488228 RGS22Q8NE09 1264 aa12.72□□□□□ -0.37
UBE4B-210ENST00000488228 TRPV1Q8NER1 839 aa12.72□□□□□ -0.37
UBE4B-210ENST00000488228 TMX3Q96JJ7 454 aa12.72□□□□□ -0.37
UBE4B-210ENST00000488228 ZSCAN31Q96LW9 406 aaPredicted RBP12.72□□□□□ -0.37
UBE4B-210ENST00000488228 TAAR1Q96RJ0 339 aa12.72□□□□□ -0.37
UBE4B-210ENST00000488228 UNC93B1Q9H1C4 597 aa12.72□□□□□ -0.37
UBE4B-210ENST00000488228 DIS3Q9Y2L1 958 aaKnown RBP12.72□□□□□ -0.37
UBE4B-210ENST00000488228 SYNGAP1Q96PV0 1343 aa12.71□□□□□ -0.37
UBE4B-210ENST00000488228 ADAMTS3O15072 1205 aa12.71□□□□□ -0.37
UBE4B-210ENST00000488228 CYBAP13498 195 aa12.71□□□□□ -0.37
UBE4B-210ENST00000488228 CCL5P13501 91 aa12.71□□□□□ -0.37
UBE4B-210ENST00000488228 FDPSP14324 419 aaKnown RBP12.71□□□□□ -0.37
UBE4B-210ENST00000488228 EIF2AK2P19525 551 aaKnown RBP12.71□□□□□ -0.37
UBE4B-210ENST00000488228 CCND3P30281 292 aaPredicted RBP12.71□□□□□ -0.37
UBE4B-210ENST00000488228 ADCY7P51828 1080 aa12.71□□□□□ -0.37
UBE4B-210ENST00000488228 UBXN2AP68543 259 aa12.71□□□□□ -0.37
UBE4B-210ENST00000488228 PRAMEF19Q5SWL8 479 aa12.71□□□□□ -0.37
UBE4B-210ENST00000488228 MAP3K21Q5TCX8 1036 aa12.71□□□□□ -0.37
UBE4B-210ENST00000488228 ZNF467Q7Z7K2 595 aaPredicted RBP12.71□□□□□ -0.37
UBE4B-210ENST00000488228 IL31RAQ8NI17 732 aa12.71□□□□□ -0.37
UBE4B-210ENST00000488228 SMARCC2Q8TAQ2 1214 aa12.71□□□□□ -0.37
UBE4B-210ENST00000488228 CUL5Q93034 780 aa12.71□□□□□ -0.37
UBE4B-210ENST00000488228 PSTPIP2Q9H939 334 aa12.71□□□□□ -0.37
UBE4B-210ENST00000488228 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.71□□□□□ -0.37
UBE4B-210ENST00000488228 ORC3Q9UBD5 711 aaPredicted RBP12.71□□□□□ -0.37
UBE4B-210ENST00000488228 ADD3Q9UEY8 706 aaKnown RBP12.71□□□□□ -0.37
UBE4B-210ENST00000488228 MEIS2O14770 477 aa12.7□□□□□ -0.38
UBE4B-210ENST00000488228 SNAI1O95863 264 aaPredicted RBP12.7□□□□□ -0.38
UBE4B-210ENST00000488228 MAMDC4Q6UXC1 1216 aa12.7□□□□□ -0.38
UBE4B-210ENST00000488228 EEPD1Q7L9B9 569 aa12.7□□□□□ -0.38
UBE4B-210ENST00000488228 FBXO16Q8IX29 292 aaPredicted RBP12.7□□□□□ -0.38
UBE4B-210ENST00000488228 CCDC148Q8NFR7 591 aa12.7□□□□□ -0.38
UBE4B-210ENST00000488228 LENG1Q96BZ8 264 aaPredicted RBP12.7□□□□□ -0.38
UBE4B-210ENST00000488228 PGBD1Q96JS3 809 aa12.7□□□□□ -0.38
UBE4B-210ENST00000488228 RMDN3Q96TC7 470 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms